RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 EXOSC9Q06265 439 aaKnown RBP16.42■□□□□ 0.22
VPS52-220ENST00000493674 BARGINQ6ZT62 677 aa16.42■□□□□ 0.22
VPS52-220ENST00000493674 GJD4Q96KN9 370 aaPredicted RBP16.42■□□□□ 0.22
VPS52-220ENST00000493674 CDCA7Q9BWT1 371 aaPredicted RBP16.42■□□□□ 0.22
VPS52-220ENST00000493674 LGR6Q9HBX8 967 aa16.42■□□□□ 0.22
VPS52-220ENST00000493674 HSP90AB1P08238 724 aaKnown RBP16.41■□□□□ 0.22
VPS52-220ENST00000493674 MPRIPQ6WCQ1 1025 aa16.41■□□□□ 0.22
VPS52-220ENST00000493674 SOCS7O14512 581 aa16.4■□□□□ 0.22
VPS52-220ENST00000493674 TAF7Q15545 349 aaPredicted RBP16.4■□□□□ 0.22
VPS52-220ENST00000493674 CICQ96RK0 1608 aaPredicted RBP16.4■□□□□ 0.22
VPS52-220ENST00000493674 DCAF5Q96JK2 942 aa16.39■□□□□ 0.21
VPS52-220ENST00000493674 USP35Q9P2H5 1018 aa16.39■□□□□ 0.21
VPS52-220ENST00000493674 EP400Q96L91 3159 aa16.38■□□□□ 0.21
VPS52-220ENST00000493674 RARSP54136 660 aaKnown RBP16.38■□□□□ 0.21
VPS52-220ENST00000493674 RRP1P56182 461 aaKnown RBP16.38■□□□□ 0.21
VPS52-220ENST00000493674 ZNF428Q96B54 188 aa16.38■□□□□ 0.21
VPS52-220ENST00000493674 LAS1LQ9Y4W2 734 aaKnown RBP16.38■□□□□ 0.21
VPS52-220ENST00000493674 NHSQ6T4R5 1651 aa16.37■□□□□ 0.21
VPS52-220ENST00000493674 TSPYL4Q9UJ04 414 aa16.37■□□□□ 0.21
VPS52-220ENST00000493674 HEG1Q9ULI3 1381 aa16.37■□□□□ 0.21
VPS52-220ENST00000493674 ZNF831Q5JPB2 1677 aa16.37■□□□□ 0.21
VPS52-220ENST00000493674 KCPQ6ZWJ8 1503 aa16.36■□□□□ 0.21
VPS52-220ENST00000493674 TEFQ10587 303 aa16.36■□□□□ 0.21
VPS52-220ENST00000493674 TSPYL6Q8N831 410 aa16.36■□□□□ 0.21
VPS52-220ENST00000493674 C8orf58Q8NAV2 365 aa16.36■□□□□ 0.21
VPS52-220ENST00000493674 SLC52A2Q9HAB3 445 aa16.36■□□□□ 0.21
VPS52-220ENST00000493674 SOS1Q07889 1333 aaPredicted RBP16.36■□□□□ 0.21
VPS52-220ENST00000493674 VAMP4O75379 141 aa16.35■□□□□ 0.21
VPS52-220ENST00000493674 BRPF1P55201 1214 aaPredicted RBP16.35■□□□□ 0.21
VPS52-220ENST00000493674 ALDH1L2Q3SY69 923 aa16.35■□□□□ 0.21
VPS52-220ENST00000493674 MIS18AQ9NYP9 233 aa16.35■□□□□ 0.21
VPS52-220ENST00000493674 TJP1Q07157 1748 aa16.34■□□□□ 0.21
VPS52-220ENST00000493674 BTAF1O14981 1849 aa16.34■□□□□ 0.21
VPS52-220ENST00000493674 ERVV-2B6SEH9 535 aa16.34■□□□□ 0.21
VPS52-220ENST00000493674 ONECUT3O60422 494 aaPredicted RBP16.34■□□□□ 0.21
VPS52-220ENST00000493674 TWISTNBQ3B726 338 aaPredicted RBP16.34■□□□□ 0.21
VPS52-220ENST00000493674 CCDC9Q9Y3X0 531 aaKnown RBP16.34■□□□□ 0.21
VPS52-220ENST00000493674 GTF3C3Q9Y5Q9 886 aa16.34■□□□□ 0.21
VPS52-220ENST00000493674 BCAR3O75815 825 aa16.33■□□□□ 0.2
VPS52-220ENST00000493674 EXOC5O00471 708 aa16.32■□□□□ 0.2
VPS52-220ENST00000493674 EIF4A1P60842 406 aaKnown RBP16.32■□□□□ 0.2
VPS52-220ENST00000493674 KRT24Q2M2I5 525 aa16.32■□□□□ 0.2
VPS52-220ENST00000493674 SSH1Q8WYL5 1049 aa16.32■□□□□ 0.2
VPS52-220ENST00000493674 BTBD11A6QL63 1104 aa16.31■□□□□ 0.2
VPS52-220ENST00000493674 HOXB7P09629 217 aa16.31■□□□□ 0.2
VPS52-220ENST00000493674 DDB1Q16531 1140 aa16.31■□□□□ 0.2
VPS52-220ENST00000493674 DDX54Q8TDD1 881 aaKnown RBP16.31■□□□□ 0.2
VPS52-220ENST00000493674 LY75O60449 1722 aa16.31■□□□□ 0.2
VPS52-220ENST00000493674 COL5A3P25940 1745 aaPredicted RBP16.31■□□□□ 0.2
VPS52-220ENST00000493674 BCL9O00512 1426 aa16.3■□□□□ 0.2
VPS52-220ENST00000493674 KCNQ3O43525 872 aa16.3■□□□□ 0.2
VPS52-220ENST00000493674 NFATC2IPQ8NCF5 419 aa16.3■□□□□ 0.2
VPS52-220ENST00000493674 RREB1Q92766 1687 aa16.3■□□□□ 0.2
VPS52-220ENST00000493674 NEFLP07196 543 aa16.29■□□□□ 0.2
VPS52-220ENST00000493674 FAM98CQ17RN3 349 aaKnown RBP16.29■□□□□ 0.2
VPS52-220ENST00000493674 CABP4P57796 275 aa16.28■□□□□ 0.2
VPS52-220ENST00000493674 ERICH6BQ5W0A0 696 aa16.28■□□□□ 0.2
VPS52-220ENST00000493674 ZNF790Q6PG37 636 aa16.28■□□□□ 0.2
VPS52-220ENST00000493674 MRPL50Q8N5N7 158 aaKnown RBP16.28■□□□□ 0.2
VPS52-220ENST00000493674 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.28■□□□□ 0.2
VPS52-220ENST00000493674 MARCH10Q8NA82 808 aaPredicted RBP16.28■□□□□ 0.2
VPS52-220ENST00000493674 TAF1LQ8IZX4 1826 aa16.28■□□□□ 0.2
VPS52-220ENST00000493674 KIF16BQ96L93 1317 aa16.27■□□□□ 0.2
VPS52-220ENST00000493674 ELL2O00472 640 aaPredicted RBP16.27■□□□□ 0.2
VPS52-220ENST00000493674 FKBP8Q14318 412 aa16.27■□□□□ 0.2
VPS52-220ENST00000493674 SEPT12Q8IYM1 358 aa16.27■□□□□ 0.2
VPS52-220ENST00000493674 SMC4Q9NTJ3 1288 aa16.27■□□□□ 0.2
VPS52-220ENST00000493674 NUP188Q5SRE5 1749 aa16.27■□□□□ 0.19
VPS52-220ENST00000493674 TNS1Q9HBL0 1735 aaKnown RBP16.26■□□□□ 0.19
VPS52-220ENST00000493674 PLIN1O60240 522 aa16.26■□□□□ 0.19
VPS52-220ENST00000493674 BCL2L13Q9BXK5 485 aa16.26■□□□□ 0.19
VPS52-220ENST00000493674 ARFGEF2Q9Y6D5 1785 aa16.26■□□□□ 0.19
VPS52-220ENST00000493674 PDE3AQ14432 1141 aa16.25■□□□□ 0.19
VPS52-220ENST00000493674 GIGYF1O75420 1035 aaPredicted RBP16.24■□□□□ 0.19
VPS52-220ENST00000493674 IRX6P78412 446 aaPredicted RBP16.24■□□□□ 0.19
VPS52-220ENST00000493674 SLC39A6Q13433 755 aa16.24■□□□□ 0.19
VPS52-220ENST00000493674 C20orf194Q5TEA3 1177 aa16.24■□□□□ 0.19
VPS52-220ENST00000493674 MYH14Q7Z406 1995 aaKnown RBP16.24■□□□□ 0.19
VPS52-220ENST00000493674 A0A0G2JS52 829 aa16.23■□□□□ 0.19
VPS52-220ENST00000493674 MYT1Q01538 1121 aa16.23■□□□□ 0.19
VPS52-220ENST00000493674 KRT27Q7Z3Y8 459 aa16.23■□□□□ 0.19
VPS52-220ENST00000493674 ARHGAP45Q92619 1136 aa16.23■□□□□ 0.19
VPS52-220ENST00000493674 TMOD3Q9NYL9 352 aa16.23■□□□□ 0.19
VPS52-220ENST00000493674 AFDNP55196 1824 aaKnown RBP16.23■□□□□ 0.19
VPS52-220ENST00000493674 ZKSCAN2Q63HK3 967 aa16.22■□□□□ 0.19
VPS52-220ENST00000493674 PIGBQ92521 554 aa16.22■□□□□ 0.19
VPS52-220ENST00000493674 ZNF496Q96IT1 587 aaPredicted RBP16.22■□□□□ 0.19
VPS52-220ENST00000493674 RGPD3A6NKT7 1758 aaPredicted RBP16.22■□□□□ 0.19
VPS52-220ENST00000493674 RGPD4Q7Z3J3 1758 aa16.22■□□□□ 0.19
VPS52-220ENST00000493674 ANKRD36CQ5JPF3 1778 aa16.21■□□□□ 0.19
VPS52-220ENST00000493674 TRIM27P14373 513 aa16.21■□□□□ 0.19
VPS52-220ENST00000493674 CCDC30Q5VVM6 783 aa16.21■□□□□ 0.19
VPS52-220ENST00000493674 ATF7IPQ6VMQ6 1270 aa16.21■□□□□ 0.19
VPS52-220ENST00000493674 FMNL2Q96PY5 1086 aa16.21■□□□□ 0.19
VPS52-220ENST00000493674 PXDNLA1KZ92 1463 aa16.21■□□□□ 0.19
VPS52-220ENST00000493674 TTC5Q8N0Z6 440 aa16.2■□□□□ 0.18
VPS52-220ENST00000493674 CHMP4AQ9BY43 222 aa16.2■□□□□ 0.18
VPS52-220ENST00000493674 NOB1Q9ULX3 412 aaKnown RBP16.2■□□□□ 0.18
VPS52-220ENST00000493674 TNNQ9UQP3 1299 aa16.2■□□□□ 0.18
VPS52-220ENST00000493674 ABCC4O15439 1325 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms