RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 KDRP35968 1356 aa21.48■■□□□ 1.03
SMPD4-220ENST00000491319 ITPK1Q13572 414 aa21.48■■□□□ 1.03
SMPD4-220ENST00000491319 ATG3Q9NT62 314 aa21.48■■□□□ 1.03
SMPD4-220ENST00000491319 MYH14Q7Z406 1995 aaKnown RBP21.47■■□□□ 1.03
SMPD4-220ENST00000491319 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.47■■□□□ 1.03
SMPD4-220ENST00000491319 AMER1Q5JTC6 1135 aaPredicted RBP21.47■■□□□ 1.03
SMPD4-220ENST00000491319 ZNF784Q8NCA9 323 aaPredicted RBP21.47■■□□□ 1.03
SMPD4-220ENST00000491319 ATP6V1AP38606 617 aa21.46■■□□□ 1.03
SMPD4-220ENST00000491319 PLEKHO1Q53GL0 409 aaPredicted RBP21.46■■□□□ 1.03
SMPD4-220ENST00000491319 ZNF530Q6P9A1 599 aaPredicted RBP21.46■■□□□ 1.03
SMPD4-220ENST00000491319 C4AP0C0L4 1744 aa21.46■■□□□ 1.03
SMPD4-220ENST00000491319 DCAF5Q96JK2 942 aa21.45■■□□□ 1.02
SMPD4-220ENST00000491319 ERVV-2B6SEH9 535 aa21.44■■□□□ 1.02
SMPD4-220ENST00000491319 GNPATO15228 680 aa21.44■■□□□ 1.02
SMPD4-220ENST00000491319 HSP90AB1P08238 724 aaKnown RBP21.44■■□□□ 1.02
SMPD4-220ENST00000491319 SSFA2P28290 1259 aa21.44■■□□□ 1.02
SMPD4-220ENST00000491319 AMOTQ4VCS5 1084 aa21.43■■□□□ 1.02
SMPD4-220ENST00000491319 SULT6B1Q6IMI4 303 aa21.43■■□□□ 1.02
SMPD4-220ENST00000491319 TJP1Q07157 1748 aa21.43■■□□□ 1.02
SMPD4-220ENST00000491319 YBX3P16989 372 aaKnown RBP eCLIP21.42■■□□□ 1.02
SMPD4-220ENST00000491319 IL13P35225 146 aa21.42■■□□□ 1.02
SMPD4-220ENST00000491319 SLC4A9Q96Q91 983 aa21.42■■□□□ 1.02
SMPD4-220ENST00000491319 CICQ96RK0 1608 aaPredicted RBP21.41■■□□□ 1.02
SMPD4-220ENST00000491319 KIF13BQ9NQT8 1826 aa21.41■■□□□ 1.02
SMPD4-220ENST00000491319 C1orf141Q5JVX7 400 aa21.4■■□□□ 1.02
SMPD4-220ENST00000491319 RBM42Q9BTD8 480 aaKnown RBP21.4■■□□□ 1.02
SMPD4-220ENST00000491319 CD2APQ9Y5K6 639 aa21.4■■□□□ 1.02
SMPD4-220ENST00000491319 CABP4P57796 275 aa21.39■■□□□ 1.01
SMPD4-220ENST00000491319 KIAA1551Q9HCM1 1747 aa21.38■■□□□ 1.01
SMPD4-220ENST00000491319 PER1O15534 1290 aaPredicted RBP21.38■■□□□ 1.01
SMPD4-220ENST00000491319 MTHFSP49914 203 aa21.38■■□□□ 1.01
SMPD4-220ENST00000491319 CC2D1BQ5T0F9 858 aaKnown RBP21.37■■□□□ 1.01
SMPD4-220ENST00000491319 N4BP2Q86UW6 1770 aaPredicted RBP21.37■■□□□ 1.01
SMPD4-220ENST00000491319 ADAMTS7Q9UKP4 1686 aa21.36■■□□□ 1.01
SMPD4-220ENST00000491319 CNTNAP4Q9C0A0 1308 aa21.34■■□□□ 1.01
SMPD4-220ENST00000491319 MRC1P22897 1456 aa21.34■■□□□ 1.01
SMPD4-220ENST00000491319 GRIN3BO60391 1043 aa21.34■■□□□ 1.01
SMPD4-220ENST00000491319 NFATC2IPQ8NCF5 419 aa21.34■■□□□ 1.01
SMPD4-220ENST00000491319 RTCBQ9Y3I0 505 aaKnown RBP21.34■■□□□ 1.01
SMPD4-220ENST00000491319 COL3A1P02461 1466 aaPredicted RBP21.33■■□□□ 1.01
SMPD4-220ENST00000491319 PTCD1O75127 700 aaKnown RBP21.33■■□□□ 1.01
SMPD4-220ENST00000491319 HMOX1P09601 288 aa21.33■■□□□ 1.01
SMPD4-220ENST00000491319 RC3H1Q5TC82 1133 aaKnown RBP21.32■■□□□ 1
SMPD4-220ENST00000491319 BRCA1P38398 1863 aaKnown RBP21.32■■□□□ 1
SMPD4-220ENST00000491319 UBR2Q8IWV8 1755 aa21.31■■□□□ 1
SMPD4-220ENST00000491319 MMP10P09238 476 aa21.31■■□□□ 1
SMPD4-220ENST00000491319 AKAP4Q5JQC9 854 aa21.31■■□□□ 1
SMPD4-220ENST00000491319 TRAPPC3LQ5T215 181 aa21.31■■□□□ 1
SMPD4-220ENST00000491319 WWC3Q9ULE0 1092 aa21.31■■□□□ 1
SMPD4-220ENST00000491319 CNGB1Q14028 1251 aaPredicted RBP21.3■■□□□ 1
SMPD4-220ENST00000491319 NPC1L1Q9UHC9 1359 aa21.3■■□□□ 1
SMPD4-220ENST00000491319 DIAPH1O60610 1272 aaKnown RBP21.29■■□□□ 1
SMPD4-220ENST00000491319 RPS6KA4O75676 772 aa21.29■■□□□ 1
SMPD4-220ENST00000491319 ADRA2BP18089 450 aa21.29■■□□□ 1
SMPD4-220ENST00000491319 ARHGEF1Q92888 912 aaKnown RBP21.29■■□□□ 1
SMPD4-220ENST00000491319 PXDNLA1KZ92 1463 aa21.28■■□□□ 1
SMPD4-220ENST00000491319 LGR6Q9HBX8 967 aa21.28■■□□□ 1
SMPD4-220ENST00000491319 KCPQ6ZWJ8 1503 aa21.28■■□□□ 1
SMPD4-220ENST00000491319 SIPA1L3O60292 1781 aaPredicted RBP21.28■■□□□ 1
SMPD4-220ENST00000491319 CRKLP46109 303 aaKnown RBP21.27■■□□□ 1
SMPD4-220ENST00000491319 SLC52A2Q9HAB3 445 aa21.27■■□□□ 1
SMPD4-220ENST00000491319 C10orf71Q711Q0 1435 aa21.27■■□□□ 1
SMPD4-220ENST00000491319 GYS1P13807 737 aa21.26■□□□□ 0.99
SMPD4-220ENST00000491319 RFC4P35249 363 aa21.26■□□□□ 0.99
SMPD4-220ENST00000491319 RNMTO43148 476 aaKnown RBP21.25■□□□□ 0.99
SMPD4-220ENST00000491319 MTHFSDQ2M296 383 aaKnown RBP21.25■□□□□ 0.99
SMPD4-220ENST00000491319 NLGN1Q8N2Q7 840 aa21.25■□□□□ 0.99
SMPD4-220ENST00000491319 ATP10DQ9P241 1426 aa21.24■□□□□ 0.99
SMPD4-220ENST00000491319 C1QTNF8P60827 252 aa21.23■□□□□ 0.99
SMPD4-220ENST00000491319 SLC39A6Q13433 755 aa21.23■□□□□ 0.99
SMPD4-220ENST00000491319 ADCY9O60503 1353 aa21.23■□□□□ 0.99
SMPD4-220ENST00000491319 AFDNP55196 1824 aaKnown RBP21.22■□□□□ 0.99
SMPD4-220ENST00000491319 ARFGEF1Q9Y6D6 1849 aa21.22■□□□□ 0.99
SMPD4-220ENST00000491319 GIGYF1O75420 1035 aaPredicted RBP21.22■□□□□ 0.99
SMPD4-220ENST00000491319 DNAJC10Q8IXB1 793 aa21.22■□□□□ 0.99
SMPD4-220ENST00000491319 SRP68Q9UHB9 627 aaKnown RBP21.22■□□□□ 0.99
SMPD4-220ENST00000491319 USP42Q9H9J4 1324 aaKnown RBP21.21■□□□□ 0.99
SMPD4-220ENST00000491319 U2SURPO15042 1029 aaKnown RBP21.2■□□□□ 0.98
SMPD4-220ENST00000491319 INTS5Q6P9B9 1019 aaKnown RBP21.2■□□□□ 0.98
SMPD4-220ENST00000491319 CCDC87Q9NVE4 849 aa21.2■□□□□ 0.98
SMPD4-220ENST00000491319 PARP3Q9Y6F1 533 aa21.19■□□□□ 0.98
SMPD4-220ENST00000491319 FKBP8Q14318 412 aa21.18■□□□□ 0.98
SMPD4-220ENST00000491319 A0A0G2JLW4 131 aa21.17■□□□□ 0.98
SMPD4-220ENST00000491319 TGFB2P61812 414 aa21.17■□□□□ 0.98
SMPD4-220ENST00000491319 SOS1Q07889 1333 aaPredicted RBP21.17■□□□□ 0.98
SMPD4-220ENST00000491319 SENP3-EIF4A1A0A087X0R7 540 aa21.16■□□□□ 0.98
SMPD4-220ENST00000491319 CYP19A1P11511 503 aaPredicted RBP21.16■□□□□ 0.98
SMPD4-220ENST00000491319 DDR1Q08345 913 aa21.16■□□□□ 0.98
SMPD4-220ENST00000491319 NRXN2Q9P2S2 1712 aa21.15■□□□□ 0.98
SMPD4-220ENST00000491319 COL15A1P39059 1388 aa21.15■□□□□ 0.98
SMPD4-220ENST00000491319 DPEP1P16444 411 aa21.15■□□□□ 0.98
SMPD4-220ENST00000491319 BCS1LQ9Y276 419 aa21.15■□□□□ 0.98
SMPD4-220ENST00000491319 ZBTB1Q9Y2K1 713 aa21.14■□□□□ 0.97
SMPD4-220ENST00000491319 DLEC1Q9Y238 1755 aa21.14■□□□□ 0.97
SMPD4-220ENST00000491319 SCN7AQ01118 1682 aa21.13■□□□□ 0.97
SMPD4-220ENST00000491319 GAS2L2Q8NHY3 880 aa21.13■□□□□ 0.97
SMPD4-220ENST00000491319 ZNF526Q8TF50 670 aaPredicted RBP21.13■□□□□ 0.97
SMPD4-220ENST00000491319 GNAT3A8MTJ3 354 aa21.12■□□□□ 0.97
SMPD4-220ENST00000491319 USPL1Q5W0Q7 1092 aa21.12■□□□□ 0.97
SMPD4-220ENST00000491319 VSIG10Q8N0Z9 540 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms