RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 EYA1Q99502 592 aa21.46■■□□□ 1.03
MCF2L-228ENST00000487354 WASHC2AQ641Q2 1341 aa21.46■■□□□ 1.03
MCF2L-228ENST00000487354 GNPATO15228 680 aa21.45■■□□□ 1.02
MCF2L-228ENST00000487354 ARFGEF1Q9Y6D6 1849 aa21.45■■□□□ 1.02
MCF2L-228ENST00000487354 PHKG2P15735 406 aa21.44■■□□□ 1.02
MCF2L-228ENST00000487354 SLC4A9Q96Q91 983 aa21.44■■□□□ 1.02
MCF2L-228ENST00000487354 ATG3Q9NT62 314 aa21.44■■□□□ 1.02
MCF2L-228ENST00000487354 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.44■■□□□ 1.02
MCF2L-228ENST00000487354 SPG7Q9UQ90 795 aa21.44■■□□□ 1.02
MCF2L-228ENST00000487354 TMOD3Q9NYL9 352 aa21.43■■□□□ 1.02
MCF2L-228ENST00000487354 MMP10P09238 476 aa21.42■■□□□ 1.02
MCF2L-228ENST00000487354 ATP6V1AP38606 617 aa21.41■■□□□ 1.02
MCF2L-228ENST00000487354 PLEKHG2Q9H7P9 1386 aa21.4■■□□□ 1.02
MCF2L-228ENST00000487354 PPM1GO15355 546 aaPredicted RBP21.4■■□□□ 1.02
MCF2L-228ENST00000487354 POLKQ9UBT6 870 aa21.4■■□□□ 1.02
MCF2L-228ENST00000487354 TJP1Q07157 1748 aa21.4■■□□□ 1.02
MCF2L-228ENST00000487354 WDR90Q96KV7 1748 aa21.4■■□□□ 1.02
MCF2L-228ENST00000487354 ADAMTS7Q9UKP4 1686 aa21.4■■□□□ 1.02
MCF2L-228ENST00000487354 IFNL2Q8IZJ0 200 aa21.39■■□□□ 1.01
MCF2L-228ENST00000487354 KDM6AO15550 1401 aaPredicted RBP21.38■■□□□ 1.01
MCF2L-228ENST00000487354 CDCA8Q53HL2 280 aa21.38■■□□□ 1.01
MCF2L-228ENST00000487354 EIF4A2Q14240 407 aaKnown RBP21.37■■□□□ 1.01
MCF2L-228ENST00000487354 A0A0G2JLW4 131 aa21.35■■□□□ 1.01
MCF2L-228ENST00000487354 TGFB2P61812 414 aa21.35■■□□□ 1.01
MCF2L-228ENST00000487354 SBF1O95248 1867 aa21.35■■□□□ 1.01
MCF2L-228ENST00000487354 CNTNAP4Q9C0A0 1308 aa21.34■■□□□ 1.01
MCF2L-228ENST00000487354 GYS1P13807 737 aa21.34■■□□□ 1.01
MCF2L-228ENST00000487354 DNAJC5GQ8N7S2 189 aa21.34■■□□□ 1.01
MCF2L-228ENST00000487354 ARHGEF1Q92888 912 aaKnown RBP21.34■■□□□ 1.01
MCF2L-228ENST00000487354 BCS1LQ9Y276 419 aa21.33■■□□□ 1.01
MCF2L-228ENST00000487354 RTCBQ9Y3I0 505 aaKnown RBP21.33■■□□□ 1.01
MCF2L-228ENST00000487354 DPEP1P16444 411 aa21.32■■□□□ 1
MCF2L-228ENST00000487354 KCNA3P22001 575 aa21.32■■□□□ 1
MCF2L-228ENST00000487354 TRAPPC3LQ5T215 181 aa21.32■■□□□ 1
MCF2L-228ENST00000487354 RC3H1Q5TC82 1133 aaKnown RBP21.32■■□□□ 1
MCF2L-228ENST00000487354 NMRK2Q9NPI5 230 aa21.32■■□□□ 1
MCF2L-228ENST00000487354 SCN11AQ9UI33 1791 aa21.32■■□□□ 1
MCF2L-228ENST00000487354 ADRA2BP18089 450 aa21.31■■□□□ 1
MCF2L-228ENST00000487354 NLGN1Q8N2Q7 840 aa21.31■■□□□ 1
MCF2L-228ENST00000487354 VIRMAQ69YN4 1812 aaKnown RBP21.31■■□□□ 1
MCF2L-228ENST00000487354 ERVV-2B6SEH9 535 aa21.3■■□□□ 1
MCF2L-228ENST00000487354 TOMM70O94826 608 aa21.3■■□□□ 1
MCF2L-228ENST00000487354 APLP1P51693 650 aa21.3■■□□□ 1
MCF2L-228ENST00000487354 TNRC6CQ9HCJ0 1690 aaKnown RBP21.29■■□□□ 1
MCF2L-228ENST00000487354 RPS6KA4O75676 772 aa21.29■■□□□ 1
MCF2L-228ENST00000487354 RBM42Q9BTD8 480 aaKnown RBP21.28■■□□□ 1
MCF2L-228ENST00000487354 AFDNP55196 1824 aaKnown RBP21.27■■□□□ 1
MCF2L-228ENST00000487354 ARHGAP27Q6ZUM4 889 aa21.27■■□□□ 1
MCF2L-228ENST00000487354 DCAF5Q96JK2 942 aa21.27■■□□□ 1
MCF2L-228ENST00000487354 CCDC87Q9NVE4 849 aa21.27■■□□□ 1
MCF2L-228ENST00000487354 DLEC1Q9Y238 1755 aa21.27■■□□□ 1
MCF2L-228ENST00000487354 KCPQ6ZWJ8 1503 aa21.26■□□□□ 0.99
MCF2L-228ENST00000487354 TNNT2P45379 298 aaPredicted RBP21.26■□□□□ 0.99
MCF2L-228ENST00000487354 FCHSD2O94868 740 aa21.25■□□□□ 0.99
MCF2L-228ENST00000487354 DDR1Q08345 913 aa21.25■□□□□ 0.99
MCF2L-228ENST00000487354 NRXN2Q9P2S2 1712 aa21.25■□□□□ 0.99
MCF2L-228ENST00000487354 RFC4P35249 363 aa21.24■□□□□ 0.99
MCF2L-228ENST00000487354 C9orf131Q5VYM1 1079 aa21.24■□□□□ 0.99
MCF2L-228ENST00000487354 SRP68Q9UHB9 627 aaKnown RBP21.24■□□□□ 0.99
MCF2L-228ENST00000487354 HSP90AB1P08238 724 aaKnown RBP21.23■□□□□ 0.99
MCF2L-228ENST00000487354 AEBP1Q8IUX7 1158 aa21.23■□□□□ 0.99
MCF2L-228ENST00000487354 PARP3Q9Y6F1 533 aa21.23■□□□□ 0.99
MCF2L-228ENST00000487354 PCNTO95613 3336 aa21.23■□□□□ 0.99
MCF2L-228ENST00000487354 USP42Q9H9J4 1324 aaKnown RBP21.23■□□□□ 0.99
MCF2L-228ENST00000487354 CRKLP46109 303 aaKnown RBP21.22■□□□□ 0.99
MCF2L-228ENST00000487354 FKBP8Q14318 412 aa21.22■□□□□ 0.99
MCF2L-228ENST00000487354 ZNF530Q6P9A1 599 aaPredicted RBP21.22■□□□□ 0.99
MCF2L-228ENST00000487354 RBM46Q8TBY0 533 aaKnown RBP21.22■□□□□ 0.99
MCF2L-228ENST00000487354 HTRA3P83110 453 aa21.21■□□□□ 0.99
MCF2L-228ENST00000487354 MRC1P22897 1456 aa21.2■□□□□ 0.98
MCF2L-228ENST00000487354 CABP4P57796 275 aa21.2■□□□□ 0.98
MCF2L-228ENST00000487354 PLEKHO1Q53GL0 409 aaPredicted RBP21.2■□□□□ 0.98
MCF2L-228ENST00000487354 TIAM2Q8IVF5 1701 aa21.2■□□□□ 0.98
MCF2L-228ENST00000487354 CCDC88AQ3V6T2 1871 aa21.2■□□□□ 0.98
MCF2L-228ENST00000487354 PTCD1O75127 700 aaKnown RBP21.19■□□□□ 0.98
MCF2L-228ENST00000487354 CHRNA5P30532 468 aa21.18■□□□□ 0.98
MCF2L-228ENST00000487354 AMOTQ4VCS5 1084 aa21.18■□□□□ 0.98
MCF2L-228ENST00000487354 INTS5Q6P9B9 1019 aaKnown RBP21.18■□□□□ 0.98
MCF2L-228ENST00000487354 PIM2Q9P1W9 311 aa21.18■□□□□ 0.98
MCF2L-228ENST00000487354 UBR2Q8IWV8 1755 aa21.18■□□□□ 0.98
MCF2L-228ENST00000487354 POLRMTO00411 1230 aaKnown RBP21.17■□□□□ 0.98
MCF2L-228ENST00000487354 NFATC2IPQ8NCF5 419 aa21.17■□□□□ 0.98
MCF2L-228ENST00000487354 TM4SF1P30408 202 aa21.16■□□□□ 0.98
MCF2L-228ENST00000487354 MTHFSP49914 203 aa21.16■□□□□ 0.98
MCF2L-228ENST00000487354 DALRD3Q5D0E6 543 aaKnown RBP21.16■□□□□ 0.98
MCF2L-228ENST00000487354 JMYQ8N9B5 988 aa21.16■□□□□ 0.98
MCF2L-228ENST00000487354 KLRG1Q96E93 195 aa21.16■□□□□ 0.98
MCF2L-228ENST00000487354 RNF181Q9P0P0 153 aa21.15■□□□□ 0.98
MCF2L-228ENST00000487354 ANKRD31Q8N7Z5 1873 aa21.14■□□□□ 0.97
MCF2L-228ENST00000487354 PRELPP51888 382 aa21.14■□□□□ 0.97
MCF2L-228ENST00000487354 FSTL1Q12841 308 aa21.14■□□□□ 0.97
MCF2L-228ENST00000487354 SOS1Q07889 1333 aaPredicted RBP21.13■□□□□ 0.97
MCF2L-228ENST00000487354 POLR3GLQ9BT43 218 aa21.13■□□□□ 0.97
MCF2L-228ENST00000487354 PANK3Q9H999 370 aa21.13■□□□□ 0.97
MCF2L-228ENST00000487354 KDM2BQ8NHM5 1336 aa21.11■□□□□ 0.97
MCF2L-228ENST00000487354 RASSF7Q02833 373 aa21.11■□□□□ 0.97
MCF2L-228ENST00000487354 C1orf141Q5JVX7 400 aa21.11■□□□□ 0.97
MCF2L-228ENST00000487354 SULT6B1Q6IMI4 303 aa21.11■□□□□ 0.97
MCF2L-228ENST00000487354 DNAJC10Q8IXB1 793 aa21.11■□□□□ 0.97
MCF2L-228ENST00000487354 RRAGCQ9HB90 399 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms