RNA–Protein interactions for RNA: ENST00000491402.5

VCPKMT-204, Transcript of valosin containing protein lysine methyltransferase, humanhuman

TSL 1 (best)

Gene VCPKMT, Length 1,793 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCPKMT-204ENST00000491402 MRC1P22897 1456 aa28.31■■■□□ 2.12
VCPKMT-204ENST00000491402 KAT6BQ8WYB5 2073 aa28.31■■■□□ 2.12
VCPKMT-204ENST00000491402 ZNF853P0CG23 659 aa28.31■■■□□ 2.12
VCPKMT-204ENST00000491402 GNAI1P63096 354 aa28.31■■■□□ 2.12
VCPKMT-204ENST00000491402 TEFQ10587 303 aa28.3■■■□□ 2.12
VCPKMT-204ENST00000491402 TSR2Q969E8 191 aaKnown RBP28.29■■■□□ 2.12
VCPKMT-204ENST00000491402 FANCIQ9NVI1 1328 aa28.29■■■□□ 2.12
VCPKMT-204ENST00000491402 ACSBG1Q96GR2 724 aa28.28■■■□□ 2.12
VCPKMT-204ENST00000491402 TAF7Q15545 349 aaPredicted RBP28.27■■■□□ 2.12
VCPKMT-204ENST00000491402 CHL1O00533 1208 aa28.27■■■□□ 2.12
VCPKMT-204ENST00000491402 SLC52A2Q9HAB3 445 aa28.27■■■□□ 2.12
VCPKMT-204ENST00000491402 MBIPQ9NS73 344 aa28.27■■■□□ 2.12
VCPKMT-204ENST00000491402 DOT1LQ8TEK3 1739 aa28.26■■■□□ 2.11
VCPKMT-204ENST00000491402 ITGB4P16144 1822 aa28.25■■■□□ 2.11
VCPKMT-204ENST00000491402 KDM3BQ7LBC6 1761 aa28.24■■■□□ 2.11
VCPKMT-204ENST00000491402 ERVV-2B6SEH9 535 aa28.24■■■□□ 2.11
VCPKMT-204ENST00000491402 MIS18AQ9NYP9 233 aa28.24■■■□□ 2.11
VCPKMT-204ENST00000491402 BCL9O00512 1426 aa28.24■■■□□ 2.11
VCPKMT-204ENST00000491402 KCNQ2O43526 872 aa28.24■■■□□ 2.11
VCPKMT-204ENST00000491402 TRIM37O94972 964 aa28.24■■■□□ 2.11
VCPKMT-204ENST00000491402 TSPYL4Q9UJ04 414 aa28.24■■■□□ 2.11
VCPKMT-204ENST00000491402 NFATC2IPQ8NCF5 419 aa28.23■■■□□ 2.11
VCPKMT-204ENST00000491402 BABAM1Q9NWV8 329 aa28.23■■■□□ 2.11
VCPKMT-204ENST00000491402 PRIM1P49642 420 aaKnown RBP28.22■■■□□ 2.11
VCPKMT-204ENST00000491402 CABP4P57796 275 aa28.22■■■□□ 2.11
VCPKMT-204ENST00000491402 PTF1AQ7RTS3 328 aa28.22■■■□□ 2.11
VCPKMT-204ENST00000491402 SYTL4Q96C24 671 aaPredicted RBP28.22■■■□□ 2.11
VCPKMT-204ENST00000491402 BTBD11A6QL63 1104 aa28.21■■■□□ 2.11
VCPKMT-204ENST00000491402 SBF2Q86WG5 1849 aa28.2■■■□□ 2.11
VCPKMT-204ENST00000491402 BCL11BQ9C0K0 894 aaPredicted RBP28.17■■■□□ 2.1
VCPKMT-204ENST00000491402 EXOSC9Q06265 439 aaKnown RBP28.16■■■□□ 2.1
VCPKMT-204ENST00000491402 TMOD3Q9NYL9 352 aa28.16■■■□□ 2.1
VCPKMT-204ENST00000491402 PAPPAQ13219 1627 aa28.16■■■□□ 2.1
VCPKMT-204ENST00000491402 UPF1Q92900 1129 aaKnown RBP eCLIP28.15■■■□□ 2.1
VCPKMT-204ENST00000491402 KCNQ3O43525 872 aa28.13■■■□□ 2.09
VCPKMT-204ENST00000491402 ZNF790Q6PG37 636 aa28.13■■■□□ 2.09
VCPKMT-204ENST00000491402 PIGBQ92521 554 aa28.13■■■□□ 2.09
VCPKMT-204ENST00000491402 SLC39A6Q13433 755 aa28.12■■■□□ 2.09
VCPKMT-204ENST00000491402 NHSQ6T4R5 1651 aa28.12■■■□□ 2.09
VCPKMT-204ENST00000491402 UBR2Q8IWV8 1755 aa28.11■■■□□ 2.09
VCPKMT-204ENST00000491402 APBA3O96018 575 aa28.11■■■□□ 2.09
VCPKMT-204ENST00000491402 KRT24Q2M2I5 525 aa28.11■■■□□ 2.09
VCPKMT-204ENST00000491402 C8orf58Q8NAV2 365 aa28.11■■■□□ 2.09
VCPKMT-204ENST00000491402 SF3B2Q13435 895 aaKnown RBP28.1■■■□□ 2.09
VCPKMT-204ENST00000491402 TSPYL6Q8N831 410 aa28.1■■■□□ 2.09
VCPKMT-204ENST00000491402 EIF4A1P60842 406 aaKnown RBP28.09■■■□□ 2.09
VCPKMT-204ENST00000491402 CCDC125Q86Z20 511 aa28.09■■■□□ 2.09
VCPKMT-204ENST00000491402 CT47B1P0C2W7 299 aaPredicted RBP28.09■■■□□ 2.09
VCPKMT-204ENST00000491402 TTC5Q8N0Z6 440 aa28.09■■■□□ 2.09
VCPKMT-204ENST00000491402 ELL2O00472 640 aaPredicted RBP28.07■■■□□ 2.08
VCPKMT-204ENST00000491402 TWISTNBQ3B726 338 aaPredicted RBP28.07■■■□□ 2.08
VCPKMT-204ENST00000491402 RCAN3Q9UKA8 241 aa28.07■■■□□ 2.08
VCPKMT-204ENST00000491402 BTAF1O14981 1849 aa28.06■■■□□ 2.08
VCPKMT-204ENST00000491402 TNS1Q9HBL0 1735 aaKnown RBP28.05■■■□□ 2.08
VCPKMT-204ENST00000491402 KCPQ6ZWJ8 1503 aa28.05■■■□□ 2.08
VCPKMT-204ENST00000491402 ASAP1Q9ULH1 1129 aa28.05■■■□□ 2.08
VCPKMT-204ENST00000491402 HEG1Q9ULI3 1381 aa28.05■■■□□ 2.08
VCPKMT-204ENST00000491402 VAMP4O75379 141 aa28.04■■■□□ 2.08
VCPKMT-204ENST00000491402 DEFB132Q7Z7B7 95 aa28.04■■■□□ 2.08
VCPKMT-204ENST00000491402 ZNF496Q96IT1 587 aaPredicted RBP28.04■■■□□ 2.08
VCPKMT-204ENST00000491402 ATG3Q9NT62 314 aa28.04■■■□□ 2.08
VCPKMT-204ENST00000491402 EN1Q05925 392 aaPredicted RBP28.02■■■□□ 2.08
VCPKMT-204ENST00000491402 C5P01031 1676 aa28.02■■■□□ 2.08
VCPKMT-204ENST00000491402 BAG6P46379 1132 aa28.01■■■□□ 2.08
VCPKMT-204ENST00000491402 FMNL2Q96PY5 1086 aa28.01■■■□□ 2.08
VCPKMT-204ENST00000491402 SOS1Q07889 1333 aaPredicted RBP28.01■■■□□ 2.07
VCPKMT-204ENST00000491402 ZNF428Q96B54 188 aa28.01■■■□□ 2.07
VCPKMT-204ENST00000491402 SOCS7O14512 581 aa27.99■■■□□ 2.07
VCPKMT-204ENST00000491402 PLSCR1O15162 318 aa27.99■■■□□ 2.07
VCPKMT-204ENST00000491402 GIGYF1O75420 1035 aaPredicted RBP27.99■■■□□ 2.07
VCPKMT-204ENST00000491402 HOXB7P09629 217 aa27.99■■■□□ 2.07
VCPKMT-204ENST00000491402 RARSP54136 660 aaKnown RBP27.99■■■□□ 2.07
VCPKMT-204ENST00000491402 PTCD1O75127 700 aaKnown RBP27.99■■■□□ 2.07
VCPKMT-204ENST00000491402 SMARCC1Q92922 1105 aaPredicted RBP27.97■■■□□ 2.07
VCPKMT-204ENST00000491402 LAMB4A4D0S4 1761 aa27.97■■■□□ 2.07
VCPKMT-204ENST00000491402 EZH2Q15910 746 aaKnown RBP27.96■■■□□ 2.07
VCPKMT-204ENST00000491402 CAMKK2Q96RR4 588 aa27.96■■■□□ 2.07
VCPKMT-204ENST00000491402 PALLDQ8WX93 1383 aa27.96■■■□□ 2.07
VCPKMT-204ENST00000491402 PRAMEF22A3QJZ6 481 aa27.96■■■□□ 2.07
VCPKMT-204ENST00000491402 SNRPA1P09661 255 aaKnown RBP27.95■■■□□ 2.06
VCPKMT-204ENST00000491402 SSH1Q8WYL5 1049 aa27.95■■■□□ 2.06
VCPKMT-204ENST00000491402 BCL2L13Q9BXK5 485 aa27.95■■■□□ 2.06
VCPKMT-204ENST00000491402 BCAR3O75815 825 aa27.94■■■□□ 2.06
VCPKMT-204ENST00000491402 ALDH1L2Q3SY69 923 aa27.94■■■□□ 2.06
VCPKMT-204ENST00000491402 PROM2Q8N271 834 aa27.94■■■□□ 2.06
VCPKMT-204ENST00000491402 SUPT16HQ9Y5B9 1047 aaKnown RBP27.94■■■□□ 2.06
VCPKMT-204ENST00000491402 RBM42Q9BTD8 480 aaKnown RBP27.94■■■□□ 2.06
VCPKMT-204ENST00000491402 KCNQ4P56696 695 aa27.93■■■□□ 2.06
VCPKMT-204ENST00000491402 TXNRD1Q16881 649 aa27.93■■■□□ 2.06
VCPKMT-204ENST00000491402 HDGFL1Q5TGJ6 251 aa27.93■■■□□ 2.06
VCPKMT-204ENST00000491402 SMC4Q9NTJ3 1288 aa27.92■■■□□ 2.06
VCPKMT-204ENST00000491402 CACNA1FO60840 1977 aa27.92■■■□□ 2.06
VCPKMT-204ENST00000491402 EIF2S2P20042 333 aaKnown RBP27.91■■■□□ 2.06
VCPKMT-204ENST00000491402 VSIG10Q8N0Z9 540 aa27.91■■■□□ 2.06
VCPKMT-204ENST00000491402 TCERG1O14776 1098 aaKnown RBP27.91■■■□□ 2.06
VCPKMT-204ENST00000491402 CCDC30Q5VVM6 783 aa27.91■■■□□ 2.06
VCPKMT-204ENST00000491402 NECTIN2Q92692 538 aa27.91■■■□□ 2.06
VCPKMT-204ENST00000491402 LOC102724428A0A0B4J2F2 783 aa27.9■■■□□ 2.06
VCPKMT-204ENST00000491402 SIK1P57059 783 aa27.9■■■□□ 2.06
VCPKMT-204ENST00000491402 TJP1Q07157 1748 aa27.89■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms