RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 NOD1Q9Y239 953 aa7.66□□□□□ -1.18
VPS50-217ENST00000485140 HRH3Q9Y5N1 445 aa7.66□□□□□ -1.18
VPS50-217ENST00000485140 RHOQP17081 205 aa7.65□□□□□ -1.18
VPS50-217ENST00000485140 TLR1Q15399 786 aa7.65□□□□□ -1.18
VPS50-217ENST00000485140 EFHC2Q5JST6 749 aa7.65□□□□□ -1.18
VPS50-217ENST00000485140 PPARGC1BQ86YN6 1023 aaKnown RBP7.65□□□□□ -1.18
VPS50-217ENST00000485140 CDCA7Q9BWT1 371 aaPredicted RBP7.65□□□□□ -1.18
VPS50-217ENST00000485140 ALG2Q9H553 416 aa7.65□□□□□ -1.18
VPS50-217ENST00000485140 MBIPQ9NS73 344 aa7.65□□□□□ -1.18
VPS50-217ENST00000485140 INHAP05111 366 aa7.64□□□□□ -1.19
VPS50-217ENST00000485140 ZNF837Q96EG3 531 aaPredicted RBP7.64□□□□□ -1.19
VPS50-217ENST00000485140 GAS2L1Q99501 681 aaPredicted RBP7.64□□□□□ -1.19
VPS50-217ENST00000485140 CFHR5Q9BXR6 569 aa7.64□□□□□ -1.19
VPS50-217ENST00000485140 NIFKQ9BYG3 293 aaKnown RBP7.64□□□□□ -1.19
VPS50-217ENST00000485140 FHDC1Q9C0D6 1143 aaPredicted RBP7.64□□□□□ -1.19
VPS50-217ENST00000485140 NUCKS1Q9H1E3 243 aaKnown RBP7.64□□□□□ -1.19
VPS50-217ENST00000485140 MAP2K3P46734 347 aa7.63□□□□□ -1.19
VPS50-217ENST00000485140 ATP1A2P50993 1020 aa7.63□□□□□ -1.19
VPS50-217ENST00000485140 GDF10P55107 478 aa7.63□□□□□ -1.19
VPS50-217ENST00000485140 FIGNL1Q6PIW4 674 aa7.63□□□□□ -1.19
VPS50-217ENST00000485140 RAB6BQ9NRW1 208 aa7.63□□□□□ -1.19
VPS50-217ENST00000485140 NBPF1Q3BBV0 1214 aa7.62□□□□□ -1.19
VPS50-217ENST00000485140 TBC1D9Q6ZT07 1266 aa7.62□□□□□ -1.19
VPS50-217ENST00000485140 SVOPQ8N4V2 548 aa7.62□□□□□ -1.19
VPS50-217ENST00000485140 GPR161Q8N6U8 529 aaKnown RBP7.62□□□□□ -1.19
VPS50-217ENST00000485140 ETNK1Q9HBU6 452 aa7.62□□□□□ -1.19
VPS50-217ENST00000485140 SKIP12755 728 aa7.61□□□□□ -1.19
VPS50-217ENST00000485140 SMTNP53814 917 aa7.61□□□□□ -1.19
VPS50-217ENST00000485140 PLEKHM2Q8IWE5 1019 aa7.61□□□□□ -1.19
VPS50-217ENST00000485140 SLC4A9Q96Q91 983 aa7.61□□□□□ -1.19
VPS50-217ENST00000485140 RBM19Q9Y4C8 960 aaKnown RBP7.61□□□□□ -1.19
VPS50-217ENST00000485140 GPC6Q9Y625 555 aaPredicted RBP7.61□□□□□ -1.19
VPS50-217ENST00000485140 CDK2AP1O14519 115 aa7.6□□□□□ -1.19
VPS50-217ENST00000485140 ADAMTS2O95450 1211 aa7.6□□□□□ -1.19
VPS50-217ENST00000485140 KRT76Q01546 638 aa7.6□□□□□ -1.19
VPS50-217ENST00000485140 SCARF2Q96GP6 870 aaPredicted RBP7.6□□□□□ -1.19
VPS50-217ENST00000485140 CRISPLD1Q9H336 500 aa7.6□□□□□ -1.19
VPS50-217ENST00000485140 TATP17735 454 aaPredicted RBP7.59□□□□□ -1.19
VPS50-217ENST00000485140 MX2P20592 715 aa7.59□□□□□ -1.19
VPS50-217ENST00000485140 DBN1Q16643 649 aa7.59□□□□□ -1.19
VPS50-217ENST00000485140 C4orf17Q53FE4 359 aa7.59□□□□□ -1.19
VPS50-217ENST00000485140 NLRP8Q86W28 1048 aa7.59□□□□□ -1.19
VPS50-217ENST00000485140 ZDHHC3Q9NYG2 299 aa7.59□□□□□ -1.19
VPS50-217ENST00000485140 ATXN7L1Q9ULK2 861 aaPredicted RBP7.59□□□□□ -1.19
VPS50-217ENST00000485140 USP17L5A8MUK1 530 aa7.58□□□□□ -1.2
VPS50-217ENST00000485140 SCNN1DP51172 638 aa7.58□□□□□ -1.2
VPS50-217ENST00000485140 MARSP56192 900 aaKnown RBP7.58□□□□□ -1.2
VPS50-217ENST00000485140 GTF2IP78347 998 aa7.58□□□□□ -1.2
VPS50-217ENST00000485140 PSME1Q06323 249 aa7.58□□□□□ -1.2
VPS50-217ENST00000485140 KCNMA1Q12791 1236 aa7.58□□□□□ -1.2
VPS50-217ENST00000485140 MTFR1Q15390 333 aa7.58□□□□□ -1.2
VPS50-217ENST00000485140 RNFT1Q5M7Z0 435 aa7.58□□□□□ -1.2
VPS50-217ENST00000485140 GTPBP3Q969Y2 492 aaKnown RBP7.58□□□□□ -1.2
VPS50-217ENST00000485140 CHMP3Q9Y3E7 222 aa7.58□□□□□ -1.2
VPS50-217ENST00000485140 A6NJR5 290 aa7.57□□□□□ -1.2
VPS50-217ENST00000485140 A6NJY4 79 aa7.57□□□□□ -1.2
VPS50-217ENST00000485140 PIK3R2O00459 728 aa7.57□□□□□ -1.2
VPS50-217ENST00000485140 KANK3Q6NY19 840 aa7.57□□□□□ -1.2
VPS50-217ENST00000485140 PROSER2Q86WR7 435 aaPredicted RBP7.57□□□□□ -1.2
VPS50-217ENST00000485140 CUEDC1Q9NWM3 386 aaPredicted RBP7.57□□□□□ -1.2
VPS50-217ENST00000485140 GDF2Q9UK05 429 aaPredicted RBP7.57□□□□□ -1.2
VPS50-217ENST00000485140 M0R2N6 131 aa7.56□□□□□ -1.2
VPS50-217ENST00000485140 ATP9BO43861 1147 aa7.56□□□□□ -1.2
VPS50-217ENST00000485140 MSX1P28360 303 aa7.56□□□□□ -1.2
VPS50-217ENST00000485140 NCOA4Q13772 614 aa7.56□□□□□ -1.2
VPS50-217ENST00000485140 GAS6Q14393 721 aa7.56□□□□□ -1.2
VPS50-217ENST00000485140 ZNF385CQ66K41 422 aaPredicted RBP7.56□□□□□ -1.2
VPS50-217ENST00000485140 PODNQ7Z5L7 613 aa7.56□□□□□ -1.2
VPS50-217ENST00000485140 ADAMTS8Q9UP79 889 aa7.56□□□□□ -1.2
VPS50-217ENST00000485140 PCDHGA11Q9Y5H2 935 aa7.56□□□□□ -1.2
VPS50-217ENST00000485140 IGF1RP08069 1367 aa7.56□□□□□ -1.2
VPS50-217ENST00000485140 PHF20L1A8MW92 1017 aa7.55□□□□□ -1.2
VPS50-217ENST00000485140 BCRP11274 1271 aa7.55□□□□□ -1.2
VPS50-217ENST00000485140 PHKA2P46019 1235 aa7.55□□□□□ -1.2
VPS50-217ENST00000485140 TSGA10IPQ3SY00 556 aa7.55□□□□□ -1.2
VPS50-217ENST00000485140 LARGE2Q8N3Y3 721 aa7.55□□□□□ -1.2
VPS50-217ENST00000485140 POM121Q96HA1 1249 aa7.55□□□□□ -1.2
VPS50-217ENST00000485140 GPAMQ9HCL2 828 aa7.55□□□□□ -1.2
VPS50-217ENST00000485140 PALM3A6NDB9 673 aaPredicted RBP7.54□□□□□ -1.2
VPS50-217ENST00000485140 PLA2G4AP47712 749 aa7.54□□□□□ -1.2
VPS50-217ENST00000485140 HDGFL1Q5TGJ6 251 aa7.54□□□□□ -1.2
VPS50-217ENST00000485140 GOLGA6L1Q8N7Z2 621 aa7.54□□□□□ -1.2
VPS50-217ENST00000485140 USP17L3A6NCW0 530 aa7.53□□□□□ -1.2
VPS50-217ENST00000485140 USP17L4A6NCW7 530 aa7.53□□□□□ -1.2
VPS50-217ENST00000485140 TMEM229AB2RXF0 380 aa7.53□□□□□ -1.2
VPS50-217ENST00000485140 ARHGEF15O94989 841 aa7.53□□□□□ -1.2
VPS50-217ENST00000485140 CELA2BP08218 269 aaPredicted RBP7.53□□□□□ -1.2
VPS50-217ENST00000485140 USP17L2Q6R6M4 530 aa7.53□□□□□ -1.2
VPS50-217ENST00000485140 USP17L1Q7RTZ2 530 aa7.53□□□□□ -1.2
VPS50-217ENST00000485140 AVENQ9NQS1 362 aaPredicted RBP7.53□□□□□ -1.2
VPS50-217ENST00000485140 PCDHGC4Q9Y5F7 938 aa7.53□□□□□ -1.2
VPS50-217ENST00000485140 GJA3Q9Y6H8 435 aa7.53□□□□□ -1.2
VPS50-217ENST00000485140 PIK3CDO00329 1044 aa7.52□□□□□ -1.21
VPS50-217ENST00000485140 FOXK2Q01167 660 aa7.52□□□□□ -1.21
VPS50-217ENST00000485140 LAMC2Q13753 1193 aa7.52□□□□□ -1.21
VPS50-217ENST00000485140 HIF1AQ16665 826 aa7.52□□□□□ -1.21
VPS50-217ENST00000485140 SAMD5Q5TGI4 173 aa7.52□□□□□ -1.21
VPS50-217ENST00000485140 ALYREFQ86V81 257 aaKnown RBP7.52□□□□□ -1.21
VPS50-217ENST00000485140 GAS2L2Q8NHY3 880 aa7.52□□□□□ -1.21
VPS50-217ENST00000485140 OXCT2Q9BYC2 517 aaPredicted RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms