RNA–Protein interactions for RNA: ENST00000487485.1

TOP3B-216, Transcript of DNA topoisomerase III beta, humanhuman

TSL 3

Gene TOP3B, Length 725 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-216ENST00000487485 U2AF1Q01081 240 aaKnown RBP eCLIP14.25□□□□□ -0.13
TOP3B-216ENST00000487485 CCDC184Q52MB2 194 aa14.25□□□□□ -0.13
TOP3B-216ENST00000487485 KDRP35968 1356 aa14.24□□□□□ -0.13
TOP3B-216ENST00000487485 HSPA6P17066 643 aa14.24□□□□□ -0.13
TOP3B-216ENST00000487485 WWC3Q9ULE0 1092 aa14.24□□□□□ -0.13
TOP3B-216ENST00000487485 SMIM5Q71RC9 77 aa14.23□□□□□ -0.13
TOP3B-216ENST00000487485 AMIGO3Q86WK7 504 aa14.23□□□□□ -0.13
TOP3B-216ENST00000487485 PKD1L3Q7Z443 1732 aa14.23□□□□□ -0.13
TOP3B-216ENST00000487485 ADCY9O60503 1353 aa14.22□□□□□ -0.13
TOP3B-216ENST00000487485 FLAD1Q8NFF5 587 aa14.22□□□□□ -0.13
TOP3B-216ENST00000487485 MRS2Q9HD23 443 aa14.22□□□□□ -0.13
TOP3B-216ENST00000487485 FCHSD2O94868 740 aa14.21□□□□□ -0.13
TOP3B-216ENST00000487485 WDR43Q15061 677 aaKnown RBP eCLIP14.21□□□□□ -0.13
TOP3B-216ENST00000487485 PLEKHO1Q53GL0 409 aaPredicted RBP14.21□□□□□ -0.13
TOP3B-216ENST00000487485 MPRIPQ6WCQ1 1025 aa14.21□□□□□ -0.13
TOP3B-216ENST00000487485 RSPH6AQ9H0K4 717 aa14.21□□□□□ -0.13
TOP3B-216ENST00000487485 SPG7Q9UQ90 795 aa14.21□□□□□ -0.13
TOP3B-216ENST00000487485 PRKAR2BP31323 418 aa14.2□□□□□ -0.14
TOP3B-216ENST00000487485 AMOTQ4VCS5 1084 aa14.2□□□□□ -0.14
TOP3B-216ENST00000487485 MIER1Q8N108 512 aa14.2□□□□□ -0.14
TOP3B-216ENST00000487485 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.2□□□□□ -0.14
TOP3B-216ENST00000487485 PALLDQ8WX93 1383 aa14.2□□□□□ -0.14
TOP3B-216ENST00000487485 PLEKHG2Q9H7P9 1386 aa14.2□□□□□ -0.14
TOP3B-216ENST00000487485 ADAMTS8Q9UP79 889 aa14.19□□□□□ -0.14
TOP3B-216ENST00000487485 PCDH11XQ9BZA7 1347 aa14.18□□□□□ -0.14
TOP3B-216ENST00000487485 PCDH11YQ9BZA8 1340 aa14.18□□□□□ -0.14
TOP3B-216ENST00000487485 KIF3CO14782 793 aa14.18□□□□□ -0.14
TOP3B-216ENST00000487485 CYP27B1O15528 508 aa14.18□□□□□ -0.14
TOP3B-216ENST00000487485 PHF14O94880 888 aa14.18□□□□□ -0.14
TOP3B-216ENST00000487485 PNNQ9H307 717 aaKnown RBP14.18□□□□□ -0.14
TOP3B-216ENST00000487485 TAF1LQ8IZX4 1826 aa14.18□□□□□ -0.14
TOP3B-216ENST00000487485 C5P01031 1676 aa14.17□□□□□ -0.14
TOP3B-216ENST00000487485 CCER2I3L3R5 266 aa14.17□□□□□ -0.14
TOP3B-216ENST00000487485 MTHFSDQ2M296 383 aaKnown RBP14.17□□□□□ -0.14
TOP3B-216ENST00000487485 PNISRQ8TF01 805 aaKnown RBP14.17□□□□□ -0.14
TOP3B-216ENST00000487485 PHACTR3Q96KR7 559 aa14.17□□□□□ -0.14
TOP3B-216ENST00000487485 AK7Q96M32 723 aa14.17□□□□□ -0.14
TOP3B-216ENST00000487485 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.16□□□□□ -0.14
TOP3B-216ENST00000487485 NEFMP07197 916 aa14.16□□□□□ -0.14
TOP3B-216ENST00000487485 HMGB2P26583 209 aaKnown RBP14.16□□□□□ -0.14
TOP3B-216ENST00000487485 ZNF530Q6P9A1 599 aaPredicted RBP14.16□□□□□ -0.14
TOP3B-216ENST00000487485 IFNL2Q8IZJ0 200 aa14.16□□□□□ -0.14
TOP3B-216ENST00000487485 PIGBQ92521 554 aa14.16□□□□□ -0.14
TOP3B-216ENST00000487485 PLEKHF1Q96S99 279 aa14.16□□□□□ -0.14
TOP3B-216ENST00000487485 VIRMAQ69YN4 1812 aaKnown RBP14.15□□□□□ -0.14
TOP3B-216ENST00000487485 PHKG2P15735 406 aa14.15□□□□□ -0.14
TOP3B-216ENST00000487485 SMARCC1Q92922 1105 aaPredicted RBP14.15□□□□□ -0.14
TOP3B-216ENST00000487485 DLG5Q8TDM6 1919 aa14.14□□□□□ -0.15
TOP3B-216ENST00000487485 C1orf141Q5JVX7 400 aa14.14□□□□□ -0.15
TOP3B-216ENST00000487485 CCDC146Q8IYE0 955 aa14.14□□□□□ -0.15
TOP3B-216ENST00000487485 GAS2L2Q8NHY3 880 aa14.14□□□□□ -0.15
TOP3B-216ENST00000487485 MAPK8IP3Q9UPT6 1336 aa14.14□□□□□ -0.15
TOP3B-216ENST00000487485 C4BP0C0L5 1744 aa14.13□□□□□ -0.15
TOP3B-216ENST00000487485 NKX1-1Q15270 411 aaPredicted RBP14.13□□□□□ -0.15
TOP3B-216ENST00000487485 AKAP4Q5JQC9 854 aa14.13□□□□□ -0.15
TOP3B-216ENST00000487485 FAM9BQ8IZU0 186 aa14.13□□□□□ -0.15
TOP3B-216ENST00000487485 LINC00116Q8NCU8 138 aa14.13□□□□□ -0.15
TOP3B-216ENST00000487485 RUNDC1Q96C34 613 aa14.13□□□□□ -0.15
TOP3B-216ENST00000487485 ITGB4P16144 1822 aa14.13□□□□□ -0.15
TOP3B-216ENST00000487485 UBR3Q6ZT12 1888 aa14.12□□□□□ -0.15
TOP3B-216ENST00000487485 LOC102724428A0A0B4J2F2 783 aa14.12□□□□□ -0.15
TOP3B-216ENST00000487485 SSFA2P28290 1259 aa14.12□□□□□ -0.15
TOP3B-216ENST00000487485 SIK1P57059 783 aa14.12□□□□□ -0.15
TOP3B-216ENST00000487485 DNAJC5GQ8N7S2 189 aa14.12□□□□□ -0.15
TOP3B-216ENST00000487485 TOGARAM1Q9Y4F4 1720 aa14.12□□□□□ -0.15
TOP3B-216ENST00000487485 SCN11AQ9UI33 1791 aa14.11□□□□□ -0.15
TOP3B-216ENST00000487485 HSP90AB1P08238 724 aaKnown RBP14.11□□□□□ -0.15
TOP3B-216ENST00000487485 GNAT3A8MTJ3 354 aa14.1□□□□□ -0.15
TOP3B-216ENST00000487485 MMP10P09238 476 aa14.1□□□□□ -0.15
TOP3B-216ENST00000487485 APLP1P51693 650 aa14.1□□□□□ -0.15
TOP3B-216ENST00000487485 ITPK1Q13572 414 aa14.1□□□□□ -0.15
TOP3B-216ENST00000487485 DCAF5Q96JK2 942 aa14.1□□□□□ -0.15
TOP3B-216ENST00000487485 ASAP1Q9ULH1 1129 aa14.1□□□□□ -0.15
TOP3B-216ENST00000487485 A0A0G2JLW4 131 aa14.09□□□□□ -0.15
TOP3B-216ENST00000487485 GNPATO15228 680 aa14.09□□□□□ -0.15
TOP3B-216ENST00000487485 NFE2L2Q16236 605 aa14.09□□□□□ -0.15
TOP3B-216ENST00000487485 LGR6Q9HBX8 967 aa14.09□□□□□ -0.15
TOP3B-216ENST00000487485 TOMM70O94826 608 aa14.08□□□□□ -0.16
TOP3B-216ENST00000487485 TMPOP42166 694 aaKnown RBP14.08□□□□□ -0.16
TOP3B-216ENST00000487485 KDM6AO15550 1401 aaPredicted RBP14.07□□□□□ -0.16
TOP3B-216ENST00000487485 ERVV-2B6SEH9 535 aa14.07□□□□□ -0.16
TOP3B-216ENST00000487485 RNMTO43148 476 aaKnown RBP14.07□□□□□ -0.16
TOP3B-216ENST00000487485 ATP6V1AP38606 617 aa14.07□□□□□ -0.16
TOP3B-216ENST00000487485 RIPK4P57078 832 aa14.07□□□□□ -0.16
TOP3B-216ENST00000487485 NEUROD2Q15784 382 aa14.07□□□□□ -0.16
TOP3B-216ENST00000487485 ARHGAP27Q6ZUM4 889 aa14.07□□□□□ -0.16
TOP3B-216ENST00000487485 NMRK2Q9NPI5 230 aa14.07□□□□□ -0.16
TOP3B-216ENST00000487485 BCS1LQ9Y276 419 aa14.07□□□□□ -0.16
TOP3B-216ENST00000487485 ADAMTS7Q9UKP4 1686 aa14.07□□□□□ -0.16
TOP3B-216ENST00000487485 APAF1O14727 1248 aa14.06□□□□□ -0.16
TOP3B-216ENST00000487485 HTATSF1O43719 755 aaKnown RBP14.06□□□□□ -0.16
TOP3B-216ENST00000487485 IL17REQ8NFR9 667 aa14.06□□□□□ -0.16
TOP3B-216ENST00000487485 RTF1Q92541 710 aaKnown RBP14.06□□□□□ -0.16
TOP3B-216ENST00000487485 ATG3Q9NT62 314 aa14.06□□□□□ -0.16
TOP3B-216ENST00000487485 TMOD3Q9NYL9 352 aa14.06□□□□□ -0.16
TOP3B-216ENST00000487485 RRP7AQ9Y3A4 280 aaKnown RBP14.06□□□□□ -0.16
TOP3B-216ENST00000487485 PXDNLA1KZ92 1463 aa14.06□□□□□ -0.16
TOP3B-216ENST00000487485 CABP4P57796 275 aa14.05□□□□□ -0.16
TOP3B-216ENST00000487485 TGFB2P61812 414 aa14.05□□□□□ -0.16
TOP3B-216ENST00000487485 MCM10Q7L590 875 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms