RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 CAPN15O75808 1086 aa10.73□□□□□ -0.69
USP4-210ENST00000483212 BABAM1Q9NWV8 329 aa10.73□□□□□ -0.69
USP4-210ENST00000483212 RNF123Q5XPI4 1314 aa10.73□□□□□ -0.69
USP4-210ENST00000483212 EXOSC9Q06265 439 aaKnown RBP10.72□□□□□ -0.69
USP4-210ENST00000483212 DCAF5Q96JK2 942 aa10.72□□□□□ -0.69
USP4-210ENST00000483212 ONECUT3O60422 494 aaPredicted RBP10.71□□□□□ -0.69
USP4-210ENST00000483212 HSP90AB1P08238 724 aaKnown RBP10.71□□□□□ -0.69
USP4-210ENST00000483212 TAF7Q15545 349 aaPredicted RBP10.71□□□□□ -0.69
USP4-210ENST00000483212 GJD4Q96KN9 370 aaPredicted RBP10.71□□□□□ -0.69
USP4-210ENST00000483212 RCAN3Q9UKA8 241 aa10.71□□□□□ -0.69
USP4-210ENST00000483212 TRPC5Q9UL62 973 aaPredicted RBP10.71□□□□□ -0.69
USP4-210ENST00000483212 LAS1LQ9Y4W2 734 aaKnown RBP10.71□□□□□ -0.69
USP4-210ENST00000483212 PAPPAQ13219 1627 aa10.7□□□□□ -0.7
USP4-210ENST00000483212 EXOC5O00471 708 aa10.7□□□□□ -0.7
USP4-210ENST00000483212 CT47B1P0C2W7 299 aaPredicted RBP10.7□□□□□ -0.7
USP4-210ENST00000483212 FAM98CQ17RN3 349 aaKnown RBP10.7□□□□□ -0.7
USP4-210ENST00000483212 DDX54Q8TDD1 881 aaKnown RBP10.7□□□□□ -0.7
USP4-210ENST00000483212 SLC52A2Q9HAB3 445 aa10.7□□□□□ -0.7
USP4-210ENST00000483212 MIS18AQ9NYP9 233 aa10.7□□□□□ -0.7
USP4-210ENST00000483212 CCDC9Q9Y3X0 531 aaKnown RBP10.7□□□□□ -0.7
USP4-210ENST00000483212 HEG1Q9ULI3 1381 aa10.69□□□□□ -0.7
USP4-210ENST00000483212 VAMP4O75379 141 aa10.69□□□□□ -0.7
USP4-210ENST00000483212 TEFQ10587 303 aa10.69□□□□□ -0.7
USP4-210ENST00000483212 DDB1Q16531 1140 aa10.69□□□□□ -0.7
USP4-210ENST00000483212 KRT24Q2M2I5 525 aa10.69□□□□□ -0.7
USP4-210ENST00000483212 TSPYL6Q8N831 410 aa10.69□□□□□ -0.7
USP4-210ENST00000483212 MARCH10Q8NA82 808 aaPredicted RBP10.69□□□□□ -0.7
USP4-210ENST00000483212 C8orf58Q8NAV2 365 aa10.69□□□□□ -0.7
USP4-210ENST00000483212 TSPYL4Q9UJ04 414 aa10.69□□□□□ -0.7
USP4-210ENST00000483212 SUPT16HQ9Y5B9 1047 aaKnown RBP10.69□□□□□ -0.7
USP4-210ENST00000483212 DOT1LQ8TEK3 1739 aa10.68□□□□□ -0.7
USP4-210ENST00000483212 ERVV-2B6SEH9 535 aa10.68□□□□□ -0.7
USP4-210ENST00000483212 KCNQ3O43525 872 aa10.68□□□□□ -0.7
USP4-210ENST00000483212 RARSP54136 660 aaKnown RBP10.68□□□□□ -0.7
USP4-210ENST00000483212 U3KPZ7 1027 aaPredicted RBP10.68□□□□□ -0.7
USP4-210ENST00000483212 BTBD11A6QL63 1104 aa10.67□□□□□ -0.7
USP4-210ENST00000483212 EIF4A1P60842 406 aaKnown RBP10.67□□□□□ -0.7
USP4-210ENST00000483212 NFATC2IPQ8NCF5 419 aa10.67□□□□□ -0.7
USP4-210ENST00000483212 QTRT2Q9H974 415 aaKnown RBP10.67□□□□□ -0.7
USP4-210ENST00000483212 KCPQ6ZWJ8 1503 aa10.67□□□□□ -0.7
USP4-210ENST00000483212 UBR2Q8IWV8 1755 aa10.67□□□□□ -0.7
USP4-210ENST00000483212 BCL9O00512 1426 aa10.67□□□□□ -0.7
USP4-210ENST00000483212 BCAR3O75815 825 aa10.66□□□□□ -0.7
USP4-210ENST00000483212 TWISTNBQ3B726 338 aaPredicted RBP10.66□□□□□ -0.7
USP4-210ENST00000483212 ZNF428Q96B54 188 aa10.66□□□□□ -0.7
USP4-210ENST00000483212 RGS17Q9UGC6 210 aaPredicted RBP10.66□□□□□ -0.7
USP4-210ENST00000483212 ITGB4P16144 1822 aa10.65□□□□□ -0.7
USP4-210ENST00000483212 SOS1Q07889 1333 aaPredicted RBP10.65□□□□□ -0.7
USP4-210ENST00000483212 RRP1P56182 461 aaKnown RBP10.65□□□□□ -0.7
USP4-210ENST00000483212 CABP4P57796 275 aa10.65□□□□□ -0.7
USP4-210ENST00000483212 ZNF772Q68DY9 489 aaPredicted RBP10.65□□□□□ -0.7
USP4-210ENST00000483212 ELL2O00472 640 aaPredicted RBP10.64□□□□□ -0.71
USP4-210ENST00000483212 BRPF1P55201 1214 aaPredicted RBP10.64□□□□□ -0.71
USP4-210ENST00000483212 SLC39A6Q13433 755 aa10.64□□□□□ -0.71
USP4-210ENST00000483212 ALDH1L2Q3SY69 923 aa10.64□□□□□ -0.71
USP4-210ENST00000483212 ZNF790Q6PG37 636 aa10.64□□□□□ -0.71
USP4-210ENST00000483212 SSH1Q8WYL5 1049 aa10.64□□□□□ -0.71
USP4-210ENST00000483212 C5P01031 1676 aa10.63□□□□□ -0.71
USP4-210ENST00000483212 HOXB7P09629 217 aa10.63□□□□□ -0.71
USP4-210ENST00000483212 RBM6P78332 1123 aaKnown RBP10.63□□□□□ -0.71
USP4-210ENST00000483212 SEPT12Q8IYM1 358 aa10.63□□□□□ -0.71
USP4-210ENST00000483212 MRPL50Q8N5N7 158 aaKnown RBP10.63□□□□□ -0.71
USP4-210ENST00000483212 PIGBQ92521 554 aa10.63□□□□□ -0.71
USP4-210ENST00000483212 HAX1O00165 279 aa10.62□□□□□ -0.71
USP4-210ENST00000483212 GIGYF1O75420 1035 aaPredicted RBP10.62□□□□□ -0.71
USP4-210ENST00000483212 ZNF496Q96IT1 587 aaPredicted RBP10.62□□□□□ -0.71
USP4-210ENST00000483212 RBM42Q9BTD8 480 aaKnown RBP10.62□□□□□ -0.71
USP4-210ENST00000483212 BCL2L13Q9BXK5 485 aa10.62□□□□□ -0.71
USP4-210ENST00000483212 TMOD3Q9NYL9 352 aa10.62□□□□□ -0.71
USP4-210ENST00000483212 NHSQ6T4R5 1651 aa10.62□□□□□ -0.71
USP4-210ENST00000483212 BRWD3Q6RI45 1802 aa10.61□□□□□ -0.71
USP4-210ENST00000483212 PRAMEF22A3QJZ6 481 aa10.61□□□□□ -0.71
USP4-210ENST00000483212 PLIN1O60240 522 aa10.61□□□□□ -0.71
USP4-210ENST00000483212 PRIM1P49642 420 aaKnown RBP10.61□□□□□ -0.71
USP4-210ENST00000483212 ATG3Q9NT62 314 aa10.61□□□□□ -0.71
USP4-210ENST00000483212 SMC4Q9NTJ3 1288 aa10.61□□□□□ -0.71
USP4-210ENST00000483212 LAMB4A4D0S4 1761 aa10.61□□□□□ -0.71
USP4-210ENST00000483212 CICQ96RK0 1608 aaPredicted RBP10.61□□□□□ -0.71
USP4-210ENST00000483212 RGS12O14924 1447 aa10.6□□□□□ -0.71
USP4-210ENST00000483212 POTEAQ6S8J7 498 aa10.6□□□□□ -0.71
USP4-210ENST00000483212 ASAP1Q9ULH1 1129 aa10.6□□□□□ -0.71
USP4-210ENST00000483212 A0A0G2JS52 829 aa10.59□□□□□ -0.71
USP4-210ENST00000483212 TCERG1O14776 1098 aaKnown RBP10.59□□□□□ -0.71
USP4-210ENST00000483212 KCNQ2O43526 872 aa10.59□□□□□ -0.71
USP4-210ENST00000483212 MYT1Q01538 1121 aa10.59□□□□□ -0.71
USP4-210ENST00000483212 C20orf194Q5TEA3 1177 aa10.59□□□□□ -0.71
USP4-210ENST00000483212 TTC5Q8N0Z6 440 aa10.59□□□□□ -0.71
USP4-210ENST00000483212 ACSBG1Q96GR2 724 aa10.59□□□□□ -0.71
USP4-210ENST00000483212 FMNL2Q96PY5 1086 aa10.59□□□□□ -0.71
USP4-210ENST00000483212 TNNQ9UQP3 1299 aa10.59□□□□□ -0.71
USP4-210ENST00000483212 KIF16BQ96L93 1317 aa10.58□□□□□ -0.71
USP4-210ENST00000483212 TJP1Q07157 1748 aa10.58□□□□□ -0.72
USP4-210ENST00000483212 SBF2Q86WG5 1849 aa10.58□□□□□ -0.72
USP4-210ENST00000483212 IRX6P78412 446 aaPredicted RBP10.58□□□□□ -0.72
USP4-210ENST00000483212 FAM182BQ5T319 152 aa10.58□□□□□ -0.72
USP4-210ENST00000483212 HDGFL1Q5TGJ6 251 aa10.58□□□□□ -0.72
USP4-210ENST00000483212 PTF1AQ7RTS3 328 aa10.58□□□□□ -0.72
USP4-210ENST00000483212 ILDR1Q86SU0 546 aaPredicted RBP10.58□□□□□ -0.72
USP4-210ENST00000483212 SLC4A9Q96Q91 983 aa10.58□□□□□ -0.72
USP4-210ENST00000483212 NOB1Q9ULX3 412 aaKnown RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms