RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 KDRP35968 1356 aa17.04■□□□□ 0.32
CPSF3-204ENST00000489403 ZNF831Q5JPB2 1677 aa17.04■□□□□ 0.32
CPSF3-204ENST00000489403 GNPATO15228 680 aa17.03■□□□□ 0.32
CPSF3-204ENST00000489403 COL5A3P25940 1745 aaPredicted RBP17.02■□□□□ 0.32
CPSF3-204ENST00000489403 SENP3-EIF4A1A0A087X0R7 540 aa17.02■□□□□ 0.32
CPSF3-204ENST00000489403 GIGYF1O75420 1035 aaPredicted RBP17.02■□□□□ 0.32
CPSF3-204ENST00000489403 KDM6AO15550 1401 aaPredicted RBP17.02■□□□□ 0.31
CPSF3-204ENST00000489403 SLC4A9Q96Q91 983 aa17.01■□□□□ 0.31
CPSF3-204ENST00000489403 ERVV-2B6SEH9 535 aa17■□□□□ 0.31
CPSF3-204ENST00000489403 HSP90AB1P08238 724 aaKnown RBP17■□□□□ 0.31
CPSF3-204ENST00000489403 PLEKHO1Q53GL0 409 aaPredicted RBP17■□□□□ 0.31
CPSF3-204ENST00000489403 DCAF5Q96JK2 942 aa17■□□□□ 0.31
CPSF3-204ENST00000489403 ZNF530Q6P9A1 599 aaPredicted RBP16.99■□□□□ 0.31
CPSF3-204ENST00000489403 MORC1Q86VD1 984 aa16.99■□□□□ 0.31
CPSF3-204ENST00000489403 AEBP1Q8IUX7 1158 aa16.99■□□□□ 0.31
CPSF3-204ENST00000489403 KIF13BQ9NQT8 1826 aa16.98■□□□□ 0.31
CPSF3-204ENST00000489403 ATP10DQ9P241 1426 aa16.98■□□□□ 0.31
CPSF3-204ENST00000489403 AMOTQ4VCS5 1084 aa16.98■□□□□ 0.31
CPSF3-204ENST00000489403 RBM42Q9BTD8 480 aaKnown RBP16.98■□□□□ 0.31
CPSF3-204ENST00000489403 WWC3Q9ULE0 1092 aa16.98■□□□□ 0.31
CPSF3-204ENST00000489403 ADCY9O60503 1353 aa16.98■□□□□ 0.31
CPSF3-204ENST00000489403 KIAA1551Q9HCM1 1747 aa16.97■□□□□ 0.31
CPSF3-204ENST00000489403 CCER1Q8TC90 406 aaPredicted RBP16.97■□□□□ 0.31
CPSF3-204ENST00000489403 RTCBQ9Y3I0 505 aaKnown RBP16.97■□□□□ 0.31
CPSF3-204ENST00000489403 CICQ96RK0 1608 aaPredicted RBP16.96■□□□□ 0.31
CPSF3-204ENST00000489403 C4AP0C0L4 1744 aa16.96■□□□□ 0.31
CPSF3-204ENST00000489403 MMP10P09238 476 aa16.96■□□□□ 0.31
CPSF3-204ENST00000489403 MYH14Q7Z406 1995 aaKnown RBP16.96■□□□□ 0.31
CPSF3-204ENST00000489403 CNTNAP4Q9C0A0 1308 aa16.96■□□□□ 0.3
CPSF3-204ENST00000489403 CABP4P57796 275 aa16.95■□□□□ 0.3
CPSF3-204ENST00000489403 TRAPPC3LQ5T215 181 aa16.95■□□□□ 0.3
CPSF3-204ENST00000489403 RC3H1Q5TC82 1133 aaKnown RBP16.95■□□□□ 0.3
CPSF3-204ENST00000489403 SULT6B1Q6IMI4 303 aa16.95■□□□□ 0.3
CPSF3-204ENST00000489403 KNSTRNQ9Y448 316 aa16.95■□□□□ 0.3
CPSF3-204ENST00000489403 N4BP2Q86UW6 1770 aaPredicted RBP16.94■□□□□ 0.3
CPSF3-204ENST00000489403 SCN11AQ9UI33 1791 aa16.94■□□□□ 0.3
CPSF3-204ENST00000489403 PXDNLA1KZ92 1463 aa16.94■□□□□ 0.3
CPSF3-204ENST00000489403 TJP1Q07157 1748 aa16.94■□□□□ 0.3
CPSF3-204ENST00000489403 IL13P35225 146 aa16.94■□□□□ 0.3
CPSF3-204ENST00000489403 MTHFSP49914 203 aa16.94■□□□□ 0.3
CPSF3-204ENST00000489403 C1orf141Q5JVX7 400 aa16.94■□□□□ 0.3
CPSF3-204ENST00000489403 ARHGEF1Q92888 912 aaKnown RBP16.94■□□□□ 0.3
CPSF3-204ENST00000489403 ADRA2BP18089 450 aa16.93■□□□□ 0.3
CPSF3-204ENST00000489403 AMER1Q5JTC6 1135 aaPredicted RBP16.93■□□□□ 0.3
CPSF3-204ENST00000489403 C10orf71Q711Q0 1435 aa16.93■□□□□ 0.3
CPSF3-204ENST00000489403 RPS6KA4O75676 772 aa16.92■□□□□ 0.3
CPSF3-204ENST00000489403 GYS1P13807 737 aa16.92■□□□□ 0.3
CPSF3-204ENST00000489403 NLGN1Q8N2Q7 840 aa16.92■□□□□ 0.3
CPSF3-204ENST00000489403 PTCD1O75127 700 aaKnown RBP16.91■□□□□ 0.3
CPSF3-204ENST00000489403 NFATC2IPQ8NCF5 419 aa16.91■□□□□ 0.3
CPSF3-204ENST00000489403 KIF7Q2M1P5 1343 aa16.91■□□□□ 0.3
CPSF3-204ENST00000489403 RFC4P35249 363 aa16.9■□□□□ 0.3
CPSF3-204ENST00000489403 GPBP1L1Q9HC44 474 aaPredicted RBP16.9■□□□□ 0.3
CPSF3-204ENST00000489403 VIRMAQ69YN4 1812 aaKnown RBP16.9■□□□□ 0.3
CPSF3-204ENST00000489403 BRCA1P38398 1863 aaKnown RBP16.9■□□□□ 0.3
CPSF3-204ENST00000489403 CRKLP46109 303 aaKnown RBP16.89■□□□□ 0.29
CPSF3-204ENST00000489403 TGFB2P61812 414 aa16.89■□□□□ 0.29
CPSF3-204ENST00000489403 ZNF526Q8TF50 670 aaPredicted RBP16.89■□□□□ 0.29
CPSF3-204ENST00000489403 MRC1P22897 1456 aa16.88■□□□□ 0.29
CPSF3-204ENST00000489403 AKAP4Q5JQC9 854 aa16.88■□□□□ 0.29
CPSF3-204ENST00000489403 ADAMTS7Q9UKP4 1686 aa16.88■□□□□ 0.29
CPSF3-204ENST00000489403 A0A0G2JLW4 131 aa16.87■□□□□ 0.29
CPSF3-204ENST00000489403 CCDC87Q9NVE4 849 aa16.87■□□□□ 0.29
CPSF3-204ENST00000489403 SRP68Q9UHB9 627 aaKnown RBP16.86■□□□□ 0.29
CPSF3-204ENST00000489403 BCS1LQ9Y276 419 aa16.86■□□□□ 0.29
CPSF3-204ENST00000489403 PARP3Q9Y6F1 533 aa16.86■□□□□ 0.29
CPSF3-204ENST00000489403 USP42Q9H9J4 1324 aaKnown RBP16.86■□□□□ 0.29
CPSF3-204ENST00000489403 PER1O15534 1290 aaPredicted RBP16.85■□□□□ 0.29
CPSF3-204ENST00000489403 HMOX1P09601 288 aa16.85■□□□□ 0.29
CPSF3-204ENST00000489403 SLC52A2Q9HAB3 445 aa16.85■□□□□ 0.29
CPSF3-204ENST00000489403 LGR6Q9HBX8 967 aa16.85■□□□□ 0.29
CPSF3-204ENST00000489403 DPEP1P16444 411 aa16.84■□□□□ 0.29
CPSF3-204ENST00000489403 INTS5Q6P9B9 1019 aaKnown RBP16.84■□□□□ 0.29
CPSF3-204ENST00000489403 KCPQ6ZWJ8 1503 aa16.84■□□□□ 0.29
CPSF3-204ENST00000489403 CEP350Q5VT06 3117 aa16.83■□□□□ 0.29
CPSF3-204ENST00000489403 RNMTO43148 476 aaKnown RBP16.83■□□□□ 0.28
CPSF3-204ENST00000489403 FKBP8Q14318 412 aa16.83■□□□□ 0.28
CPSF3-204ENST00000489403 DNAJC10Q8IXB1 793 aa16.83■□□□□ 0.28
CPSF3-204ENST00000489403 ARFGEF1Q9Y6D6 1849 aa16.83■□□□□ 0.28
CPSF3-204ENST00000489403 KCNA3P22001 575 aa16.82■□□□□ 0.28
CPSF3-204ENST00000489403 DDR1Q08345 913 aa16.82■□□□□ 0.28
CPSF3-204ENST00000489403 SLC39A6Q13433 755 aa16.82■□□□□ 0.28
CPSF3-204ENST00000489403 MTHFSDQ2M296 383 aaKnown RBP16.82■□□□□ 0.28
CPSF3-204ENST00000489403 CC2D1BQ5T0F9 858 aaKnown RBP16.82■□□□□ 0.28
CPSF3-204ENST00000489403 KIF3CO14782 793 aa16.81■□□□□ 0.28
CPSF3-204ENST00000489403 FCHSD2O94868 740 aa16.81■□□□□ 0.28
CPSF3-204ENST00000489403 UBR2Q8IWV8 1755 aa16.81■□□□□ 0.28
CPSF3-204ENST00000489403 COL3A1P02461 1466 aaPredicted RBP16.8■□□□□ 0.28
CPSF3-204ENST00000489403 SOS1Q07889 1333 aaPredicted RBP16.8■□□□□ 0.28
CPSF3-204ENST00000489403 DIAPH1O60610 1272 aaKnown RBP16.8■□□□□ 0.28
CPSF3-204ENST00000489403 POLRMTO00411 1230 aaKnown RBP16.79■□□□□ 0.28
CPSF3-204ENST00000489403 CYP19A1P11511 503 aaPredicted RBP16.79■□□□□ 0.28
CPSF3-204ENST00000489403 HSPA6P17066 643 aa16.79■□□□□ 0.28
CPSF3-204ENST00000489403 USPL1Q5W0Q7 1092 aa16.79■□□□□ 0.28
CPSF3-204ENST00000489403 ARHGAP27Q6ZUM4 889 aa16.79■□□□□ 0.28
CPSF3-204ENST00000489403 TM4SF1P30408 202 aa16.78■□□□□ 0.28
CPSF3-204ENST00000489403 COL15A1P39059 1388 aa16.77■□□□□ 0.28
CPSF3-204ENST00000489403 NPC1L1Q9UHC9 1359 aa16.77■□□□□ 0.28
CPSF3-204ENST00000489403 AFDNP55196 1824 aaKnown RBP16.77■□□□□ 0.28
CPSF3-204ENST00000489403 NRXN2Q9P2S2 1712 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms