RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 AKAP4Q5JQC9 854 aa18.15■□□□□ 0.5
CHD3-211ENST00000481999 INTS3Q68E01 1043 aaKnown RBP18.15■□□□□ 0.5
CHD3-211ENST00000481999 TOM1O60784 492 aa18.15■□□□□ 0.5
CHD3-211ENST00000481999 TEFQ10587 303 aa18.15■□□□□ 0.5
CHD3-211ENST00000481999 FLIIQ13045 1269 aa18.15■□□□□ 0.5
CHD3-211ENST00000481999 FKBP5Q13451 457 aaPredicted RBP18.15■□□□□ 0.5
CHD3-211ENST00000481999 BTBD11A6QL63 1104 aa18.14■□□□□ 0.49
CHD3-211ENST00000481999 C1orf141Q5JVX7 400 aa18.14■□□□□ 0.49
CHD3-211ENST00000481999 STK31Q9BXU1 1019 aa18.14■□□□□ 0.49
CHD3-211ENST00000481999 RNMTO43148 476 aaKnown RBP18.14■□□□□ 0.49
CHD3-211ENST00000481999 HDGFL1Q5TGJ6 251 aa18.14■□□□□ 0.49
CHD3-211ENST00000481999 ANKRD45Q5TZF3 282 aa18.14■□□□□ 0.49
CHD3-211ENST00000481999 EIF4A1P60842 406 aaKnown RBP18.13■□□□□ 0.49
CHD3-211ENST00000481999 PTPRCP08575 1304 aa18.13■□□□□ 0.49
CHD3-211ENST00000481999 MEGF6O75095 1541 aa18.13■□□□□ 0.49
CHD3-211ENST00000481999 APBB1O00213 710 aa18.13■□□□□ 0.49
CHD3-211ENST00000481999 PIP4K2BP78356 416 aa18.13■□□□□ 0.49
CHD3-211ENST00000481999 NCAPD2Q15021 1401 aa18.13■□□□□ 0.49
CHD3-211ENST00000481999 NUCB1Q02818 461 aa18.12■□□□□ 0.49
CHD3-211ENST00000481999 HAP1P54257 671 aaPredicted RBP18.12■□□□□ 0.49
CHD3-211ENST00000481999 CCDC30Q5VVM6 783 aa18.12■□□□□ 0.49
CHD3-211ENST00000481999 FAM208AQ9UK61 1670 aaKnown RBP18.12■□□□□ 0.49
CHD3-211ENST00000481999 SLC39A6Q13433 755 aa18.11■□□□□ 0.49
CHD3-211ENST00000481999 AMOTQ4VCS5 1084 aa18.11■□□□□ 0.49
CHD3-211ENST00000481999 VIRMAQ69YN4 1812 aaKnown RBP18.11■□□□□ 0.49
CHD3-211ENST00000481999 COL18A1P39060 1754 aa18.11■□□□□ 0.49
CHD3-211ENST00000481999 CHD1LQ86WJ1 897 aa18.11■□□□□ 0.49
CHD3-211ENST00000481999 RAPGEF4Q8WZA2 1011 aa18.11■□□□□ 0.49
CHD3-211ENST00000481999 CHPF2Q9P2E5 772 aa18.11■□□□□ 0.49
CHD3-211ENST00000481999 LMO7Q8WWI1 1683 aa18.1■□□□□ 0.49
CHD3-211ENST00000481999 ATP10DQ9P241 1426 aa18.1■□□□□ 0.49
CHD3-211ENST00000481999 NFKBIBQ15653 356 aa18.1■□□□□ 0.49
CHD3-211ENST00000481999 PRDM11Q9NQV5 511 aa18.09■□□□□ 0.49
CHD3-211ENST00000481999 CRYBG1Q9Y4K1 1723 aa18.09■□□□□ 0.49
CHD3-211ENST00000481999 CAMTA1Q9Y6Y1 1673 aa18.08■□□□□ 0.49
CHD3-211ENST00000481999 PROSER3Q2NL68 480 aa18.08■□□□□ 0.49
CHD3-211ENST00000481999 CEP85Q6P2H3 762 aa18.08■□□□□ 0.49
CHD3-211ENST00000481999 C16orf71Q8IYS4 520 aaPredicted RBP18.07■□□□□ 0.48
CHD3-211ENST00000481999 SOS2Q07890 1332 aaPredicted RBP18.07■□□□□ 0.48
CHD3-211ENST00000481999 KDM3BQ7LBC6 1761 aa18.06■□□□□ 0.48
CHD3-211ENST00000481999 KDM6AO15550 1401 aaPredicted RBP18.06■□□□□ 0.48
CHD3-211ENST00000481999 CYP27B1O15528 508 aa18.06■□□□□ 0.48
CHD3-211ENST00000481999 SMARCA5O60264 1052 aaPredicted RBP18.06■□□□□ 0.48
CHD3-211ENST00000481999 NFATC2IPQ8NCF5 419 aa18.06■□□□□ 0.48
CHD3-211ENST00000481999 ROBO1Q9Y6N7 1651 aa18.06■□□□□ 0.48
CHD3-211ENST00000481999 OTUD7AQ8TE49 926 aaPredicted RBP18.06■□□□□ 0.48
CHD3-211ENST00000481999 TATP17735 454 aaPredicted RBP18.05■□□□□ 0.48
CHD3-211ENST00000481999 UPF2Q9HAU5 1272 aaKnown RBP18.05■□□□□ 0.48
CHD3-211ENST00000481999 PHKG2P15735 406 aa18.05■□□□□ 0.48
CHD3-211ENST00000481999 STRN4Q9NRL3 753 aa18.05■□□□□ 0.48
CHD3-211ENST00000481999 PIP4K2AP48426 406 aaPredicted RBP18.04■□□□□ 0.48
CHD3-211ENST00000481999 BECN1Q14457 450 aa18.04■□□□□ 0.48
CHD3-211ENST00000481999 ANKRD44Q8N8A2 993 aa18.04■□□□□ 0.48
CHD3-211ENST00000481999 GCC1Q96CN9 775 aa18.04■□□□□ 0.48
CHD3-211ENST00000481999 CHMP4BQ9H444 224 aaKnown RBP18.04■□□□□ 0.48
CHD3-211ENST00000481999 BABAM1Q9NWV8 329 aa18.04■□□□□ 0.48
CHD3-211ENST00000481999 GIGYF1O75420 1035 aaPredicted RBP18.03■□□□□ 0.48
CHD3-211ENST00000481999 TOM1L2Q6ZVM7 507 aa18.03■□□□□ 0.48
CHD3-211ENST00000481999 PI4KAP2A4QPH2 592 aa18.02■□□□□ 0.48
CHD3-211ENST00000481999 PI4KAP1Q8N8J0 262 aa18.02■□□□□ 0.48
CHD3-211ENST00000481999 FBXO41Q8TF61 875 aa18.02■□□□□ 0.48
CHD3-211ENST00000481999 DCTPP1Q9H773 170 aa18.02■□□□□ 0.48
CHD3-211ENST00000481999 PNMA6EA0A0J9YXQ4 647 aa18.02■□□□□ 0.47
CHD3-211ENST00000481999 CCT4P50991 539 aaKnown RBP18.02■□□□□ 0.47
CHD3-211ENST00000481999 CPDO75976 1380 aa18.01■□□□□ 0.47
CHD3-211ENST00000481999 MFAP1P55081 439 aaKnown RBP18.01■□□□□ 0.47
CHD3-211ENST00000481999 USP44Q9H0E7 712 aa18.01■□□□□ 0.47
CHD3-211ENST00000481999 EXOC6BQ9Y2D4 811 aa18.01■□□□□ 0.47
CHD3-211ENST00000481999 GSE1Q14687 1217 aa18■□□□□ 0.47
CHD3-211ENST00000481999 LARP1Q6PKG0 1096 aaKnown RBP18■□□□□ 0.47
CHD3-211ENST00000481999 SLC52A2Q9HAB3 445 aa18■□□□□ 0.47
CHD3-211ENST00000481999 LRRFIP2Q9Y608 721 aaKnown RBP18■□□□□ 0.47
CHD3-211ENST00000481999 ZNF790Q6PG37 636 aa17.99■□□□□ 0.47
CHD3-211ENST00000481999 TBC1D32Q96NH3 1257 aa17.99■□□□□ 0.47
CHD3-211ENST00000481999 SPG7Q9UQ90 795 aa17.99■□□□□ 0.47
CHD3-211ENST00000481999 NBPF7P0C2Y1 421 aaPredicted RBP17.99■□□□□ 0.47
CHD3-211ENST00000481999 AIMP1Q12904 312 aaKnown RBP17.99■□□□□ 0.47
CHD3-211ENST00000481999 RPAP2Q8IXW5 612 aaPredicted RBP17.99■□□□□ 0.47
CHD3-211ENST00000481999 IFNL2Q8IZJ0 200 aa17.99■□□□□ 0.47
CHD3-211ENST00000481999 SIPA1L3O60292 1781 aaPredicted RBP17.98■□□□□ 0.47
CHD3-211ENST00000481999 ZNF496Q96IT1 587 aaPredicted RBP17.98■□□□□ 0.47
CHD3-211ENST00000481999 TSHZ3Q63HK5 1081 aa17.98■□□□□ 0.47
CHD3-211ENST00000481999 ADCY9O60503 1353 aa17.98■□□□□ 0.47
CHD3-211ENST00000481999 WDR17Q8IZU2 1322 aa17.97■□□□□ 0.47
CHD3-211ENST00000481999 GNAI2P04899 355 aa17.97■□□□□ 0.47
CHD3-211ENST00000481999 GSPT1P15170 499 aaKnown RBP17.97■□□□□ 0.47
CHD3-211ENST00000481999 COL5A2P05997 1499 aaPredicted RBP17.97■□□□□ 0.47
CHD3-211ENST00000481999 CACNA1FO60840 1977 aa17.97■□□□□ 0.47
CHD3-211ENST00000481999 MYL6BP14649 208 aa17.97■□□□□ 0.47
CHD3-211ENST00000481999 PLEKHM2Q8IWE5 1019 aa17.97■□□□□ 0.47
CHD3-211ENST00000481999 HEG1Q9ULI3 1381 aa17.96■□□□□ 0.47
CHD3-211ENST00000481999 DDX54Q8TDD1 881 aaKnown RBP17.96■□□□□ 0.47
CHD3-211ENST00000481999 SCN11AQ9UI33 1791 aa17.96■□□□□ 0.47
CHD3-211ENST00000481999 NHSL1Q5SYE7 1610 aa17.96■□□□□ 0.46
CHD3-211ENST00000481999 AHDC1Q5TGY3 1603 aaPredicted RBP17.95■□□□□ 0.46
CHD3-211ENST00000481999 HSPA1LP34931 641 aa17.95■□□□□ 0.46
CHD3-211ENST00000481999 CWF19L2Q2TBE0 894 aaKnown RBP17.95■□□□□ 0.46
CHD3-211ENST00000481999 DNAAF4Q8WXU2 420 aa17.95■□□□□ 0.46
CHD3-211ENST00000481999 DBF4Q9UBU7 674 aaPredicted RBP17.95■□□□□ 0.46
CHD3-211ENST00000481999 FRAT2O75474 233 aaPredicted RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms