RNA–Protein interactions for RNA: ENST00000488809.2

PTCH1-211, Transcript of patched 1, humanhuman

TSL 3

Gene PTCH1, Length 301 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-211ENST00000488809 ATP6V1AP38606 617 aa9.06□□□□□ -0.96
PTCH1-211ENST00000488809 NLGN1Q8N2Q7 840 aa9.06□□□□□ -0.96
PTCH1-211ENST00000488809 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.06□□□□□ -0.96
PTCH1-211ENST00000488809 BCS1LQ9Y276 419 aa9.06□□□□□ -0.96
PTCH1-211ENST00000488809 PXDNLA1KZ92 1463 aa9.06□□□□□ -0.96
PTCH1-211ENST00000488809 TNRC6CQ9HCJ0 1690 aaKnown RBP9.06□□□□□ -0.96
PTCH1-211ENST00000488809 NCAPD2Q15021 1401 aa9.05□□□□□ -0.96
PTCH1-211ENST00000488809 TRAPPC3LQ5T215 181 aa9.05□□□□□ -0.96
PTCH1-211ENST00000488809 IFNL2Q8IZJ0 200 aa9.05□□□□□ -0.96
PTCH1-211ENST00000488809 LINC00116Q8NCU8 138 aa9.05□□□□□ -0.96
PTCH1-211ENST00000488809 CCDC87Q9NVE4 849 aa9.05□□□□□ -0.96
PTCH1-211ENST00000488809 RTCBQ9Y3I0 505 aaKnown RBP9.05□□□□□ -0.96
PTCH1-211ENST00000488809 C10orf71Q711Q0 1435 aa9.05□□□□□ -0.96
PTCH1-211ENST00000488809 PPM1GO15355 546 aaPredicted RBP9.04□□□□□ -0.96
PTCH1-211ENST00000488809 ADRA2BP18089 450 aa9.04□□□□□ -0.96
PTCH1-211ENST00000488809 ARHGAP27Q6ZUM4 889 aa9.04□□□□□ -0.96
PTCH1-211ENST00000488809 AMIGO3Q86WK7 504 aa9.04□□□□□ -0.96
PTCH1-211ENST00000488809 SBF1O95248 1867 aa9.04□□□□□ -0.96
PTCH1-211ENST00000488809 FCHSD2O94868 740 aa9.03□□□□□ -0.96
PTCH1-211ENST00000488809 HSP90AB1P08238 724 aaKnown RBP9.03□□□□□ -0.96
PTCH1-211ENST00000488809 RBM46Q8TBY0 533 aaKnown RBP9.03□□□□□ -0.96
PTCH1-211ENST00000488809 PARP3Q9Y6F1 533 aa9.03□□□□□ -0.96
PTCH1-211ENST00000488809 KDM2BQ8NHM5 1336 aa9.03□□□□□ -0.96
PTCH1-211ENST00000488809 PHKG2P15735 406 aa9.02□□□□□ -0.97
PTCH1-211ENST00000488809 RFC4P35249 363 aa9.02□□□□□ -0.97
PTCH1-211ENST00000488809 ITPK1Q13572 414 aa9.02□□□□□ -0.97
PTCH1-211ENST00000488809 ASAP1Q9ULH1 1129 aa9.02□□□□□ -0.97
PTCH1-211ENST00000488809 EMILIN1Q9Y6C2 1016 aa9.02□□□□□ -0.97
PTCH1-211ENST00000488809 MYH14Q7Z406 1995 aaKnown RBP9.02□□□□□ -0.97
PTCH1-211ENST00000488809 WASHC2AQ641Q2 1341 aa9.02□□□□□ -0.97
PTCH1-211ENST00000488809 CNTNAP4Q9C0A0 1308 aa9.02□□□□□ -0.97
PTCH1-211ENST00000488809 KDRP35968 1356 aa9.01□□□□□ -0.97
PTCH1-211ENST00000488809 A0A0G2JLW4 131 aa9.01□□□□□ -0.97
PTCH1-211ENST00000488809 FSTL1Q12841 308 aa9.01□□□□□ -0.97
PTCH1-211ENST00000488809 RC3H1Q5TC82 1133 aaKnown RBP9.01□□□□□ -0.97
PTCH1-211ENST00000488809 SMIM5Q71RC9 77 aa9.01□□□□□ -0.97
PTCH1-211ENST00000488809 RBM42Q9BTD8 480 aaKnown RBP9.01□□□□□ -0.97
PTCH1-211ENST00000488809 ATG3Q9NT62 314 aa9.01□□□□□ -0.97
PTCH1-211ENST00000488809 CCDC88AQ3V6T2 1871 aa9□□□□□ -0.97
PTCH1-211ENST00000488809 ERVV-2B6SEH9 535 aa9□□□□□ -0.97
PTCH1-211ENST00000488809 DPEP1P16444 411 aa9□□□□□ -0.97
PTCH1-211ENST00000488809 DNAJC5GQ8N7S2 189 aa9□□□□□ -0.97
PTCH1-211ENST00000488809 KLRG1Q96E93 195 aa9□□□□□ -0.97
PTCH1-211ENST00000488809 EYA1Q99502 592 aa9□□□□□ -0.97
PTCH1-211ENST00000488809 NMRK2Q9NPI5 230 aa9□□□□□ -0.97
PTCH1-211ENST00000488809 PIM2Q9P1W9 311 aa9□□□□□ -0.97
PTCH1-211ENST00000488809 VIRMAQ69YN4 1812 aaKnown RBP9□□□□□ -0.97
PTCH1-211ENST00000488809 RPS6KA4O75676 772 aa8.99□□□□□ -0.97
PTCH1-211ENST00000488809 GYS1P13807 737 aa8.99□□□□□ -0.97
PTCH1-211ENST00000488809 DALRD3Q5D0E6 543 aaKnown RBP8.99□□□□□ -0.97
PTCH1-211ENST00000488809 C9orf131Q5VYM1 1079 aa8.99□□□□□ -0.97
PTCH1-211ENST00000488809 ARHGEF1Q92888 912 aaKnown RBP8.99□□□□□ -0.97
PTCH1-211ENST00000488809 DCAF5Q96JK2 942 aa8.99□□□□□ -0.97
PTCH1-211ENST00000488809 KCPQ6ZWJ8 1503 aa8.99□□□□□ -0.97
PTCH1-211ENST00000488809 PLEKHO1Q53GL0 409 aaPredicted RBP8.98□□□□□ -0.97
PTCH1-211ENST00000488809 JMYQ8N9B5 988 aa8.98□□□□□ -0.97
PTCH1-211ENST00000488809 RNF181Q9P0P0 153 aa8.98□□□□□ -0.97
PTCH1-211ENST00000488809 SCN11AQ9UI33 1791 aa8.98□□□□□ -0.97
PTCH1-211ENST00000488809 DLEC1Q9Y238 1755 aa8.98□□□□□ -0.97
PTCH1-211ENST00000488809 ZC3H4Q9UPT8 1303 aaKnown RBP8.98□□□□□ -0.97
PTCH1-211ENST00000488809 AFDNP55196 1824 aaKnown RBP8.98□□□□□ -0.97
PTCH1-211ENST00000488809 TJP1Q07157 1748 aa8.97□□□□□ -0.97
PTCH1-211ENST00000488809 TIAM2Q8IVF5 1701 aa8.97□□□□□ -0.97
PTCH1-211ENST00000488809 CABP4P57796 275 aa8.97□□□□□ -0.97
PTCH1-211ENST00000488809 AMOTQ4VCS5 1084 aa8.97□□□□□ -0.97
PTCH1-211ENST00000488809 C1orf141Q5JVX7 400 aa8.97□□□□□ -0.97
PTCH1-211ENST00000488809 SMC1BQ8NDV3 1235 aa8.97□□□□□ -0.97
PTCH1-211ENST00000488809 CARD14Q9BXL6 1004 aa8.96□□□□□ -0.98
PTCH1-211ENST00000488809 POLKQ9UBT6 870 aa8.96□□□□□ -0.98
PTCH1-211ENST00000488809 DICER1Q9UPY3 1922 aaKnown RBP8.95□□□□□ -0.98
PTCH1-211ENST00000488809 ZPR1O75312 459 aa8.95□□□□□ -0.98
PTCH1-211ENST00000488809 KCNA3P22001 575 aa8.95□□□□□ -0.98
PTCH1-211ENST00000488809 CRKLP46109 303 aaKnown RBP8.95□□□□□ -0.98
PTCH1-211ENST00000488809 EIF4A2Q14240 407 aaKnown RBP8.95□□□□□ -0.98
PTCH1-211ENST00000488809 ZNF530Q6P9A1 599 aaPredicted RBP8.95□□□□□ -0.98
PTCH1-211ENST00000488809 TNS4Q8IZW8 715 aa8.95□□□□□ -0.98
PTCH1-211ENST00000488809 RRAGCQ9HB90 399 aa8.95□□□□□ -0.98
PTCH1-211ENST00000488809 PCNTO95613 3336 aa8.95□□□□□ -0.98
PTCH1-211ENST00000488809 USP42Q9H9J4 1324 aaKnown RBP8.95□□□□□ -0.98
PTCH1-211ENST00000488809 PTCD1O75127 700 aaKnown RBP8.94□□□□□ -0.98
PTCH1-211ENST00000488809 MTHFSP49914 203 aa8.94□□□□□ -0.98
PTCH1-211ENST00000488809 COL13A1Q5TAT6 717 aaPredicted RBP8.94□□□□□ -0.98
PTCH1-211ENST00000488809 SLC4A9Q96Q91 983 aa8.94□□□□□ -0.98
PTCH1-211ENST00000488809 KDM6AO15550 1401 aaPredicted RBP8.94□□□□□ -0.98
PTCH1-211ENST00000488809 NRXN2Q9P2S2 1712 aa8.94□□□□□ -0.98
PTCH1-211ENST00000488809 CAPN15O75808 1086 aa8.93□□□□□ -0.98
PTCH1-211ENST00000488809 VEGFAP15692 232 aaPredicted RBP8.93□□□□□ -0.98
PTCH1-211ENST00000488809 TNNT2P45379 298 aaPredicted RBP8.93□□□□□ -0.98
PTCH1-211ENST00000488809 PRELPP51888 382 aa8.93□□□□□ -0.98
PTCH1-211ENST00000488809 HTRA3P83110 453 aa8.93□□□□□ -0.98
PTCH1-211ENST00000488809 ADAMTS7Q9UKP4 1686 aa8.93□□□□□ -0.98
PTCH1-211ENST00000488809 POLRMTO00411 1230 aaKnown RBP8.92□□□□□ -0.98
PTCH1-211ENST00000488809 LMNB1P20700 586 aa8.92□□□□□ -0.98
PTCH1-211ENST00000488809 FKBP8Q14318 412 aa8.92□□□□□ -0.98
PTCH1-211ENST00000488809 SRP68Q9UHB9 627 aaKnown RBP8.92□□□□□ -0.98
PTCH1-211ENST00000488809 CACNA1SQ13698 1873 aa8.91□□□□□ -0.98
PTCH1-211ENST00000488809 GLTPD2A6NH11 291 aa8.91□□□□□ -0.98
PTCH1-211ENST00000488809 CHRNA5P30532 468 aa8.91□□□□□ -0.98
PTCH1-211ENST00000488809 DDR1Q08345 913 aa8.91□□□□□ -0.98
PTCH1-211ENST00000488809 DPY19L2Q6NUT2 758 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms