RNA–Protein interactions for RNA: ENST00000485397.1

COL27A1-205, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 5

Gene COL27A1, Length 463 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-205ENST00000485397 PLEKHO1Q53GL0 409 aaPredicted RBP26.35■■□□□ 1.81
COL27A1-205ENST00000485397 GNPATO15228 680 aa26.34■■□□□ 1.81
COL27A1-205ENST00000485397 AEBP1Q8IUX7 1158 aa26.34■■□□□ 1.81
COL27A1-205ENST00000485397 ERVV-2B6SEH9 535 aa26.33■■□□□ 1.81
COL27A1-205ENST00000485397 ZNF530Q6P9A1 599 aaPredicted RBP26.33■■□□□ 1.81
COL27A1-205ENST00000485397 KNSTRNQ9Y448 316 aa26.33■■□□□ 1.81
COL27A1-205ENST00000485397 HSP90AB1P08238 724 aaKnown RBP26.32■■□□□ 1.8
COL27A1-205ENST00000485397 DCAF5Q96JK2 942 aa26.32■■□□□ 1.8
COL27A1-205ENST00000485397 SLC4A9Q96Q91 983 aa26.32■■□□□ 1.8
COL27A1-205ENST00000485397 AMOTQ4VCS5 1084 aa26.3■■□□□ 1.8
COL27A1-205ENST00000485397 RBM42Q9BTD8 480 aaKnown RBP26.3■■□□□ 1.8
COL27A1-205ENST00000485397 KDRP35968 1356 aa26.3■■□□□ 1.8
COL27A1-205ENST00000485397 KDM6AO15550 1401 aaPredicted RBP26.3■■□□□ 1.8
COL27A1-205ENST00000485397 SULT6B1Q6IMI4 303 aa26.28■■□□□ 1.8
COL27A1-205ENST00000485397 CABP4P57796 275 aa26.27■■□□□ 1.8
COL27A1-205ENST00000485397 C1QTNF8P60827 252 aa26.27■■□□□ 1.8
COL27A1-205ENST00000485397 IL13P35225 146 aa26.26■■□□□ 1.79
COL27A1-205ENST00000485397 MTHFSP49914 203 aa26.26■■□□□ 1.79
COL27A1-205ENST00000485397 AMER1Q5JTC6 1135 aaPredicted RBP26.26■■□□□ 1.79
COL27A1-205ENST00000485397 WWC3Q9ULE0 1092 aa26.26■■□□□ 1.79
COL27A1-205ENST00000485397 KIF7Q2M1P5 1343 aa26.25■■□□□ 1.79
COL27A1-205ENST00000485397 RTCBQ9Y3I0 505 aaKnown RBP26.25■■□□□ 1.79
COL27A1-205ENST00000485397 C1orf141Q5JVX7 400 aa26.24■■□□□ 1.79
COL27A1-205ENST00000485397 TRAPPC3LQ5T215 181 aa26.23■■□□□ 1.79
COL27A1-205ENST00000485397 MMP10P09238 476 aa26.22■■□□□ 1.79
COL27A1-205ENST00000485397 RC3H1Q5TC82 1133 aaKnown RBP26.22■■□□□ 1.79
COL27A1-205ENST00000485397 GOLGB1Q14789 3259 aaKnown RBP26.22■■□□□ 1.79
COL27A1-205ENST00000485397 GIGYF1O75420 1035 aaPredicted RBP26.21■■□□□ 1.79
COL27A1-205ENST00000485397 NFATC2IPQ8NCF5 419 aa26.21■■□□□ 1.79
COL27A1-205ENST00000485397 ARHGEF1Q92888 912 aaKnown RBP26.21■■□□□ 1.79
COL27A1-205ENST00000485397 PTCD1O75127 700 aaKnown RBP26.2■■□□□ 1.78
COL27A1-205ENST00000485397 CNTNAP4Q9C0A0 1308 aa26.19■■□□□ 1.78
COL27A1-205ENST00000485397 SENP3-EIF4A1A0A087X0R7 540 aa26.19■■□□□ 1.78
COL27A1-205ENST00000485397 RPS6KA4O75676 772 aa26.18■■□□□ 1.78
COL27A1-205ENST00000485397 ZNF831Q5JPB2 1677 aa26.18■■□□□ 1.78
COL27A1-205ENST00000485397 NLGN1Q8N2Q7 840 aa26.17■■□□□ 1.78
COL27A1-205ENST00000485397 ATP10DQ9P241 1426 aa26.16■■□□□ 1.78
COL27A1-205ENST00000485397 PER1O15534 1290 aaPredicted RBP26.16■■□□□ 1.78
COL27A1-205ENST00000485397 ADRA2BP18089 450 aa26.16■■□□□ 1.78
COL27A1-205ENST00000485397 COL5A3P25940 1745 aaPredicted RBP26.16■■□□□ 1.78
COL27A1-205ENST00000485397 RFC4P35249 363 aa26.15■■□□□ 1.78
COL27A1-205ENST00000485397 HMOX1P09601 288 aa26.14■■□□□ 1.78
COL27A1-205ENST00000485397 GYS1P13807 737 aa26.14■■□□□ 1.78
COL27A1-205ENST00000485397 AKAP4Q5JQC9 854 aa26.14■■□□□ 1.78
COL27A1-205ENST00000485397 CC2D1BQ5T0F9 858 aaKnown RBP26.14■■□□□ 1.78
COL27A1-205ENST00000485397 MYH14Q7Z406 1995 aaKnown RBP26.13■■□□□ 1.77
COL27A1-205ENST00000485397 CRKLP46109 303 aaKnown RBP26.12■■□□□ 1.77
COL27A1-205ENST00000485397 LGR6Q9HBX8 967 aa26.12■■□□□ 1.77
COL27A1-205ENST00000485397 CICQ96RK0 1608 aaPredicted RBP26.12■■□□□ 1.77
COL27A1-205ENST00000485397 PXDNLA1KZ92 1463 aa26.1■■□□□ 1.77
COL27A1-205ENST00000485397 ADCY9O60503 1353 aa26.09■■□□□ 1.77
COL27A1-205ENST00000485397 A0A0G2JLW4 131 aa26.09■■□□□ 1.77
COL27A1-205ENST00000485397 TGFB2P61812 414 aa26.09■■□□□ 1.77
COL27A1-205ENST00000485397 SLC52A2Q9HAB3 445 aa26.09■■□□□ 1.77
COL27A1-205ENST00000485397 SRP68Q9UHB9 627 aaKnown RBP26.09■■□□□ 1.77
COL27A1-205ENST00000485397 SCN11AQ9UI33 1791 aa26.09■■□□□ 1.77
COL27A1-205ENST00000485397 C10orf71Q711Q0 1435 aa26.08■■□□□ 1.77
COL27A1-205ENST00000485397 RNMTO43148 476 aaKnown RBP26.08■■□□□ 1.77
COL27A1-205ENST00000485397 DIAPH1O60610 1272 aaKnown RBP26.08■■□□□ 1.77
COL27A1-205ENST00000485397 ZNF526Q8TF50 670 aaPredicted RBP26.08■■□□□ 1.77
COL27A1-205ENST00000485397 CCDC87Q9NVE4 849 aa26.08■■□□□ 1.77
COL27A1-205ENST00000485397 PARP3Q9Y6F1 533 aa26.08■■□□□ 1.77
COL27A1-205ENST00000485397 CNGB1Q14028 1251 aaPredicted RBP26.07■■□□□ 1.76
COL27A1-205ENST00000485397 MTHFSDQ2M296 383 aaKnown RBP26.07■■□□□ 1.76
COL27A1-205ENST00000485397 DNAJC10Q8IXB1 793 aa26.07■■□□□ 1.76
COL27A1-205ENST00000485397 GPBP1L1Q9HC44 474 aaPredicted RBP26.07■■□□□ 1.76
COL27A1-205ENST00000485397 TJP1Q07157 1748 aa26.06■■□□□ 1.76
COL27A1-205ENST00000485397 SLC39A6Q13433 755 aa26.06■■□□□ 1.76
COL27A1-205ENST00000485397 INTS5Q6P9B9 1019 aaKnown RBP26.06■■□□□ 1.76
COL27A1-205ENST00000485397 KIF13BQ9NQT8 1826 aa26.06■■□□□ 1.76
COL27A1-205ENST00000485397 KIAA1551Q9HCM1 1747 aa26.05■■□□□ 1.76
COL27A1-205ENST00000485397 DPEP1P16444 411 aa26.05■■□□□ 1.76
COL27A1-205ENST00000485397 BCS1LQ9Y276 419 aa26.05■■□□□ 1.76
COL27A1-205ENST00000485397 C4AP0C0L4 1744 aa26.05■■□□□ 1.76
COL27A1-205ENST00000485397 FKBP8Q14318 412 aa26.04■■□□□ 1.76
COL27A1-205ENST00000485397 USP42Q9H9J4 1324 aaKnown RBP26.04■■□□□ 1.76
COL27A1-205ENST00000485397 N4BP2Q86UW6 1770 aaPredicted RBP26.04■■□□□ 1.76
COL27A1-205ENST00000485397 MRC1P22897 1456 aa26.01■■□□□ 1.75
COL27A1-205ENST00000485397 DDR1Q08345 913 aa26.01■■□□□ 1.75
COL27A1-205ENST00000485397 FCHSD2O94868 740 aa25.99■■□□□ 1.75
COL27A1-205ENST00000485397 CYP19A1P11511 503 aaPredicted RBP25.99■■□□□ 1.75
COL27A1-205ENST00000485397 NPC1L1Q9UHC9 1359 aa25.98■■□□□ 1.75
COL27A1-205ENST00000485397 SOS1Q07889 1333 aaPredicted RBP25.98■■□□□ 1.75
COL27A1-205ENST00000485397 U2SURPO15042 1029 aaKnown RBP25.98■■□□□ 1.75
COL27A1-205ENST00000485397 KCNA3P22001 575 aa25.98■■□□□ 1.75
COL27A1-205ENST00000485397 COL3A1P02461 1466 aaPredicted RBP25.98■■□□□ 1.75
COL27A1-205ENST00000485397 USPL1Q5W0Q7 1092 aa25.97■■□□□ 1.75
COL27A1-205ENST00000485397 ARHGAP27Q6ZUM4 889 aa25.97■■□□□ 1.75
COL27A1-205ENST00000485397 KCPQ6ZWJ8 1503 aa25.97■■□□□ 1.75
COL27A1-205ENST00000485397 ADAMTS7Q9UKP4 1686 aa25.96■■□□□ 1.75
COL27A1-205ENST00000485397 ZPR1O75312 459 aa25.95■■□□□ 1.74
COL27A1-205ENST00000485397 TM4SF1P30408 202 aa25.95■■□□□ 1.74
COL27A1-205ENST00000485397 ZBTB1Q9Y2K1 713 aa25.95■■□□□ 1.74
COL27A1-205ENST00000485397 VIRMAQ69YN4 1812 aaKnown RBP25.94■■□□□ 1.74
COL27A1-205ENST00000485397 POLRMTO00411 1230 aaKnown RBP25.94■■□□□ 1.74
COL27A1-205ENST00000485397 PIM2Q9P1W9 311 aa25.93■■□□□ 1.74
COL27A1-205ENST00000485397 VSIG10Q8N0Z9 540 aa25.92■■□□□ 1.74
COL27A1-205ENST00000485397 KIF3CO14782 793 aa25.91■■□□□ 1.74
COL27A1-205ENST00000485397 CHRNA5P30532 468 aa25.91■■□□□ 1.74
COL27A1-205ENST00000485397 IL17REQ8NFR9 667 aa25.91■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms