RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 CARD10Q9BWT7 1032 aa9.06□□□□□ -0.96
SYNE1-229ENST00000490866 RTN4Q9NQC3 1192 aaKnown RBP9.06□□□□□ -0.96
SYNE1-229ENST00000490866 WDR17Q8IZU2 1322 aa9.05□□□□□ -0.96
SYNE1-229ENST00000490866 COL22A1Q8NFW1 1626 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-229ENST00000490866 KIAA0232Q92628 1395 aa9.05□□□□□ -0.96
SYNE1-229ENST00000490866 FBLN1P23142 703 aa9.05□□□□□ -0.96
SYNE1-229ENST00000490866 HMGB2P26583 209 aaKnown RBP9.05□□□□□ -0.96
SYNE1-229ENST00000490866 GNAI1P63096 354 aa9.05□□□□□ -0.96
SYNE1-229ENST00000490866 PHLPP1O60346 1717 aa9.05□□□□□ -0.96
SYNE1-229ENST00000490866 SOS1Q07889 1333 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-229ENST00000490866 LTN1O94822 1766 aa9.04□□□□□ -0.96
SYNE1-229ENST00000490866 FAM208AQ9UK61 1670 aaKnown RBP9.04□□□□□ -0.96
SYNE1-229ENST00000490866 FAM83GA6ND36 823 aa9.04□□□□□ -0.96
SYNE1-229ENST00000490866 GNAT3A8MTJ3 354 aa9.04□□□□□ -0.96
SYNE1-229ENST00000490866 TATP17735 454 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-229ENST00000490866 C1orf141Q5JVX7 400 aa9.04□□□□□ -0.96
SYNE1-229ENST00000490866 NBPF6Q5VWK0 638 aa9.04□□□□□ -0.96
SYNE1-229ENST00000490866 CABLES1Q8TDN4 633 aa9.04□□□□□ -0.96
SYNE1-229ENST00000490866 FAM163AQ96GL9 167 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-229ENST00000490866 NBPF4Q96M43 638 aa9.04□□□□□ -0.96
SYNE1-229ENST00000490866 NLRP2Q9NX02 1062 aa9.04□□□□□ -0.96
SYNE1-229ENST00000490866 ZBTB7CA1YPR0 619 aa9.03□□□□□ -0.96
SYNE1-229ENST00000490866 HMOX1P09601 288 aa9.03□□□□□ -0.96
SYNE1-229ENST00000490866 AKAP4Q5JQC9 854 aa9.03□□□□□ -0.96
SYNE1-229ENST00000490866 TOM1L2Q6ZVM7 507 aa9.03□□□□□ -0.96
SYNE1-229ENST00000490866 CCDC146Q8IYE0 955 aa9.03□□□□□ -0.96
SYNE1-229ENST00000490866 LTV1Q96GA3 475 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-229ENST00000490866 AXIN2Q9Y2T1 843 aa9.03□□□□□ -0.96
SYNE1-229ENST00000490866 SHPRHQ149N8 1683 aa9.03□□□□□ -0.96
SYNE1-229ENST00000490866 ZNF521Q96K83 1311 aa9.03□□□□□ -0.96
SYNE1-229ENST00000490866 MARF1Q9Y4F3 1742 aaKnown RBP9.02□□□□□ -0.96
SYNE1-229ENST00000490866 SLFN5Q08AF3 891 aa9.02□□□□□ -0.97
SYNE1-229ENST00000490866 ERICH6BQ5W0A0 696 aa9.02□□□□□ -0.97
SYNE1-229ENST00000490866 TRMT2AQ8IZ69 625 aaKnown RBP9.02□□□□□ -0.97
SYNE1-229ENST00000490866 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-229ENST00000490866 CFAP44Q96MT7 982 aa9.02□□□□□ -0.97
SYNE1-229ENST00000490866 IFT57Q9NWB7 429 aa9.02□□□□□ -0.97
SYNE1-229ENST00000490866 NCAPD2Q15021 1401 aa9.02□□□□□ -0.97
SYNE1-229ENST00000490866 MS4A1P11836 297 aa9.01□□□□□ -0.97
SYNE1-229ENST00000490866 IL2RBP14784 551 aa9.01□□□□□ -0.97
SYNE1-229ENST00000490866 NKX1-1Q15270 411 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-229ENST00000490866 NEUROD2Q15784 382 aa9.01□□□□□ -0.97
SYNE1-229ENST00000490866 IFNL2Q8IZJ0 200 aa9.01□□□□□ -0.97
SYNE1-229ENST00000490866 BTG4Q9NY30 223 aa9.01□□□□□ -0.97
SYNE1-229ENST00000490866 COL14A1Q05707 1796 aaKnown RBP9.01□□□□□ -0.97
SYNE1-229ENST00000490866 COL16A1Q07092 1604 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-229ENST00000490866 CRB1P82279 1406 aa9□□□□□ -0.97
SYNE1-229ENST00000490866 FNBP4Q8N3X1 1017 aaPredicted RBP9□□□□□ -0.97
SYNE1-229ENST00000490866 NGLY1Q96IV0 654 aa9□□□□□ -0.97
SYNE1-229ENST00000490866 PHACTR3Q96KR7 559 aa9□□□□□ -0.97
SYNE1-229ENST00000490866 RGPD1P0DJD0 1748 aa9□□□□□ -0.97
SYNE1-229ENST00000490866 PEAK1Q9H792 1746 aa9□□□□□ -0.97
SYNE1-229ENST00000490866 EXOC5O00471 708 aa8.99□□□□□ -0.97
SYNE1-229ENST00000490866 NEFLP07196 543 aa8.99□□□□□ -0.97
SYNE1-229ENST00000490866 TAF7Q15545 349 aaPredicted RBP8.99□□□□□ -0.97
SYNE1-229ENST00000490866 CHRNA2Q15822 529 aa8.99□□□□□ -0.97
SYNE1-229ENST00000490866 MTHFSDQ2M296 383 aaKnown RBP8.99□□□□□ -0.97
SYNE1-229ENST00000490866 BARGINQ6ZT62 677 aa8.99□□□□□ -0.97
SYNE1-229ENST00000490866 UNC5CLQ8IV45 518 aa8.99□□□□□ -0.97
SYNE1-229ENST00000490866 ZCRB1Q8TBF4 217 aaKnown RBP8.99□□□□□ -0.97
SYNE1-229ENST00000490866 BBXQ8WY36 941 aaPredicted RBP8.99□□□□□ -0.97
SYNE1-229ENST00000490866 DCAF5Q96JK2 942 aa8.99□□□□□ -0.97
SYNE1-229ENST00000490866 CRYBG1Q9Y4K1 1723 aa8.99□□□□□ -0.97
SYNE1-229ENST00000490866 COL18A1P39060 1754 aa8.99□□□□□ -0.97
SYNE1-229ENST00000490866 OVOS2A0A0G2JMS6 1433 aa8.98□□□□□ -0.97
SYNE1-229ENST00000490866 COL5A2P05997 1499 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-229ENST00000490866 ERVV-2B6SEH9 535 aa8.98□□□□□ -0.97
SYNE1-229ENST00000490866 DOK7Q18PE1 504 aa8.98□□□□□ -0.97
SYNE1-229ENST00000490866 MEX3CQ5U5Q3 659 aaKnown RBP8.98□□□□□ -0.97
SYNE1-229ENST00000490866 FBXO41Q8TF61 875 aa8.98□□□□□ -0.97
SYNE1-229ENST00000490866 PCDH11XQ9BZA7 1347 aa8.98□□□□□ -0.97
SYNE1-229ENST00000490866 PCDH11YQ9BZA8 1340 aa8.98□□□□□ -0.97
SYNE1-229ENST00000490866 MAP3K5Q99683 1374 aa8.98□□□□□ -0.97
SYNE1-229ENST00000490866 CHL1O00533 1208 aa8.97□□□□□ -0.97
SYNE1-229ENST00000490866 PPP1R37O75864 691 aa8.97□□□□□ -0.97
SYNE1-229ENST00000490866 HSPA1LP34931 641 aa8.97□□□□□ -0.97
SYNE1-229ENST00000490866 TEFQ10587 303 aa8.97□□□□□ -0.97
SYNE1-229ENST00000490866 AAMPQ13685 434 aa8.97□□□□□ -0.97
SYNE1-229ENST00000490866 VPS72Q15906 364 aa8.97□□□□□ -0.97
SYNE1-229ENST00000490866 DUSP27Q5VZP5 1158 aa8.97□□□□□ -0.97
SYNE1-229ENST00000490866 AEBP1Q8IUX7 1158 aa8.97□□□□□ -0.97
SYNE1-229ENST00000490866 CHMP4BQ9H444 224 aaKnown RBP8.97□□□□□ -0.97
SYNE1-229ENST00000490866 STRN4Q9NRL3 753 aa8.97□□□□□ -0.97
SYNE1-229ENST00000490866 PCDH10Q9P2E7 1040 aa8.97□□□□□ -0.97
SYNE1-229ENST00000490866 SALL2Q9Y467 1007 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-229ENST00000490866 CAMTA1Q9Y6Y1 1673 aa8.97□□□□□ -0.97
SYNE1-229ENST00000490866 NUTM2BA6NNL0 878 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-229ENST00000490866 NUTM2EB1AL46 878 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-229ENST00000490866 IPO8O15397 1037 aaKnown RBP8.96□□□□□ -0.98
SYNE1-229ENST00000490866 GTPBP6O43824 516 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-229ENST00000490866 ST18O60284 1047 aa8.96□□□□□ -0.98
SYNE1-229ENST00000490866 ADAMTS2O95450 1211 aa8.96□□□□□ -0.98
SYNE1-229ENST00000490866 HOXB7P09629 217 aa8.96□□□□□ -0.98
SYNE1-229ENST00000490866 ZNF853P0CG23 659 aa8.96□□□□□ -0.98
SYNE1-229ENST00000490866 ALDH1L2Q3SY69 923 aa8.96□□□□□ -0.98
SYNE1-229ENST00000490866 ZNF772Q68DY9 489 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-229ENST00000490866 ZNF530Q6P9A1 599 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-229ENST00000490866 TMEM92Q6UXU6 159 aa8.96□□□□□ -0.98
SYNE1-229ENST00000490866 NUTM2AQ8IVF1 878 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-229ENST00000490866 RCAN3Q9UKA8 241 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms