RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 PLEKHH2Q8IVE3 1493 aa7.84□□□□□ -1.15
VPS41-214ENST00000490924 PDE3BQ13370 1112 aa7.84□□□□□ -1.15
VPS41-214ENST00000490924 VASH1Q7L8A9 365 aaPredicted RBP7.84□□□□□ -1.15
VPS41-214ENST00000490924 AK7Q96M32 723 aa7.84□□□□□ -1.15
VPS41-214ENST00000490924 TSEN34Q9BSV6 310 aaKnown RBP7.84□□□□□ -1.15
VPS41-214ENST00000490924 HIRIP3Q9BW71 556 aaPredicted RBP7.84□□□□□ -1.15
VPS41-214ENST00000490924 MAP10Q9P2G4 905 aa7.84□□□□□ -1.15
VPS41-214ENST00000490924 NUDCQ9Y266 331 aa7.84□□□□□ -1.15
VPS41-214ENST00000490924 EMILIN1Q9Y6C2 1016 aa7.84□□□□□ -1.15
VPS41-214ENST00000490924 PRG4Q92954 1404 aaPredicted RBP7.84□□□□□ -1.15
VPS41-214ENST00000490924 ERBB4Q15303 1308 aa7.83□□□□□ -1.16
VPS41-214ENST00000490924 LCE2CQ5TA81 110 aa7.83□□□□□ -1.16
VPS41-214ENST00000490924 ZC3H15Q8WU90 426 aaKnown RBP7.83□□□□□ -1.16
VPS41-214ENST00000490924 ITPKCQ96DU7 683 aa7.83□□□□□ -1.16
VPS41-214ENST00000490924 ZFAND3Q9H8U3 227 aa7.83□□□□□ -1.16
VPS41-214ENST00000490924 PGPEP1Q9NXJ5 209 aa7.83□□□□□ -1.16
VPS41-214ENST00000490924 CCDC141Q6ZP82 1450 aa7.82□□□□□ -1.16
VPS41-214ENST00000490924 MAGEB6P1A0A0J9YX57 407 aa7.82□□□□□ -1.16
VPS41-214ENST00000490924 CFAP99D6REC4 459 aa7.82□□□□□ -1.16
VPS41-214ENST00000490924 LINC00528Q8N1L1 170 aa7.82□□□□□ -1.16
VPS41-214ENST00000490924 BCANQ96GW7 911 aa7.82□□□□□ -1.16
VPS41-214ENST00000490924 PCDHB15Q9Y5E8 787 aa7.82□□□□□ -1.16
VPS41-214ENST00000490924 PLB1Q6P1J6 1458 aa7.81□□□□□ -1.16
VPS41-214ENST00000490924 PLEKHD1A6NEE1 506 aa7.81□□□□□ -1.16
VPS41-214ENST00000490924 SOBPA7XYQ1 873 aa7.81□□□□□ -1.16
VPS41-214ENST00000490924 RNF225M0QZC1 329 aaPredicted RBP7.81□□□□□ -1.16
VPS41-214ENST00000490924 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.81□□□□□ -1.16
VPS41-214ENST00000490924 PNISRQ8TF01 805 aaKnown RBP7.81□□□□□ -1.16
VPS41-214ENST00000490924 RSPH6AQ9H0K4 717 aa7.81□□□□□ -1.16
VPS41-214ENST00000490924 E9PCH4 1651 aa7.81□□□□□ -1.16
VPS41-214ENST00000490924 MAGI2Q86UL8 1455 aa7.81□□□□□ -1.16
VPS41-214ENST00000490924 CDC42BPAQ5VT25 1732 aa7.81□□□□□ -1.16
VPS41-214ENST00000490924 MYBBP1AQ9BQG0 1328 aaKnown RBP7.8□□□□□ -1.16
VPS41-214ENST00000490924 UNC13BO14795 1591 aa7.8□□□□□ -1.16
VPS41-214ENST00000490924 PLXNC1O60486 1568 aa7.8□□□□□ -1.16
VPS41-214ENST00000490924 F12P00748 615 aaPredicted RBP7.8□□□□□ -1.16
VPS41-214ENST00000490924 TSPY4P0CV99 314 aa7.8□□□□□ -1.16
VPS41-214ENST00000490924 TSPY10P0CW01 314 aa7.8□□□□□ -1.16
VPS41-214ENST00000490924 VSIG8P0DPA2 414 aa7.8□□□□□ -1.16
VPS41-214ENST00000490924 FSHRP23945 695 aa7.8□□□□□ -1.16
VPS41-214ENST00000490924 PARP9Q8IXQ6 854 aa7.8□□□□□ -1.16
VPS41-214ENST00000490924 CABLES1Q8TDN4 633 aa7.8□□□□□ -1.16
VPS41-214ENST00000490924 GPKOWQ92917 476 aaPredicted RBP eCLIP7.8□□□□□ -1.16
VPS41-214ENST00000490924 EIF2AK4Q9P2K8 1649 aaKnown RBP7.8□□□□□ -1.16
VPS41-214ENST00000490924 ATP10BO94823 1461 aa7.8□□□□□ -1.16
VPS41-214ENST00000490924 NEURL4Q96JN8 1562 aa7.8□□□□□ -1.16
VPS41-214ENST00000490924 PPFIA3O75145 1194 aa7.79□□□□□ -1.16
VPS41-214ENST00000490924 CCDC116Q8IYX3 515 aa7.79□□□□□ -1.16
VPS41-214ENST00000490924 MEIOBQ8N635 442 aa7.79□□□□□ -1.16
VPS41-214ENST00000490924 PNMA1Q8ND90 353 aa7.79□□□□□ -1.16
VPS41-214ENST00000490924 NUP155O75694 1391 aa7.79□□□□□ -1.16
VPS41-214ENST00000490924 PARD3Q8TEW0 1356 aa7.79□□□□□ -1.16
VPS41-214ENST00000490924 ZNF644Q9H582 1327 aaPredicted RBP7.78□□□□□ -1.16
VPS41-214ENST00000490924 PRAG1Q86YV5 1406 aa7.78□□□□□ -1.16
VPS41-214ENST00000490924 PREX2Q70Z35 1606 aa7.78□□□□□ -1.16
VPS41-214ENST00000490924 BCORL1Q5H9F3 1711 aa7.78□□□□□ -1.16
VPS41-214ENST00000490924 TRIM66O15016 1216 aa7.78□□□□□ -1.16
VPS41-214ENST00000490924 SLC24A1O60721 1099 aa7.78□□□□□ -1.16
VPS41-214ENST00000490924 NLRP13Q86W25 1043 aa7.78□□□□□ -1.16
VPS41-214ENST00000490924 CHMP7Q8WUX9 453 aaPredicted RBP7.78□□□□□ -1.16
VPS41-214ENST00000490924 KLF16Q9BXK1 252 aaPredicted RBP7.78□□□□□ -1.16
VPS41-214ENST00000490924 CARD14Q9BXL6 1004 aa7.78□□□□□ -1.16
VPS41-214ENST00000490924 CDV3Q9UKY7 258 aaKnown RBP7.78□□□□□ -1.16
VPS41-214ENST00000490924 MAP4K5Q9Y4K4 846 aa7.78□□□□□ -1.16
VPS41-214ENST00000490924 FAM135AQ9P2D6 1515 aa7.78□□□□□ -1.16
VPS41-214ENST00000490924 ERBINQ96RT1 1412 aa7.78□□□□□ -1.16
VPS41-214ENST00000490924 TTLL8A6PVC2 850 aa7.77□□□□□ -1.17
VPS41-214ENST00000490924 DHX9Q08211 1270 aaKnown RBP7.77□□□□□ -1.17
VPS41-214ENST00000490924 PRDM15P57071 1507 aaPredicted RBP7.77□□□□□ -1.17
VPS41-214ENST00000490924 ARAP3Q8WWN8 1544 aa7.77□□□□□ -1.17
VPS41-214ENST00000490924 COL17A1Q9UMD9 1497 aaPredicted RBP7.76□□□□□ -1.17
VPS41-214ENST00000490924 NR3C2P08235 984 aa7.76□□□□□ -1.17
VPS41-214ENST00000490924 GRM5P41594 1212 aa7.76□□□□□ -1.17
VPS41-214ENST00000490924 TUSC1Q2TAM9 212 aa7.76□□□□□ -1.17
VPS41-214ENST00000490924 CCDC184Q52MB2 194 aa7.76□□□□□ -1.17
VPS41-214ENST00000490924 ZBTB33Q86T24 672 aa7.76□□□□□ -1.17
VPS41-214ENST00000490924 FAM9BQ8IZU0 186 aa7.76□□□□□ -1.17
VPS41-214ENST00000490924 SLC10A4Q96EP9 437 aa7.76□□□□□ -1.17
VPS41-214ENST00000490924 CARD11Q9BXL7 1154 aa7.76□□□□□ -1.17
VPS41-214ENST00000490924 IQGAP3Q86VI3 1631 aa7.76□□□□□ -1.17
VPS41-214ENST00000490924 CCDC144AA2RUR9 1427 aa7.76□□□□□ -1.17
VPS41-214ENST00000490924 TRPM1Q7Z4N2 1603 aa7.75□□□□□ -1.17
VPS41-214ENST00000490924 NPC1L1Q9UHC9 1359 aa7.75□□□□□ -1.17
VPS41-214ENST00000490924 DUOX2Q9NRD8 1548 aa7.75□□□□□ -1.17
VPS41-214ENST00000490924 ERICH6Q7L0X2 663 aa7.75□□□□□ -1.17
VPS41-214ENST00000490924 TRMT44Q8IYL2 757 aaKnown RBP7.75□□□□□ -1.17
VPS41-214ENST00000490924 TMEM151AQ8N4L1 468 aa7.75□□□□□ -1.17
VPS41-214ENST00000490924 TMC1Q8TDI8 760 aa7.75□□□□□ -1.17
VPS41-214ENST00000490924 BLMP54132 1417 aaPredicted RBP7.75□□□□□ -1.17
VPS41-214ENST00000490924 TCERG1O14776 1098 aaKnown RBP7.74□□□□□ -1.17
VPS41-214ENST00000490924 PER1O15534 1290 aaPredicted RBP7.74□□□□□ -1.17
VPS41-214ENST00000490924 NGEFQ8N5V2 710 aa7.74□□□□□ -1.17
VPS41-214ENST00000490924 ARHGAP9Q9BRR9 750 aa7.74□□□□□ -1.17
VPS41-214ENST00000490924 SOS2Q07890 1332 aaPredicted RBP7.74□□□□□ -1.17
VPS41-214ENST00000490924 SHROOM2Q13796 1616 aa7.74□□□□□ -1.17
VPS41-214ENST00000490924 SAMD9LQ8IVG5 1584 aa7.73□□□□□ -1.17
VPS41-214ENST00000490924 RTEL1-TNFRSF6BF6WH68 1400 aa7.73□□□□□ -1.17
VPS41-214ENST00000490924 CLK2P49760 499 aaKnown RBP7.73□□□□□ -1.17
VPS41-214ENST00000490924 MYSM1Q5VVJ2 828 aa7.73□□□□□ -1.17
VPS41-214ENST00000490924 C1QTNF2Q9BXJ5 285 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms