RNA–Protein interactions for RNA: ENST00000492996.6

HERC4-211, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 3,385 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-211ENST00000492996 PCDH11XQ9BZA7 1347 aa9.15□□□□□ -0.94
HERC4-211ENST00000492996 PCDH11YQ9BZA8 1340 aa9.15□□□□□ -0.94
HERC4-211ENST00000492996 SRPK2P78362 688 aaKnown RBP9.15□□□□□ -0.94
HERC4-211ENST00000492996 C20orf194Q5TEA3 1177 aa9.15□□□□□ -0.94
HERC4-211ENST00000492996 HDGFL2Q7Z4V5 671 aaPredicted RBP9.15□□□□□ -0.94
HERC4-211ENST00000492996 PDZRN3Q9UPQ7 1066 aa9.15□□□□□ -0.94
HERC4-211ENST00000492996 HOXC9P31274 260 aa9.15□□□□□ -0.95
HERC4-211ENST00000492996 CRBNQ96SW2 442 aa9.15□□□□□ -0.95
HERC4-211ENST00000492996 SPINK5Q9NQ38 1064 aaPredicted RBP9.14□□□□□ -0.95
HERC4-211ENST00000492996 RRP7AQ9Y3A4 280 aaKnown RBP9.14□□□□□ -0.95
HERC4-211ENST00000492996 DUSP27Q5VZP5 1158 aa9.14□□□□□ -0.95
HERC4-211ENST00000492996 PROM2Q8N271 834 aa9.13□□□□□ -0.95
HERC4-211ENST00000492996 MTFR1LQ9H019 292 aa9.13□□□□□ -0.95
HERC4-211ENST00000492996 MYH14Q7Z406 1995 aaKnown RBP9.13□□□□□ -0.95
HERC4-211ENST00000492996 IL2RBP14784 551 aa9.13□□□□□ -0.95
HERC4-211ENST00000492996 SKAP1Q86WV1 359 aa9.13□□□□□ -0.95
HERC4-211ENST00000492996 MTHFSP49914 203 aa9.13□□□□□ -0.95
HERC4-211ENST00000492996 IL27Q8NEV9 243 aa9.12□□□□□ -0.95
HERC4-211ENST00000492996 ERVV-2B6SEH9 535 aa9.12□□□□□ -0.95
HERC4-211ENST00000492996 LARP1Q6PKG0 1096 aaKnown RBP9.12□□□□□ -0.95
HERC4-211ENST00000492996 NGDNQ8NEJ9 315 aaKnown RBP9.12□□□□□ -0.95
HERC4-211ENST00000492996 CABP1Q9NZU7 370 aa9.12□□□□□ -0.95
HERC4-211ENST00000492996 CD2APQ9Y5K6 639 aa9.12□□□□□ -0.95
HERC4-211ENST00000492996 VSIG10Q8N0Z9 540 aa9.12□□□□□ -0.95
HERC4-211ENST00000492996 PRDM11Q9NQV5 511 aa9.12□□□□□ -0.95
HERC4-211ENST00000492996 NBPF14Q5TI25 921 aa9.11□□□□□ -0.95
HERC4-211ENST00000492996 BABAM1Q9NWV8 329 aa9.11□□□□□ -0.95
HERC4-211ENST00000492996 ECM29Q5VYK3 1845 aa9.11□□□□□ -0.95
HERC4-211ENST00000492996 COL4A1P02462 1669 aa9.11□□□□□ -0.95
HERC4-211ENST00000492996 SLFN5Q08AF3 891 aa9.11□□□□□ -0.95
HERC4-211ENST00000492996 SMARCC1Q92922 1105 aaPredicted RBP9.11□□□□□ -0.95
HERC4-211ENST00000492996 GGNBP2Q9H3C7 697 aa9.11□□□□□ -0.95
HERC4-211ENST00000492996 AXIN2Q9Y2T1 843 aa9.11□□□□□ -0.95
HERC4-211ENST00000492996 ZNF521Q96K83 1311 aa9.11□□□□□ -0.95
HERC4-211ENST00000492996 RTL5Q5HYW3 569 aaPredicted RBP9.1□□□□□ -0.95
HERC4-211ENST00000492996 ATP10DQ9P241 1426 aa9.1□□□□□ -0.95
HERC4-211ENST00000492996 FANCIQ9NVI1 1328 aa9.1□□□□□ -0.95
HERC4-211ENST00000492996 RBM33Q96EV2 1170 aaKnown RBP9.1□□□□□ -0.95
HERC4-211ENST00000492996 LTBP3Q9NS15 1303 aa9.1□□□□□ -0.95
HERC4-211ENST00000492996 SSFA2P28290 1259 aa9.09□□□□□ -0.95
HERC4-211ENST00000492996 FYB1O15117 783 aa9.09□□□□□ -0.95
HERC4-211ENST00000492996 BCAR3O75815 825 aa9.09□□□□□ -0.95
HERC4-211ENST00000492996 SLC15A2Q16348 729 aa9.09□□□□□ -0.95
HERC4-211ENST00000492996 ABTB2Q8N961 1025 aa9.09□□□□□ -0.95
HERC4-211ENST00000492996 HTATSF1O43719 755 aaKnown RBP9.09□□□□□ -0.95
HERC4-211ENST00000492996 U2AF1L5P0DN76 240 aaPredicted RBP9.08□□□□□ -0.96
HERC4-211ENST00000492996 U2AF1Q01081 240 aaKnown RBP eCLIP9.08□□□□□ -0.965e-7■■■■□ 20.1
HERC4-211ENST00000492996 NPM2Q86SE8 214 aaKnown RBP9.08□□□□□ -0.96
HERC4-211ENST00000492996 CFAP53Q96M91 514 aa9.08□□□□□ -0.96
HERC4-211ENST00000492996 U2SURPO15042 1029 aaKnown RBP9.07□□□□□ -0.96
HERC4-211ENST00000492996 SF3B2Q13435 895 aaKnown RBP9.07□□□□□ -0.96
HERC4-211ENST00000492996 WWC1Q8IX03 1113 aa9.07□□□□□ -0.96
HERC4-211ENST00000492996 PNPLA7Q6ZV29 1317 aa9.07□□□□□ -0.96
HERC4-211ENST00000492996 DDB1Q16531 1140 aa9.07□□□□□ -0.96
HERC4-211ENST00000492996 E9PSI1 815 aa9.07□□□□□ -0.96
HERC4-211ENST00000492996 HSP90AB1P08238 724 aaKnown RBP9.07□□□□□ -0.96
HERC4-211ENST00000492996 NUP98P52948 1817 aa9.06□□□□□ -0.96
HERC4-211ENST00000492996 FBLN1P23142 703 aa9.06□□□□□ -0.96
HERC4-211ENST00000492996 NUTM2BA6NNL0 878 aaPredicted RBP9.06□□□□□ -0.96
HERC4-211ENST00000492996 NUTM2EB1AL46 878 aaPredicted RBP9.06□□□□□ -0.96
HERC4-211ENST00000492996 NUTM2AQ8IVF1 878 aaPredicted RBP9.06□□□□□ -0.96
HERC4-211ENST00000492996 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.06□□□□□ -0.96
HERC4-211ENST00000492996 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.06□□□□□ -0.96
HERC4-211ENST00000492996 RUNDC1Q96C34 613 aa9.06□□□□□ -0.96
HERC4-211ENST00000492996 PPM1GO15355 546 aaPredicted RBP9.06□□□□□ -0.96
HERC4-211ENST00000492996 ADAMTS2O95450 1211 aa9.06□□□□□ -0.96
HERC4-211ENST00000492996 AMOTQ4VCS5 1084 aa9.06□□□□□ -0.96
HERC4-211ENST00000492996 SOS1Q07889 1333 aaPredicted RBP9.05□□□□□ -0.96
HERC4-211ENST00000492996 CANXP27824 592 aaKnown RBP9.05□□□□□ -0.96
HERC4-211ENST00000492996 FRAT1Q92837 279 aaPredicted RBP9.05□□□□□ -0.96
HERC4-211ENST00000492996 ANKRD24Q8TF21 1146 aa9.05□□□□□ -0.96
HERC4-211ENST00000492996 BCL2L13Q9BXK5 485 aa9.05□□□□□ -0.96
HERC4-211ENST00000492996 FAM98CQ17RN3 349 aaKnown RBP9.04□□□□□ -0.96
HERC4-211ENST00000492996 TRMT2AQ8IZ69 625 aaKnown RBP9.04□□□□□ -0.96
HERC4-211ENST00000492996 SPON1Q9HCB6 807 aa9.04□□□□□ -0.96
HERC4-211ENST00000492996 KLRG2A4D1S0 409 aaPredicted RBP9.04□□□□□ -0.96
HERC4-211ENST00000492996 PMFBP1Q8TBY8 1022 aa9.04□□□□□ -0.96
HERC4-211ENST00000492996 ANP32AP39687 249 aaKnown RBP9.03□□□□□ -0.96
HERC4-211ENST00000492996 EZH2Q15910 746 aaKnown RBP9.03□□□□□ -0.96
HERC4-211ENST00000492996 TCERG1O14776 1098 aaKnown RBP9.03□□□□□ -0.96
HERC4-211ENST00000492996 PDE4AP27815 886 aa9.03□□□□□ -0.96
HERC4-211ENST00000492996 GLIPR1L2Q4G1C9 344 aa9.03□□□□□ -0.96
HERC4-211ENST00000492996 TRPM7Q96QT4 1865 aa9.03□□□□□ -0.96
HERC4-211ENST00000492996 EXOC5O00471 708 aa9.03□□□□□ -0.96
HERC4-211ENST00000492996 PANK1Q8TE04 598 aa9.03□□□□□ -0.96
HERC4-211ENST00000492996 PAK3O75914 559 aaPredicted RBP9.02□□□□□ -0.97
HERC4-211ENST00000492996 TGFB2P61812 414 aa9.02□□□□□ -0.97
HERC4-211ENST00000492996 TXNRD1Q16881 649 aa9.02□□□□□ -0.97
HERC4-211ENST00000492996 RGS3P49796 1198 aa9.02□□□□□ -0.97
HERC4-211ENST00000492996 COG6Q9Y2V7 657 aa9.02□□□□□ -0.97
HERC4-211ENST00000492996 GRIPAP1Q4V328 841 aa9.01□□□□□ -0.97
HERC4-211ENST00000492996 VPS33BQ9H267 617 aa9.01□□□□□ -0.97
HERC4-211ENST00000492996 NUTM2FA1L443 756 aa9.01□□□□□ -0.97
HERC4-211ENST00000492996 NLRP6P59044 892 aa9.01□□□□□ -0.97
HERC4-211ENST00000492996 CLUAP1Q96AJ1 413 aa9.01□□□□□ -0.97
HERC4-211ENST00000492996 COG3Q96JB2 828 aa9.01□□□□□ -0.97
HERC4-211ENST00000492996 ERBB4Q15303 1308 aa9.01□□□□□ -0.97
HERC4-211ENST00000492996 TNNQ9UQP3 1299 aa9.01□□□□□ -0.97
HERC4-211ENST00000492996 NGEFQ8N5V2 710 aa9□□□□□ -0.97
HERC4-211ENST00000492996 TSR2Q969E8 191 aaKnown RBP9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms