RNA–Protein interactions for RNA: ENST00000487647.5

FGFR1-222, Transcript of fibroblast growth factor receptor 1, human

TSL 1 (best)

Gene FGFR1, Length 1,608 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FGFR1-222	ENST00000487647	PCDH11Y	Q9BZA8	1340 aa		18.74	■□□□□ 0.59
FGFR1-222	ENST00000487647	EIF4A1	P60842	406 aa	Known RBP	18.74	■□□□□ 0.59
FGFR1-222	ENST00000487647	CENPQ	Q7L2Z9	268 aa	Predicted RBP	18.73	■□□□□ 0.59
FGFR1-222	ENST00000487647	STK31	Q9BXU1	1019 aa		18.73	■□□□□ 0.59
FGFR1-222	ENST00000487647	TNN	Q9UQP3	1299 aa		18.73	■□□□□ 0.59
FGFR1-222	ENST00000487647	PKD1L3	Q7Z443	1732 aa		18.73	■□□□□ 0.59
FGFR1-222	ENST00000487647	CYP27B1	O15528	508 aa		18.72	■□□□□ 0.59
FGFR1-222	ENST00000487647	SLC52A2	Q9HAB3	445 aa		18.72	■□□□□ 0.59
FGFR1-222	ENST00000487647	PARP4	Q9UKK3	1724 aa	Known RBP	18.71	■□□□□ 0.59
FGFR1-222	ENST00000487647	ITPRIP	Q8IWB1	547 aa		18.71	■□□□□ 0.59
FGFR1-222	ENST00000487647	CERK	Q8TCT0	537 aa		18.71	■□□□□ 0.59
FGFR1-222	ENST00000487647	ABCC4	O15439	1325 aa		18.71	■□□□□ 0.59
FGFR1-222	ENST00000487647	SLC4A2	P04920	1241 aa		18.71	■□□□□ 0.58
FGFR1-222	ENST00000487647	NKX1-1	Q15270	411 aa	Predicted RBP	18.71	■□□□□ 0.58
FGFR1-222	ENST00000487647	TMEM57	Q8N5G2	664 aa		18.71	■□□□□ 0.58
FGFR1-222	ENST00000487647	KDM6A	O15550	1401 aa	Predicted RBP	18.7	■□□□□ 0.58
FGFR1-222	ENST00000487647	KDM2B	Q8NHM5	1336 aa		18.7	■□□□□ 0.58
FGFR1-222	ENST00000487647	TCERG1	O14776	1098 aa	Known RBP	18.69	■□□□□ 0.58
FGFR1-222	ENST00000487647	HEG1	Q9ULI3	1381 aa		18.68	■□□□□ 0.58
FGFR1-222	ENST00000487647	MRC1	P22897	1456 aa		18.68	■□□□□ 0.58
FGFR1-222	ENST00000487647	KDM3B	Q7LBC6	1761 aa		18.68	■□□□□ 0.58
FGFR1-222	ENST00000487647	JCAD	Q9P266	1359 aa		18.68	■□□□□ 0.58
FGFR1-222	ENST00000487647	ERVV-2	B6SEH9	535 aa		18.67	■□□□□ 0.58
FGFR1-222	ENST00000487647	CDCA7	Q9BWT1	371 aa	Predicted RBP	18.67	■□□□□ 0.58
FGFR1-222	ENST00000487647	HDGFL1	Q5TGJ6	251 aa		18.67	■□□□□ 0.58
FGFR1-222	ENST00000487647	CABP4	P57796	275 aa		18.66	■□□□□ 0.58
FGFR1-222	ENST00000487647	INTS3	Q68E01	1043 aa	Known RBP	18.66	■□□□□ 0.58
FGFR1-222	ENST00000487647	NFATC2IP	Q8NCF5	419 aa		18.66	■□□□□ 0.58
FGFR1-222	ENST00000487647	ZBTB40	Q9NUA8	1239 aa		18.66	■□□□□ 0.58
FGFR1-222	ENST00000487647	THRAP3	Q9Y2W1	955 aa	Known RBP	18.66	■□□□□ 0.58
FGFR1-222	ENST00000487647	GIGYF1	O75420	1035 aa	Predicted RBP	18.65	■□□□□ 0.58
FGFR1-222	ENST00000487647	ADAMTS2	O95450	1211 aa		18.65	■□□□□ 0.58
FGFR1-222	ENST00000487647	ZNF790	Q6PG37	636 aa		18.65	■□□□□ 0.58
FGFR1-222	ENST00000487647	RWDD1	Q9H446	243 aa	Predicted RBP	18.65	■□□□□ 0.58
FGFR1-222	ENST00000487647	SCN11A	Q9UI33	1791 aa		18.65	■□□□□ 0.58
FGFR1-222	ENST00000487647	KCNQ3	O43525	872 aa		18.64	■□□□□ 0.57
FGFR1-222	ENST00000487647	SIPA1L3	O60292	1781 aa	Predicted RBP	18.64	■□□□□ 0.57
FGFR1-222	ENST00000487647	ZBTB7B	O15156	539 aa	Predicted RBP	18.63	■□□□□ 0.57
FGFR1-222	ENST00000487647	DISP2	A7MBM2	1401 aa		18.63	■□□□□ 0.57
FGFR1-222	ENST00000487647	USP35	Q9P2H5	1018 aa		18.63	■□□□□ 0.57
FGFR1-222	ENST00000487647	PCDHB15	Q9Y5E8	787 aa		18.63	■□□□□ 0.57
FGFR1-222	ENST00000487647	RGS12	O14924	1447 aa		18.62	■□□□□ 0.57
FGFR1-222	ENST00000487647	NUTM2B	A6NNL0	878 aa	Predicted RBP	18.62	■□□□□ 0.57
FGFR1-222	ENST00000487647	NUTM2E	B1AL46	878 aa	Predicted RBP	18.62	■□□□□ 0.57
FGFR1-222	ENST00000487647	FLII	Q13045	1269 aa		18.62	■□□□□ 0.57
FGFR1-222	ENST00000487647	NUTM2A	Q8IVF1	878 aa	Predicted RBP	18.62	■□□□□ 0.57
FGFR1-222	ENST00000487647	TTC5	Q8N0Z6	440 aa		18.62	■□□□□ 0.57
FGFR1-222	ENST00000487647	SPATA31A6	Q5VVP1	1343 aa		18.62	■□□□□ 0.57
FGFR1-222	ENST00000487647	CCT4	P50991	539 aa	Known RBP	18.61	■□□□□ 0.57
FGFR1-222	ENST00000487647	HDAC1	Q13547	482 aa	Predicted RBP	18.61	■□□□□ 0.57
FGFR1-222	ENST00000487647	DBF4	Q9UBU7	674 aa	Predicted RBP	18.61	■□□□□ 0.57
FGFR1-222	ENST00000487647	SLIT2	O94813	1529 aa		18.6	■□□□□ 0.57
FGFR1-222	ENST00000487647	SPATA31A1	Q5TZJ5	1347 aa		18.6	■□□□□ 0.57
FGFR1-222	ENST00000487647	DDX54	Q8TDD1	881 aa	Known RBP	18.6	■□□□□ 0.57
FGFR1-222	ENST00000487647	EXOC5	O00471	708 aa		18.6	■□□□□ 0.57
FGFR1-222	ENST00000487647	IGHD	P01880	384 aa		18.6	■□□□□ 0.57
FGFR1-222	ENST00000487647	EIF2S2	P20042	333 aa	Known RBP	18.6	■□□□□ 0.57
FGFR1-222	ENST00000487647	G2E3	Q7L622	706 aa		18.6	■□□□□ 0.57
FGFR1-222	ENST00000487647	FMNL2	Q96PY5	1086 aa		18.6	■□□□□ 0.57
FGFR1-222	ENST00000487647	CACNA1F	O60840	1977 aa		18.59	■□□□□ 0.57
FGFR1-222	ENST00000487647	VIRMA	Q69YN4	1812 aa	Known RBP	18.59	■□□□□ 0.57
FGFR1-222	ENST00000487647	PLCH1	Q4KWH8	1693 aa		18.58	■□□□□ 0.56
FGFR1-222	ENST00000487647	SNRPA1	P09661	255 aa	Known RBP	18.58	■□□□□ 0.56
FGFR1-222	ENST00000487647	FKBP5	Q13451	457 aa	Predicted RBP	18.58	■□□□□ 0.56
FGFR1-222	ENST00000487647	SPATA31A5	Q5VU36	1347 aa		18.57	■□□□□ 0.56
FGFR1-222	ENST00000487647	SPATA31A7	Q8IWB4	1347 aa		18.57	■□□□□ 0.56
FGFR1-222	ENST00000487647	BARGIN	Q6ZT62	677 aa		18.57	■□□□□ 0.56
FGFR1-222	ENST00000487647	NECTIN2	Q92692	538 aa		18.57	■□□□□ 0.56
FGFR1-222	ENST00000487647	NWD2	Q9ULI1	1742 aa		18.57	■□□□□ 0.56
FGFR1-222	ENST00000487647	SLC39A6	Q13433	755 aa		18.56	■□□□□ 0.56
FGFR1-222	ENST00000487647	UNC5CL	Q8IV45	518 aa		18.56	■□□□□ 0.56
FGFR1-222	ENST00000487647	HYPK	Q9NX55	129 aa		18.56	■□□□□ 0.56
FGFR1-222	ENST00000487647	CHPF2	Q9P2E5	772 aa		18.56	■□□□□ 0.56
FGFR1-222	ENST00000487647	PXDNL	A1KZ92	1463 aa		18.56	■□□□□ 0.56
FGFR1-222	ENST00000487647	ZNF496	Q96IT1	587 aa	Predicted RBP	18.56	■□□□□ 0.56
FGFR1-222	ENST00000487647	NRAP	Q86VF7	1730 aa		18.55	■□□□□ 0.56
FGFR1-222	ENST00000487647	DDX21	Q9NR30	783 aa	Known RBP eCLIP	18.55	■□□□□ 0.56
FGFR1-222	ENST00000487647	FNBP4	Q8N3X1	1017 aa	Predicted RBP	18.54	■□□□□ 0.56
FGFR1-222	ENST00000487647	SHANK3	Q9BYB0	1731 aa		18.53	■□□□□ 0.56
FGFR1-222	ENST00000487647	TNS2	Q63HR2	1409 aa		18.53	■□□□□ 0.56
FGFR1-222	ENST00000487647	NGLY1	Q96IV0	654 aa		18.53	■□□□□ 0.56
FGFR1-222	ENST00000487647	TSHZ2	Q9NRE2	1034 aa		18.53	■□□□□ 0.56
FGFR1-222	ENST00000487647	TMOD3	Q9NYL9	352 aa		18.53	■□□□□ 0.56
FGFR1-222	ENST00000487647	VPS72	Q15906	364 aa		18.52	■□□□□ 0.56
FGFR1-222	ENST00000487647	SLC4A10	Q6U841	1118 aa		18.52	■□□□□ 0.56
FGFR1-222	ENST00000487647	PHAX	Q9H814	394 aa	Known RBP	18.52	■□□□□ 0.56
FGFR1-222	ENST00000487647	ERBB4	Q15303	1308 aa		18.52	■□□□□ 0.56
FGFR1-222	ENST00000487647		F6X3S4	739 aa		18.52	■□□□□ 0.55
FGFR1-222	ENST00000487647	DDB1	Q16531	1140 aa		18.52	■□□□□ 0.55
FGFR1-222	ENST00000487647	RPAP2	Q8IXW5	612 aa	Predicted RBP	18.52	■□□□□ 0.55
FGFR1-222	ENST00000487647	LRP6	O75581	1613 aa		18.51	■□□□□ 0.55
FGFR1-222	ENST00000487647	DDX58	O95786	925 aa	Known RBP	18.51	■□□□□ 0.55
FGFR1-222	ENST00000487647	SMC5	Q8IY18	1101 aa		18.5	■□□□□ 0.55
FGFR1-222	ENST00000487647	C8orf37	Q96NL8	207 aa		18.5	■□□□□ 0.55
FGFR1-222	ENST00000487647	PRAMEF22	A3QJZ6	481 aa		18.49	■□□□□ 0.55
FGFR1-222	ENST00000487647	GNAI3	P08754	354 aa		18.49	■□□□□ 0.55
FGFR1-222	ENST00000487647	PDIA6	Q15084	440 aa		18.49	■□□□□ 0.55
FGFR1-222	ENST00000487647	DNAAF4	Q8WXU2	420 aa		18.49	■□□□□ 0.55
FGFR1-222	ENST00000487647	GCC1	Q96CN9	775 aa		18.49	■□□□□ 0.55
FGFR1-222	ENST00000487647	CCDC9	Q9Y3X0	531 aa	Known RBP	18.49	■□□□□ 0.55

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms