RNA–Protein interactions for RNA: ENST00000490812.5

PTPN18-215, Transcript of protein tyrosine phosphatase, non-receptor type 18, human

TSL 5

Gene PTPN18, Length 833 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN18-215	ENST00000490812	MSH5	O43196	834 aa		28.8	■■■□□ 2.2
PTPN18-215	ENST00000490812	COL3A1	P02461	1466 aa	Predicted RBP	28.78	■■■□□ 2.2
PTPN18-215	ENST00000490812	SCN11A	Q9UI33	1791 aa		28.78	■■■□□ 2.2
PTPN18-215	ENST00000490812	ATP6V1A	P38606	617 aa		28.77	■■■□□ 2.2
PTPN18-215	ENST00000490812	CABP4	P57796	275 aa		28.77	■■■□□ 2.2
PTPN18-215	ENST00000490812	LINC00116	Q8NCU8	138 aa		28.76	■■■□□ 2.19
PTPN18-215	ENST00000490812	ITPK1	Q13572	414 aa		28.75	■■■□□ 2.19
PTPN18-215	ENST00000490812	AKAP4	Q5JQC9	854 aa		28.75	■■■□□ 2.19
PTPN18-215	ENST00000490812	HMOX1	P09601	288 aa		28.74	■■■□□ 2.19
PTPN18-215	ENST00000490812	CNGB1	Q14028	1251 aa	Predicted RBP	28.74	■■■□□ 2.19
PTPN18-215	ENST00000490812	SSFA2	P28290	1259 aa		28.73	■■■□□ 2.19
PTPN18-215	ENST00000490812	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	28.71	■■■□□ 2.19
PTPN18-215	ENST00000490812	COL5A3	P25940	1745 aa	Predicted RBP	28.71	■■■□□ 2.19
PTPN18-215	ENST00000490812	AMIGO3	Q86WK7	504 aa		28.7	■■■□□ 2.18
PTPN18-215	ENST00000490812	MSL1	Q68DK7	614 aa		28.69	■■■□□ 2.18
PTPN18-215	ENST00000490812	NFATC2IP	Q8NCF5	419 aa		28.69	■■■□□ 2.18
PTPN18-215	ENST00000490812	RBM42	Q9BTD8	480 aa	Known RBP	28.69	■■■□□ 2.18
PTPN18-215	ENST00000490812	VIRMA	Q69YN4	1812 aa	Known RBP	28.69	■■■□□ 2.18
PTPN18-215	ENST00000490812	ADAMTS7	Q9UKP4	1686 aa		28.68	■■■□□ 2.18
PTPN18-215	ENST00000490812	MRC1	P22897	1456 aa		28.68	■■■□□ 2.18
PTPN18-215	ENST00000490812	GNPAT	O15228	680 aa		28.68	■■■□□ 2.18
PTPN18-215	ENST00000490812	PHF14	O94880	888 aa		28.68	■■■□□ 2.18
PTPN18-215	ENST00000490812	SLC4A9	Q96Q91	983 aa		28.68	■■■□□ 2.18
PTPN18-215	ENST00000490812	CFAP53	Q96M91	514 aa		28.67	■■■□□ 2.18
PTPN18-215	ENST00000490812	CIC	Q96RK0	1608 aa	Predicted RBP	28.66	■■■□□ 2.18
PTPN18-215	ENST00000490812	KLHL34	Q8N239	644 aa		28.66	■■■□□ 2.18
PTPN18-215	ENST00000490812	U2SURP	O15042	1029 aa	Known RBP	28.65	■■■□□ 2.18
PTPN18-215	ENST00000490812	YY1	P25490	414 aa		28.65	■■■□□ 2.18
PTPN18-215	ENST00000490812	MTHFSD	Q2M296	383 aa	Known RBP	28.65	■■■□□ 2.18
PTPN18-215	ENST00000490812	RC3H1	Q5TC82	1133 aa	Known RBP	28.65	■■■□□ 2.18
PTPN18-215	ENST00000490812	CNTNAP4	Q9C0A0	1308 aa		28.65	■■■□□ 2.18
PTPN18-215	ENST00000490812	UTRN	P46939	3433 aa		28.64	■■■□□ 2.18
PTPN18-215	ENST00000490812	SLC52A2	Q9HAB3	445 aa		28.64	■■■□□ 2.18
PTPN18-215	ENST00000490812	RNMT	O43148	476 aa	Known RBP	28.63	■■■□□ 2.17
PTPN18-215	ENST00000490812	SMIM5	Q71RC9	77 aa		28.62	■■■□□ 2.17
PTPN18-215	ENST00000490812	LGR6	Q9HBX8	967 aa		28.62	■■■□□ 2.17
PTPN18-215	ENST00000490812	RTCB	Q9Y3I0	505 aa	Known RBP	28.62	■■■□□ 2.17
PTPN18-215	ENST00000490812	PTCD1	O75127	700 aa	Known RBP	28.61	■■■□□ 2.17
PTPN18-215	ENST00000490812	PPP2R1A	P30153	589 aa		28.61	■■■□□ 2.17
PTPN18-215	ENST00000490812	ADRA2B	P18089	450 aa		28.6	■■■□□ 2.17
PTPN18-215	ENST00000490812	TJP1	Q07157	1748 aa		28.6	■■■□□ 2.17
PTPN18-215	ENST00000490812	MYH14	Q7Z406	1995 aa	Known RBP	28.59	■■■□□ 2.17
PTPN18-215	ENST00000490812	GAS2L2	Q8NHY3	880 aa		28.59	■■■□□ 2.17
PTPN18-215	ENST00000490812	TRAPPC3L	Q5T215	181 aa		28.58	■■■□□ 2.17
PTPN18-215	ENST00000490812	NLGN2	Q8NFZ4	835 aa		28.58	■■■□□ 2.17
PTPN18-215	ENST00000490812	NUDC	Q9Y266	331 aa		28.58	■■■□□ 2.17
PTPN18-215	ENST00000490812	CD2AP	Q9Y5K6	639 aa		28.58	■■■□□ 2.17
PTPN18-215	ENST00000490812	CHD4	Q14839	1912 aa		28.58	■■■□□ 2.17
PTPN18-215	ENST00000490812	RPS6KA4	O75676	772 aa		28.56	■■■□□ 2.16
PTPN18-215	ENST00000490812	GPR162	Q16538	588 aa		28.56	■■■□□ 2.16
PTPN18-215	ENST00000490812	C4A	P0C0L4	1744 aa		28.53	■■■□□ 2.16
PTPN18-215	ENST00000490812	GNAT3	A8MTJ3	354 aa		28.53	■■■□□ 2.16
PTPN18-215	ENST00000490812	CRKL	P46109	303 aa	Known RBP	28.53	■■■□□ 2.16
PTPN18-215	ENST00000490812	RSPH6A	Q9H0K4	717 aa		28.53	■■■□□ 2.16
PTPN18-215	ENST00000490812	KCP	Q6ZWJ8	1503 aa		28.53	■■■□□ 2.16
PTPN18-215	ENST00000490812	ARHGEF1	Q92888	912 aa	Known RBP	28.52	■■■□□ 2.16
PTPN18-215	ENST00000490812	UBR2	Q8IWV8	1755 aa		28.52	■■■□□ 2.16
PTPN18-215	ENST00000490812	PRKAR2B	P31323	418 aa		28.51	■■■□□ 2.15
PTPN18-215	ENST00000490812	NLGN1	Q8N2Q7	840 aa		28.51	■■■□□ 2.15
PTPN18-215	ENST00000490812	GOLGB1	Q14789	3259 aa	Known RBP	28.51	■■■□□ 2.15
PTPN18-215	ENST00000490812	RFC4	P35249	363 aa		28.5	■■■□□ 2.15
PTPN18-215	ENST00000490812	SIPA1L3	O60292	1781 aa	Predicted RBP	28.5	■■■□□ 2.15
PTPN18-215	ENST00000490812	U2AF1L5	P0DN76	240 aa	Predicted RBP	28.49	■■■□□ 2.15
PTPN18-215	ENST00000490812	U2AF1	Q01081	240 aa	Known RBP eCLIP	28.49	■■■□□ 2.15
PTPN18-215	ENST00000490812	SLC39A6	Q13433	755 aa		28.49	■■■□□ 2.15
PTPN18-215	ENST00000490812	PELP1	Q8IZL8	1130 aa	Known RBP	28.48	■■■□□ 2.15
PTPN18-215	ENST00000490812	VSIG10	Q8N0Z9	540 aa		28.48	■■■□□ 2.15
PTPN18-215	ENST00000490812	FCHSD2	O94868	740 aa		28.47	■■■□□ 2.15
PTPN18-215	ENST00000490812	MMP10	P09238	476 aa		28.47	■■■□□ 2.15
PTPN18-215	ENST00000490812	TEF	Q10587	303 aa		28.47	■■■□□ 2.15
PTPN18-215	ENST00000490812	DNAJC10	Q8IXB1	793 aa		28.47	■■■□□ 2.15
PTPN18-215	ENST00000490812	IL17RE	Q8NFR9	667 aa		28.47	■■■□□ 2.15
PTPN18-215	ENST00000490812	PHACTR3	Q96KR7	559 aa		28.47	■■■□□ 2.15
PTPN18-215	ENST00000490812	GYS1	P13807	737 aa		28.46	■■■□□ 2.15
PTPN18-215	ENST00000490812	INTS5	Q6P9B9	1019 aa	Known RBP	28.46	■■■□□ 2.15
PTPN18-215	ENST00000490812	CEMIP	Q8WUJ3	1361 aa		28.46	■■■□□ 2.15
PTPN18-215	ENST00000490812	CCDC87	Q9NVE4	849 aa		28.45	■■■□□ 2.14
PTPN18-215	ENST00000490812	KIF13B	Q9NQT8	1826 aa		28.44	■■■□□ 2.14
PTPN18-215	ENST00000490812	GRIN3B	O60391	1043 aa		28.44	■■■□□ 2.14
PTPN18-215	ENST00000490812	TTC5	Q8N0Z6	440 aa		28.44	■■■□□ 2.14
PTPN18-215	ENST00000490812	CYP19A1	P11511	503 aa	Predicted RBP	28.43	■■■□□ 2.14
PTPN18-215	ENST00000490812	YBX3	P16989	372 aa	Known RBP eCLIP	28.42	■■■□□ 2.14
PTPN18-215	ENST00000490812	USP42	Q9H9J4	1324 aa	Known RBP	28.42	■■■□□ 2.14
PTPN18-215	ENST00000490812	ZNF790	Q6PG37	636 aa		28.4	■■■□□ 2.14
PTPN18-215	ENST00000490812	SOS1	Q07889	1333 aa	Predicted RBP	28.4	■■■□□ 2.14
PTPN18-215	ENST00000490812	C10orf71	Q711Q0	1435 aa		28.38	■■■□□ 2.13
PTPN18-215	ENST00000490812	SRP68	Q9UHB9	627 aa	Known RBP	28.37	■■■□□ 2.13
PTPN18-215	ENST00000490812	PARP3	Q9Y6F1	533 aa		28.37	■■■□□ 2.13
PTPN18-215	ENST00000490812	HEG1	Q9ULI3	1381 aa		28.37	■■■□□ 2.13
PTPN18-215	ENST00000490812	STARD3NL	O95772	234 aa		28.36	■■■□□ 2.13
PTPN18-215	ENST00000490812	ZNF784	Q8NCA9	323 aa	Predicted RBP	28.36	■■■□□ 2.13
PTPN18-215	ENST00000490812	RTF1	Q92541	710 aa	Known RBP	28.36	■■■□□ 2.13
PTPN18-215	ENST00000490812	ZNF496	Q96IT1	587 aa	Predicted RBP	28.36	■■■□□ 2.13
PTPN18-215	ENST00000490812	HTATSF1	O43719	755 aa	Known RBP	28.35	■■■□□ 2.13
PTPN18-215	ENST00000490812	TEX13A	Q9BXU3	409 aa	Predicted RBP	28.35	■■■□□ 2.13
PTPN18-215	ENST00000490812	ZBTB1	Q9Y2K1	713 aa		28.35	■■■□□ 2.13
PTPN18-215	ENST00000490812	COL15A1	P39059	1388 aa		28.35	■■■□□ 2.13
PTPN18-215	ENST00000490812	KIAA1551	Q9HCM1	1747 aa		28.35	■■■□□ 2.13
PTPN18-215	ENST00000490812	ZPR1	O75312	459 aa		28.34	■■■□□ 2.13
PTPN18-215	ENST00000490812	TGFB2	P61812	414 aa		28.34	■■■□□ 2.13

Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms