RNA–Protein interactions for RNA: ENST00000491421.5

LSM2-213, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM2, Length 820 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-213ENST00000491421 CABP4P57796 275 aa11.19□□□□□ -0.62
LSM2-213ENST00000491421 ITGB4P16144 1822 aa11.19□□□□□ -0.62
LSM2-213ENST00000491421 C4BP0C0L5 1744 aa11.18□□□□□ -0.62
LSM2-213ENST00000491421 NPC1L1Q9UHC9 1359 aa11.18□□□□□ -0.62
LSM2-213ENST00000491421 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.18□□□□□ -0.62
LSM2-213ENST00000491421 DIAPH1O60610 1272 aaKnown RBP11.18□□□□□ -0.62
LSM2-213ENST00000491421 ITPK1Q13572 414 aa11.18□□□□□ -0.62
LSM2-213ENST00000491421 AMIGO3Q86WK7 504 aa11.18□□□□□ -0.62
LSM2-213ENST00000491421 RBM42Q9BTD8 480 aaKnown RBP11.18□□□□□ -0.62
LSM2-213ENST00000491421 UTRNP46939 3433 aa11.17□□□□□ -0.62
LSM2-213ENST00000491421 GNPATO15228 680 aa11.17□□□□□ -0.62
LSM2-213ENST00000491421 HMOX1P09601 288 aa11.17□□□□□ -0.62
LSM2-213ENST00000491421 SSFA2P28290 1259 aa11.17□□□□□ -0.62
LSM2-213ENST00000491421 SMIM5Q71RC9 77 aa11.17□□□□□ -0.62
LSM2-213ENST00000491421 GPR162Q16538 588 aa11.16□□□□□ -0.62
LSM2-213ENST00000491421 AKAP4Q5JQC9 854 aa11.16□□□□□ -0.62
LSM2-213ENST00000491421 NLGN2Q8NFZ4 835 aa11.16□□□□□ -0.62
LSM2-213ENST00000491421 COL24A1Q17RW2 1714 aa11.15□□□□□ -0.62
LSM2-213ENST00000491421 TAF1LQ8IZX4 1826 aa11.15□□□□□ -0.62
LSM2-213ENST00000491421 PELP1Q8IZL8 1130 aaKnown RBP11.15□□□□□ -0.62
LSM2-213ENST00000491421 NFATC2IPQ8NCF5 419 aa11.15□□□□□ -0.62
LSM2-213ENST00000491421 SLC4A9Q96Q91 983 aa11.15□□□□□ -0.62
LSM2-213ENST00000491421 U2SURPO15042 1029 aaKnown RBP11.14□□□□□ -0.63
LSM2-213ENST00000491421 PTCD1O75127 700 aaKnown RBP11.14□□□□□ -0.63
LSM2-213ENST00000491421 RTCBQ9Y3I0 505 aaKnown RBP11.14□□□□□ -0.63
LSM2-213ENST00000491421 COL3A1P02461 1466 aaPredicted RBP11.13□□□□□ -0.63
LSM2-213ENST00000491421 GOLGB1Q14789 3259 aaKnown RBP11.13□□□□□ -0.63
LSM2-213ENST00000491421 MTHFSDQ2M296 383 aaKnown RBP11.13□□□□□ -0.63
LSM2-213ENST00000491421 SLC52A2Q9HAB3 445 aa11.13□□□□□ -0.63
LSM2-213ENST00000491421 CNTNAP4Q9C0A0 1308 aa11.12□□□□□ -0.63
LSM2-213ENST00000491421 RNMTO43148 476 aaKnown RBP11.12□□□□□ -0.63
LSM2-213ENST00000491421 TRAPPC3LQ5T215 181 aa11.12□□□□□ -0.63
LSM2-213ENST00000491421 RC3H1Q5TC82 1133 aaKnown RBP11.12□□□□□ -0.63
LSM2-213ENST00000491421 CFAP53Q96M91 514 aa11.12□□□□□ -0.63
LSM2-213ENST00000491421 LGR6Q9HBX8 967 aa11.12□□□□□ -0.63
LSM2-213ENST00000491421 CD2APQ9Y5K6 639 aa11.12□□□□□ -0.63
LSM2-213ENST00000491421 UBR3Q6ZT12 1888 aa11.11□□□□□ -0.63
LSM2-213ENST00000491421 RPS6KA4O75676 772 aa11.11□□□□□ -0.63
LSM2-213ENST00000491421 ADRA2BP18089 450 aa11.11□□□□□ -0.63
LSM2-213ENST00000491421 RFC4P35249 363 aa11.1□□□□□ -0.63
LSM2-213ENST00000491421 CRKLP46109 303 aaKnown RBP11.1□□□□□ -0.63
LSM2-213ENST00000491421 ARHGEF1Q92888 912 aaKnown RBP11.1□□□□□ -0.63
LSM2-213ENST00000491421 MRC1P22897 1456 aa11.1□□□□□ -0.63
LSM2-213ENST00000491421 ZNF831Q5JPB2 1677 aa11.1□□□□□ -0.63
LSM2-213ENST00000491421 GRIN3BO60391 1043 aa11.09□□□□□ -0.63
LSM2-213ENST00000491421 MMP10P09238 476 aa11.09□□□□□ -0.63
LSM2-213ENST00000491421 YBX3P16989 372 aaKnown RBP eCLIP11.09□□□□□ -0.632e-9■■□□□ 14.2
LSM2-213ENST00000491421 NLGN1Q8N2Q7 840 aa11.09□□□□□ -0.63
LSM2-213ENST00000491421 ZNF784Q8NCA9 323 aaPredicted RBP11.09□□□□□ -0.63
LSM2-213ENST00000491421 GAS2L2Q8NHY3 880 aa11.09□□□□□ -0.63
LSM2-213ENST00000491421 PPP2R1AP30153 589 aa11.08□□□□□ -0.64
LSM2-213ENST00000491421 SLC39A6Q13433 755 aa11.08□□□□□ -0.64
LSM2-213ENST00000491421 NUDCQ9Y266 331 aa11.08□□□□□ -0.64
LSM2-213ENST00000491421 GNAT3A8MTJ3 354 aa11.07□□□□□ -0.64
LSM2-213ENST00000491421 GYS1P13807 737 aa11.07□□□□□ -0.64
LSM2-213ENST00000491421 PRKAR2BP31323 418 aa11.07□□□□□ -0.64
LSM2-213ENST00000491421 DNAJC10Q8IXB1 793 aa11.07□□□□□ -0.64
LSM2-213ENST00000491421 CCDC87Q9NVE4 849 aa11.07□□□□□ -0.64
LSM2-213ENST00000491421 SCN11AQ9UI33 1791 aa11.07□□□□□ -0.64
LSM2-213ENST00000491421 COL5A3P25940 1745 aaPredicted RBP11.06□□□□□ -0.64
LSM2-213ENST00000491421 U2AF1L5P0DN76 240 aaPredicted RBP11.06□□□□□ -0.64
LSM2-213ENST00000491421 U2AF1Q01081 240 aaKnown RBP eCLIP11.06□□□□□ -0.64
LSM2-213ENST00000491421 TEFQ10587 303 aa11.06□□□□□ -0.64
LSM2-213ENST00000491421 INTS5Q6P9B9 1019 aaKnown RBP11.06□□□□□ -0.64
LSM2-213ENST00000491421 TTC5Q8N0Z6 440 aa11.06□□□□□ -0.64
LSM2-213ENST00000491421 RSPH6AQ9H0K4 717 aa11.06□□□□□ -0.64
LSM2-213ENST00000491421 USP42Q9H9J4 1324 aaKnown RBP11.06□□□□□ -0.64
LSM2-213ENST00000491421 KCPQ6ZWJ8 1503 aa11.05□□□□□ -0.64
LSM2-213ENST00000491421 CYP19A1P11511 503 aaPredicted RBP11.05□□□□□ -0.64
LSM2-213ENST00000491421 TJP1Q07157 1748 aa11.05□□□□□ -0.64
LSM2-213ENST00000491421 IL17REQ8NFR9 667 aa11.05□□□□□ -0.64
LSM2-213ENST00000491421 PHACTR3Q96KR7 559 aa11.05□□□□□ -0.64
LSM2-213ENST00000491421 SRP68Q9UHB9 627 aaKnown RBP11.05□□□□□ -0.64
LSM2-213ENST00000491421 WWC3Q9ULE0 1092 aa11.05□□□□□ -0.64
LSM2-213ENST00000491421 PARP3Q9Y6F1 533 aa11.05□□□□□ -0.64
LSM2-213ENST00000491421 CICQ96RK0 1608 aaPredicted RBP11.05□□□□□ -0.64
LSM2-213ENST00000491421 ADAMTS7Q9UKP4 1686 aa11.04□□□□□ -0.64
LSM2-213ENST00000491421 VSIG10Q8N0Z9 540 aa11.04□□□□□ -0.64
LSM2-213ENST00000491421 C10orf71Q711Q0 1435 aa11.03□□□□□ -0.64
LSM2-213ENST00000491421 ZPR1O75312 459 aa11.03□□□□□ -0.64
LSM2-213ENST00000491421 FCHSD2O94868 740 aa11.03□□□□□ -0.64
LSM2-213ENST00000491421 FKBP8Q14318 412 aa11.03□□□□□ -0.64
LSM2-213ENST00000491421 ZNF790Q6PG37 636 aa11.03□□□□□ -0.64
LSM2-213ENST00000491421 RTN4Q9NQC3 1192 aaKnown RBP11.03□□□□□ -0.64
LSM2-213ENST00000491421 ZBTB1Q9Y2K1 713 aa11.03□□□□□ -0.64
LSM2-213ENST00000491421 PXDNLA1KZ92 1463 aa11.03□□□□□ -0.64
LSM2-213ENST00000491421 SOS1Q07889 1333 aaPredicted RBP11.03□□□□□ -0.64
LSM2-213ENST00000491421 CEMIPQ8WUJ3 1361 aa11.03□□□□□ -0.64
LSM2-213ENST00000491421 STARD3NLO95772 234 aa11.02□□□□□ -0.65
LSM2-213ENST00000491421 TGFB2P61812 414 aa11.02□□□□□ -0.65
LSM2-213ENST00000491421 RTF1Q92541 710 aaKnown RBP11.02□□□□□ -0.65
LSM2-213ENST00000491421 ZNF496Q96IT1 587 aaPredicted RBP11.02□□□□□ -0.65
LSM2-213ENST00000491421 COL15A1P39059 1388 aa11.02□□□□□ -0.65
LSM2-213ENST00000491421 C4AP0C0L4 1744 aa11.01□□□□□ -0.65
LSM2-213ENST00000491421 A0A0G2JLW4 131 aa11.01□□□□□ -0.65
LSM2-213ENST00000491421 CANXP27824 592 aaKnown RBP11.01□□□□□ -0.65
LSM2-213ENST00000491421 DDR1Q08345 913 aa11.01□□□□□ -0.65
LSM2-213ENST00000491421 USPL1Q5W0Q7 1092 aa11.01□□□□□ -0.65
LSM2-213ENST00000491421 MYH14Q7Z406 1995 aaKnown RBP11.01□□□□□ -0.65
LSM2-213ENST00000491421 HEG1Q9ULI3 1381 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms