RNA–Protein interactions for RNA: ENST00000492851.1

COL6A1-205, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 435 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-205ENST00000492851 LINC00116Q8NCU8 138 aa16.89■□□□□ 0.29
COL6A1-205ENST00000492851 KDRP35968 1356 aa16.89■□□□□ 0.29
COL6A1-205ENST00000492851 C4BP0C0L5 1744 aa16.88■□□□□ 0.29
COL6A1-205ENST00000492851 GNPATO15228 680 aa16.88■□□□□ 0.29
COL6A1-205ENST00000492851 PHF14O94880 888 aa16.88■□□□□ 0.29
COL6A1-205ENST00000492851 TRAPPC3LQ5T215 181 aa16.88■□□□□ 0.29
COL6A1-205ENST00000492851 RC3H1Q5TC82 1133 aaKnown RBP16.88■□□□□ 0.29
COL6A1-205ENST00000492851 PELP1Q8IZL8 1130 aaKnown RBP16.88■□□□□ 0.29
COL6A1-205ENST00000492851 RTCBQ9Y3I0 505 aaKnown RBP16.88■□□□□ 0.29
COL6A1-205ENST00000492851 ITPK1Q13572 414 aa16.87■□□□□ 0.29
COL6A1-205ENST00000492851 AEBP1Q8IUX7 1158 aa16.87■□□□□ 0.29
COL6A1-205ENST00000492851 NLGN2Q8NFZ4 835 aa16.87■□□□□ 0.29
COL6A1-205ENST00000492851 RBM42Q9BTD8 480 aaKnown RBP16.87■□□□□ 0.29
COL6A1-205ENST00000492851 TUBGCP6Q96RT7 1819 aa16.86■□□□□ 0.29
COL6A1-205ENST00000492851 ADRA2BP18089 450 aa16.86■□□□□ 0.29
COL6A1-205ENST00000492851 AKAP4Q5JQC9 854 aa16.86■□□□□ 0.29
COL6A1-205ENST00000492851 ZNF784Q8NCA9 323 aaPredicted RBP16.86■□□□□ 0.29
COL6A1-205ENST00000492851 TAF1LQ8IZX4 1826 aa16.85■□□□□ 0.29
COL6A1-205ENST00000492851 DIAPH1O60610 1272 aaKnown RBP16.85■□□□□ 0.29
COL6A1-205ENST00000492851 NLGN1Q8N2Q7 840 aa16.85■□□□□ 0.29
COL6A1-205ENST00000492851 NFATC2IPQ8NCF5 419 aa16.85■□□□□ 0.29
COL6A1-205ENST00000492851 NPC1L1Q9UHC9 1359 aa16.85■□□□□ 0.29
COL6A1-205ENST00000492851 CC2D1BQ5T0F9 858 aaKnown RBP16.83■□□□□ 0.28
COL6A1-205ENST00000492851 CNTNAP4Q9C0A0 1308 aa16.83■□□□□ 0.28
COL6A1-205ENST00000492851 KDM6AO15550 1401 aaPredicted RBP16.82■□□□□ 0.28
COL6A1-205ENST00000492851 RPS6KA4O75676 772 aa16.82■□□□□ 0.28
COL6A1-205ENST00000492851 AMIGO3Q86WK7 504 aa16.82■□□□□ 0.28
COL6A1-205ENST00000492851 RFC4P35249 363 aa16.81■□□□□ 0.28
COL6A1-205ENST00000492851 SLC4A9Q96Q91 983 aa16.81■□□□□ 0.28
COL6A1-205ENST00000492851 ZNF831Q5JPB2 1677 aa16.81■□□□□ 0.28
COL6A1-205ENST00000492851 PTCD1O75127 700 aaKnown RBP16.8■□□□□ 0.28
COL6A1-205ENST00000492851 HMOX1P09601 288 aa16.79■□□□□ 0.28
COL6A1-205ENST00000492851 YBX3P16989 372 aaKnown RBP eCLIP16.79■□□□□ 0.28
COL6A1-205ENST00000492851 SMIM5Q71RC9 77 aa16.79■□□□□ 0.28
COL6A1-205ENST00000492851 ARHGEF1Q92888 912 aaKnown RBP16.79■□□□□ 0.28
COL6A1-205ENST00000492851 SLC52A2Q9HAB3 445 aa16.79■□□□□ 0.28
COL6A1-205ENST00000492851 UTRNP46939 3433 aa16.79■□□□□ 0.28
COL6A1-205ENST00000492851 UBR3Q6ZT12 1888 aa16.78■□□□□ 0.28
COL6A1-205ENST00000492851 MMP10P09238 476 aa16.78■□□□□ 0.28
COL6A1-205ENST00000492851 CHD4Q14839 1912 aa16.77■□□□□ 0.28
COL6A1-205ENST00000492851 TGFB2P61812 414 aa16.77■□□□□ 0.28
COL6A1-205ENST00000492851 CFAP53Q96M91 514 aa16.77■□□□□ 0.28
COL6A1-205ENST00000492851 RNMTO43148 476 aaKnown RBP16.76■□□□□ 0.27
COL6A1-205ENST00000492851 MTHFSDQ2M296 383 aaKnown RBP16.76■□□□□ 0.27
COL6A1-205ENST00000492851 LGR6Q9HBX8 967 aa16.76■□□□□ 0.27
COL6A1-205ENST00000492851 PARP3Q9Y6F1 533 aa16.76■□□□□ 0.27
COL6A1-205ENST00000492851 U2SURPO15042 1029 aaKnown RBP16.75■□□□□ 0.27
COL6A1-205ENST00000492851 CRKLP46109 303 aaKnown RBP16.75■□□□□ 0.27
COL6A1-205ENST00000492851 CCDC87Q9NVE4 849 aa16.75■□□□□ 0.27
COL6A1-205ENST00000492851 GYS1P13807 737 aa16.74■□□□□ 0.27
COL6A1-205ENST00000492851 VSIG10Q8N0Z9 540 aa16.74■□□□□ 0.27
COL6A1-205ENST00000492851 GAS2L2Q8NHY3 880 aa16.74■□□□□ 0.27
COL6A1-205ENST00000492851 NUDCQ9Y266 331 aa16.73■□□□□ 0.27
COL6A1-205ENST00000492851 GNAT3A8MTJ3 354 aa16.71■□□□□ 0.27
COL6A1-205ENST00000492851 ZPR1O75312 459 aa16.71■□□□□ 0.27
COL6A1-205ENST00000492851 GIGYF1O75420 1035 aaPredicted RBP16.71■□□□□ 0.27
COL6A1-205ENST00000492851 C1QTNF8P60827 252 aa16.71■□□□□ 0.27
COL6A1-205ENST00000492851 CNGB1Q14028 1251 aaPredicted RBP16.71■□□□□ 0.27
COL6A1-205ENST00000492851 INTS5Q6P9B9 1019 aaKnown RBP16.71■□□□□ 0.27
COL6A1-205ENST00000492851 TTC5Q8N0Z6 440 aa16.71■□□□□ 0.27
COL6A1-205ENST00000492851 TEFQ10587 303 aa16.7■□□□□ 0.26
COL6A1-205ENST00000492851 DNAJC10Q8IXB1 793 aa16.7■□□□□ 0.26
COL6A1-205ENST00000492851 TEX13AQ9BXU3 409 aaPredicted RBP16.7■□□□□ 0.26
COL6A1-205ENST00000492851 USP42Q9H9J4 1324 aaKnown RBP16.7■□□□□ 0.26
COL6A1-205ENST00000492851 STARD3NLO95772 234 aa16.69■□□□□ 0.26
COL6A1-205ENST00000492851 CYP19A1P11511 503 aaPredicted RBP16.69■□□□□ 0.26
COL6A1-205ENST00000492851 COL5A3P25940 1745 aaPredicted RBP16.69■□□□□ 0.26
COL6A1-205ENST00000492851 SCN11AQ9UI33 1791 aa16.69■□□□□ 0.26
COL6A1-205ENST00000492851 MRC1P22897 1456 aa16.68■□□□□ 0.26
COL6A1-205ENST00000492851 SLC39A6Q13433 755 aa16.68■□□□□ 0.26
COL6A1-205ENST00000492851 SOS1Q07889 1333 aaPredicted RBP16.67■□□□□ 0.26
COL6A1-205ENST00000492851 COL3A1P02461 1466 aaPredicted RBP16.67■□□□□ 0.26
COL6A1-205ENST00000492851 CICQ96RK0 1608 aaPredicted RBP16.67■□□□□ 0.26
COL6A1-205ENST00000492851 A0A0G2JLW4 131 aa16.66■□□□□ 0.26
COL6A1-205ENST00000492851 FKBP8Q14318 412 aa16.66■□□□□ 0.26
COL6A1-205ENST00000492851 C10orf71Q711Q0 1435 aa16.66■□□□□ 0.26
COL6A1-205ENST00000492851 IL17REQ8NFR9 667 aa16.66■□□□□ 0.26
COL6A1-205ENST00000492851 NARFQ9UHQ1 456 aa16.66■□□□□ 0.26
COL6A1-205ENST00000492851 GOLGB1Q14789 3259 aaKnown RBP16.66■□□□□ 0.26
COL6A1-205ENST00000492851 A0A087WZG4 1122 aa16.65■□□□□ 0.26
COL6A1-205ENST00000492851 FCHSD2O94868 740 aa16.65■□□□□ 0.26
COL6A1-205ENST00000492851 PPP2R1AP30153 589 aa16.65■□□□□ 0.26
COL6A1-205ENST00000492851 TM4SF1P30408 202 aa16.65■□□□□ 0.26
COL6A1-205ENST00000492851 ZNF790Q6PG37 636 aa16.65■□□□□ 0.26
COL6A1-205ENST00000492851 GPBP1L1Q9HC44 474 aaPredicted RBP16.65■□□□□ 0.26
COL6A1-205ENST00000492851 SRP68Q9UHB9 627 aaKnown RBP16.65■□□□□ 0.26
COL6A1-205ENST00000492851 BCS1LQ9Y276 419 aa16.65■□□□□ 0.26
COL6A1-205ENST00000492851 U2AF1L5P0DN76 240 aaPredicted RBP16.64■□□□□ 0.25
COL6A1-205ENST00000492851 DPEP1P16444 411 aa16.64■□□□□ 0.25
COL6A1-205ENST00000492851 U2AF1Q01081 240 aaKnown RBP eCLIP16.64■□□□□ 0.25
COL6A1-205ENST00000492851 USPL1Q5W0Q7 1092 aa16.64■□□□□ 0.25
COL6A1-205ENST00000492851 NPM2Q86SE8 214 aaKnown RBP16.64■□□□□ 0.25
COL6A1-205ENST00000492851 RSPH6AQ9H0K4 717 aa16.64■□□□□ 0.25
COL6A1-205ENST00000492851 PIM2Q9P1W9 311 aa16.64■□□□□ 0.25
COL6A1-205ENST00000492851 PXDNLA1KZ92 1463 aa16.64■□□□□ 0.25
COL6A1-205ENST00000492851 ATP10DQ9P241 1426 aa16.63■□□□□ 0.25
COL6A1-205ENST00000492851 ADAMTS7Q9UKP4 1686 aa16.63■□□□□ 0.25
COL6A1-205ENST00000492851 C4AP0C0L4 1744 aa16.63■□□□□ 0.25
COL6A1-205ENST00000492851 PRKAR2BP31323 418 aa16.63■□□□□ 0.25
COL6A1-205ENST00000492851 RTF1Q92541 710 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms