RNA–Protein interactions for RNA: ENST00000486935.2

SEMA4D-219, Transcript of semaphorin 4D, humanhuman

TSL 2

Gene SEMA4D, Length 969 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-219ENST00000486935 AMIGO3Q86WK7 504 aa20.79■□□□□ 0.92
SEMA4D-219ENST00000486935 MAP3K5Q99683 1374 aa20.78■□□□□ 0.92
SEMA4D-219ENST00000486935 ANP32CO43423 234 aa20.78■□□□□ 0.92
SEMA4D-219ENST00000486935 ITPK1Q13572 414 aa20.78■□□□□ 0.92
SEMA4D-219ENST00000486935 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.77■□□□□ 0.92
SEMA4D-219ENST00000486935 GPR162Q16538 588 aa20.77■□□□□ 0.92
SEMA4D-219ENST00000486935 RBM42Q9BTD8 480 aaKnown RBP20.77■□□□□ 0.92
SEMA4D-219ENST00000486935 QSER1Q2KHR3 1735 aa20.77■□□□□ 0.92
SEMA4D-219ENST00000486935 ITGB4P16144 1822 aa20.76■□□□□ 0.91
SEMA4D-219ENST00000486935 NPC1L1Q9UHC9 1359 aa20.75■□□□□ 0.91
SEMA4D-219ENST00000486935 HMOX1P09601 288 aa20.75■□□□□ 0.91
SEMA4D-219ENST00000486935 C5P01031 1676 aa20.74■□□□□ 0.91
SEMA4D-219ENST00000486935 TUBGCP6Q96RT7 1819 aa20.74■□□□□ 0.91
SEMA4D-219ENST00000486935 GNPATO15228 680 aa20.74■□□□□ 0.91
SEMA4D-219ENST00000486935 DIAPH1O60610 1272 aaKnown RBP20.74■□□□□ 0.91
SEMA4D-219ENST00000486935 PELP1Q8IZL8 1130 aaKnown RBP20.74■□□□□ 0.91
SEMA4D-219ENST00000486935 NFATC2IPQ8NCF5 419 aa20.74■□□□□ 0.91
SEMA4D-219ENST00000486935 NLGN2Q8NFZ4 835 aa20.74■□□□□ 0.91
SEMA4D-219ENST00000486935 KDRP35968 1356 aa20.73■□□□□ 0.91
SEMA4D-219ENST00000486935 KDM6AO15550 1401 aaPredicted RBP20.73■□□□□ 0.91
SEMA4D-219ENST00000486935 SSFA2P28290 1259 aa20.73■□□□□ 0.91
SEMA4D-219ENST00000486935 SLC4A9Q96Q91 983 aa20.73■□□□□ 0.91
SEMA4D-219ENST00000486935 C4BP0C0L5 1744 aa20.72■□□□□ 0.91
SEMA4D-219ENST00000486935 AKAP4Q5JQC9 854 aa20.71■□□□□ 0.91
SEMA4D-219ENST00000486935 PRKRIP1Q9H875 184 aaPredicted RBP20.71■□□□□ 0.91
SEMA4D-219ENST00000486935 PTCD1O75127 700 aaKnown RBP20.7■□□□□ 0.9
SEMA4D-219ENST00000486935 MIER1Q8N108 512 aa20.7■□□□□ 0.9
SEMA4D-219ENST00000486935 LGR6Q9HBX8 967 aa20.69■□□□□ 0.9
SEMA4D-219ENST00000486935 RALBP1Q15311 655 aa20.68■□□□□ 0.9
SEMA4D-219ENST00000486935 TRAPPC3LQ5T215 181 aa20.68■□□□□ 0.9
SEMA4D-219ENST00000486935 RTCBQ9Y3I0 505 aaKnown RBP20.68■□□□□ 0.9
SEMA4D-219ENST00000486935 TAF1LQ8IZX4 1826 aa20.68■□□□□ 0.9
SEMA4D-219ENST00000486935 COL24A1Q17RW2 1714 aa20.67■□□□□ 0.9
SEMA4D-219ENST00000486935 U2SURPO15042 1029 aaKnown RBP20.67■□□□□ 0.9
SEMA4D-219ENST00000486935 MTHFSDQ2M296 383 aaKnown RBP20.67■□□□□ 0.9
SEMA4D-219ENST00000486935 CD2APQ9Y5K6 639 aa20.67■□□□□ 0.9
SEMA4D-219ENST00000486935 RC3H1Q5TC82 1133 aaKnown RBP20.66■□□□□ 0.9
SEMA4D-219ENST00000486935 UTRNP46939 3433 aa20.64■□□□□ 0.89
SEMA4D-219ENST00000486935 RNMTO43148 476 aaKnown RBP20.64■□□□□ 0.89
SEMA4D-219ENST00000486935 ARHGEF1Q92888 912 aaKnown RBP20.64■□□□□ 0.89
SEMA4D-219ENST00000486935 SLC52A2Q9HAB3 445 aa20.64■□□□□ 0.89
SEMA4D-219ENST00000486935 MYBBP1AQ9BQG0 1328 aaKnown RBP20.63■□□□□ 0.89
SEMA4D-219ENST00000486935 CNTNAP4Q9C0A0 1308 aa20.63■□□□□ 0.89
SEMA4D-219ENST00000486935 RPS6KA4O75676 772 aa20.63■□□□□ 0.89
SEMA4D-219ENST00000486935 YBX3P16989 372 aaKnown RBP eCLIP20.62■□□□□ 0.89
SEMA4D-219ENST00000486935 RFC4P35249 363 aa20.62■□□□□ 0.89
SEMA4D-219ENST00000486935 ZNF784Q8NCA9 323 aaPredicted RBP20.62■□□□□ 0.89
SEMA4D-219ENST00000486935 MMP10P09238 476 aa20.61■□□□□ 0.89
SEMA4D-219ENST00000486935 ADRA2BP18089 450 aa20.61■□□□□ 0.89
SEMA4D-219ENST00000486935 CFAP53Q96M91 514 aa20.61■□□□□ 0.89
SEMA4D-219ENST00000486935 UBR3Q6ZT12 1888 aa20.6■□□□□ 0.89
SEMA4D-219ENST00000486935 GRIN3BO60391 1043 aa20.6■□□□□ 0.89
SEMA4D-219ENST00000486935 PPP2R1AP30153 589 aa20.6■□□□□ 0.89
SEMA4D-219ENST00000486935 CRKLP46109 303 aaKnown RBP20.6■□□□□ 0.89
SEMA4D-219ENST00000486935 SLC39A6Q13433 755 aa20.6■□□□□ 0.89
SEMA4D-219ENST00000486935 NLGN1Q8N2Q7 840 aa20.6■□□□□ 0.89
SEMA4D-219ENST00000486935 COL3A1P02461 1466 aaPredicted RBP20.57■□□□□ 0.88
SEMA4D-219ENST00000486935 GOLGB1Q14789 3259 aaKnown RBP20.57■□□□□ 0.88
SEMA4D-219ENST00000486935 DNAJC10Q8IXB1 793 aa20.57■□□□□ 0.88
SEMA4D-219ENST00000486935 WWC3Q9ULE0 1092 aa20.57■□□□□ 0.88
SEMA4D-219ENST00000486935 GYS1P13807 737 aa20.56■□□□□ 0.88
SEMA4D-219ENST00000486935 INTS5Q6P9B9 1019 aaKnown RBP20.56■□□□□ 0.88
SEMA4D-219ENST00000486935 GAS2L2Q8NHY3 880 aa20.56■□□□□ 0.88
SEMA4D-219ENST00000486935 GNAT3A8MTJ3 354 aa20.55■□□□□ 0.88
SEMA4D-219ENST00000486935 NUDCQ9Y266 331 aa20.55■□□□□ 0.88
SEMA4D-219ENST00000486935 IL17REQ8NFR9 667 aa20.54■□□□□ 0.88
SEMA4D-219ENST00000486935 PHACTR3Q96KR7 559 aa20.54■□□□□ 0.88
SEMA4D-219ENST00000486935 SRP68Q9UHB9 627 aaKnown RBP20.54■□□□□ 0.88
SEMA4D-219ENST00000486935 ZNF831Q5JPB2 1677 aa20.54■□□□□ 0.88
SEMA4D-219ENST00000486935 CCER2I3L3R5 266 aa20.53■□□□□ 0.88
SEMA4D-219ENST00000486935 U2AF1L5P0DN76 240 aaPredicted RBP20.53■□□□□ 0.88
SEMA4D-219ENST00000486935 PRKAR2BP31323 418 aa20.53■□□□□ 0.88
SEMA4D-219ENST00000486935 U2AF1Q01081 240 aaKnown RBP eCLIP20.53■□□□□ 0.88
SEMA4D-219ENST00000486935 CCDC87Q9NVE4 849 aa20.53■□□□□ 0.88
SEMA4D-219ENST00000486935 PARP3Q9Y6F1 533 aa20.53■□□□□ 0.88
SEMA4D-219ENST00000486935 CYP19A1P11511 503 aaPredicted RBP20.52■□□□□ 0.88
SEMA4D-219ENST00000486935 TEFQ10587 303 aa20.52■□□□□ 0.88
SEMA4D-219ENST00000486935 CCDC184Q52MB2 194 aa20.52■□□□□ 0.88
SEMA4D-219ENST00000486935 RSPH6AQ9H0K4 717 aa20.52■□□□□ 0.88
SEMA4D-219ENST00000486935 SCN11AQ9UI33 1791 aa20.51■□□□□ 0.87
SEMA4D-219ENST00000486935 TTC5Q8N0Z6 440 aa20.51■□□□□ 0.87
SEMA4D-219ENST00000486935 MRS2Q9HD23 443 aa20.51■□□□□ 0.87
SEMA4D-219ENST00000486935 FKBP8Q14318 412 aa20.5■□□□□ 0.87
SEMA4D-219ENST00000486935 VSIG10Q8N0Z9 540 aa20.5■□□□□ 0.87
SEMA4D-219ENST00000486935 USP42Q9H9J4 1324 aaKnown RBP20.5■□□□□ 0.87
SEMA4D-219ENST00000486935 MRC1P22897 1456 aa20.5■□□□□ 0.87
SEMA4D-219ENST00000486935 A0A0G2JLW4 131 aa20.49■□□□□ 0.87
SEMA4D-219ENST00000486935 ZPR1O75312 459 aa20.49■□□□□ 0.87
SEMA4D-219ENST00000486935 COL5A3P25940 1745 aaPredicted RBP20.49■□□□□ 0.87
SEMA4D-219ENST00000486935 TGFB2P61812 414 aa20.48■□□□□ 0.87
SEMA4D-219ENST00000486935 FCHSD2O94868 740 aa20.47■□□□□ 0.87
SEMA4D-219ENST00000486935 USPL1Q5W0Q7 1092 aa20.47■□□□□ 0.87
SEMA4D-219ENST00000486935 ZNF790Q6PG37 636 aa20.47■□□□□ 0.87
SEMA4D-219ENST00000486935 ZBTB1Q9Y2K1 713 aa20.47■□□□□ 0.87
SEMA4D-219ENST00000486935 SOS1Q07889 1333 aaPredicted RBP20.47■□□□□ 0.87
SEMA4D-219ENST00000486935 STARD3NLO95772 234 aa20.46■□□□□ 0.87
SEMA4D-219ENST00000486935 CANXP27824 592 aaKnown RBP20.46■□□□□ 0.87
SEMA4D-219ENST00000486935 ZNF496Q96IT1 587 aaPredicted RBP20.46■□□□□ 0.87
SEMA4D-219ENST00000486935 KCPQ6ZWJ8 1503 aa20.46■□□□□ 0.87
SEMA4D-219ENST00000486935 CICQ96RK0 1608 aaPredicted RBP20.45■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms