RNA–Protein interactions for RNA: ENST00000481231.5

SMARCE1-210, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 3

Gene SMARCE1, Length 695 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-210ENST00000481231 SIK1P57059 783 aa13.3□□□□□ -0.28
SMARCE1-210ENST00000481231 ITPK1Q13572 414 aa13.3□□□□□ -0.28
SMARCE1-210ENST00000481231 PIGBQ92521 554 aa13.3□□□□□ -0.28
SMARCE1-210ENST00000481231 PUS7Q96PZ0 661 aaKnown RBP13.3□□□□□ -0.28
SMARCE1-210ENST00000481231 CGNL1Q0VF96 1302 aa13.3□□□□□ -0.28
SMARCE1-210ENST00000481231 TATP17735 454 aaPredicted RBP13.29□□□□□ -0.28
SMARCE1-210ENST00000481231 KCNA3P22001 575 aa13.29□□□□□ -0.28
SMARCE1-210ENST00000481231 FAM161AQ3B820 660 aa13.29□□□□□ -0.28
SMARCE1-210ENST00000481231 TESK2Q96S53 571 aa13.29□□□□□ -0.28
SMARCE1-210ENST00000481231 BRCA1P38398 1863 aaKnown RBP13.29□□□□□ -0.28
SMARCE1-210ENST00000481231 DCAF5Q96JK2 942 aa13.28□□□□□ -0.28
SMARCE1-210ENST00000481231 CCDC87Q9NVE4 849 aa13.28□□□□□ -0.28
SMARCE1-210ENST00000481231 C4AP0C0L4 1744 aa13.27□□□□□ -0.28
SMARCE1-210ENST00000481231 MAP2P11137 1827 aaKnown RBP13.27□□□□□ -0.28
SMARCE1-210ENST00000481231 FOXN1O15353 648 aa13.27□□□□□ -0.29
SMARCE1-210ENST00000481231 TMF1P82094 1093 aa13.27□□□□□ -0.29
SMARCE1-210ENST00000481231 RRS1Q15050 365 aaKnown RBP13.27□□□□□ -0.29
SMARCE1-210ENST00000481231 ST20-MTHFSA0A0A6YYL1 179 aa13.26□□□□□ -0.29
SMARCE1-210ENST00000481231 ITGB4P16144 1822 aa13.26□□□□□ -0.29
SMARCE1-210ENST00000481231 RASSF7Q02833 373 aa13.26□□□□□ -0.29
SMARCE1-210ENST00000481231 COG3Q96JB2 828 aa13.26□□□□□ -0.29
SMARCE1-210ENST00000481231 MKRN1Q9UHC7 482 aaKnown RBP13.26□□□□□ -0.29
SMARCE1-210ENST00000481231 ARFGEF1Q9Y6D6 1849 aa13.25□□□□□ -0.29
SMARCE1-210ENST00000481231 RTL1A6NKG5 1358 aa13.25□□□□□ -0.29
SMARCE1-210ENST00000481231 ATP6V1AP38606 617 aa13.25□□□□□ -0.29
SMARCE1-210ENST00000481231 DALRD3Q5D0E6 543 aaKnown RBP13.25□□□□□ -0.29
SMARCE1-210ENST00000481231 NLGN1Q8N2Q7 840 aa13.25□□□□□ -0.29
SMARCE1-210ENST00000481231 PIM2Q9P1W9 311 aa13.25□□□□□ -0.29
SMARCE1-210ENST00000481231 PCDH10Q9P2E7 1040 aa13.25□□□□□ -0.29
SMARCE1-210ENST00000481231 ASAP1Q9ULH1 1129 aa13.25□□□□□ -0.29
SMARCE1-210ENST00000481231 SMG6Q86US8 1419 aaKnown RBP13.24□□□□□ -0.29
SMARCE1-210ENST00000481231 GYS1P13807 737 aa13.24□□□□□ -0.29
SMARCE1-210ENST00000481231 PARP3Q9Y6F1 533 aa13.24□□□□□ -0.29
SMARCE1-210ENST00000481231 VEGFAP15692 232 aaPredicted RBP13.23□□□□□ -0.29
SMARCE1-210ENST00000481231 CHRNA5P30532 468 aa13.23□□□□□ -0.29
SMARCE1-210ENST00000481231 TRAPPC3LQ5T215 181 aa13.23□□□□□ -0.29
SMARCE1-210ENST00000481231 RTCBQ9Y3I0 505 aaKnown RBP13.23□□□□□ -0.29
SMARCE1-210ENST00000481231 ARHGEF1Q92888 912 aaKnown RBP13.22□□□□□ -0.29
SMARCE1-210ENST00000481231 TMOD3Q9NYL9 352 aa13.22□□□□□ -0.29
SMARCE1-210ENST00000481231 GLTPD2A6NH11 291 aa13.21□□□□□ -0.29
SMARCE1-210ENST00000481231 PRDM10Q9NQV6 1147 aa13.21□□□□□ -0.29
SMARCE1-210ENST00000481231 KDRP35968 1356 aa13.2□□□□□ -0.3
SMARCE1-210ENST00000481231 SLC24A1O60721 1099 aa13.2□□□□□ -0.3
SMARCE1-210ENST00000481231 HSP90AB2PQ58FF8 381 aa13.2□□□□□ -0.3
SMARCE1-210ENST00000481231 KDM6AO15550 1401 aaPredicted RBP13.2□□□□□ -0.3
SMARCE1-210ENST00000481231 ZC3H4Q9UPT8 1303 aaKnown RBP13.19□□□□□ -0.3
SMARCE1-210ENST00000481231 POTECB2RU33 542 aa13.19□□□□□ -0.3
SMARCE1-210ENST00000481231 RFC4P35249 363 aa13.19□□□□□ -0.3
SMARCE1-210ENST00000481231 DDR1Q08345 913 aa13.19□□□□□ -0.3
SMARCE1-210ENST00000481231 NKX1-1Q15270 411 aaPredicted RBP13.19□□□□□ -0.3
SMARCE1-210ENST00000481231 ABHD8Q96I13 439 aa13.19□□□□□ -0.3
SMARCE1-210ENST00000481231 SLC4A9Q96Q91 983 aa13.19□□□□□ -0.3
SMARCE1-210ENST00000481231 GGNBP2Q9H3C7 697 aa13.19□□□□□ -0.3
SMARCE1-210ENST00000481231 CREBZFQ9NS37 354 aa13.19□□□□□ -0.3
SMARCE1-210ENST00000481231 ATG3Q9NT62 314 aa13.19□□□□□ -0.3
SMARCE1-210ENST00000481231 SBF1O95248 1867 aa13.19□□□□□ -0.3
SMARCE1-210ENST00000481231 FYB1O15117 783 aa13.18□□□□□ -0.3
SMARCE1-210ENST00000481231 CTCFP49711 727 aaPredicted RBP13.18□□□□□ -0.3
SMARCE1-210ENST00000481231 SRP68Q9UHB9 627 aaKnown RBP13.18□□□□□ -0.3
SMARCE1-210ENST00000481231 INSRP06213 1382 aa13.18□□□□□ -0.3
SMARCE1-210ENST00000481231 ADRA2BP18089 450 aa13.17□□□□□ -0.3
SMARCE1-210ENST00000481231 LMNB1P20700 586 aa13.17□□□□□ -0.3
SMARCE1-210ENST00000481231 LBX1P52954 281 aa13.17□□□□□ -0.3
SMARCE1-210ENST00000481231 AIDAQ96BJ3 306 aa13.17□□□□□ -0.3
SMARCE1-210ENST00000481231 CNTNAP1P78357 1384 aa13.17□□□□□ -0.3
SMARCE1-210ENST00000481231 TIAM2Q8IVF5 1701 aa13.16□□□□□ -0.3
SMARCE1-210ENST00000481231 POTEIP0CG38 1075 aa13.16□□□□□ -0.3
SMARCE1-210ENST00000481231 POTEJP0CG39 1038 aa13.16□□□□□ -0.3
SMARCE1-210ENST00000481231 FKBP8Q14318 412 aa13.16□□□□□ -0.3
SMARCE1-210ENST00000481231 RBM42Q9BTD8 480 aaKnown RBP13.16□□□□□ -0.3
SMARCE1-210ENST00000481231 RPS6KA4O75676 772 aa13.15□□□□□ -0.3
SMARCE1-210ENST00000481231 SPG7Q9UQ90 795 aa13.15□□□□□ -0.3
SMARCE1-210ENST00000481231 FLT4P35916 1363 aa13.15□□□□□ -0.3
SMARCE1-210ENST00000481231 CNTNAP4Q9C0A0 1308 aa13.14□□□□□ -0.31
SMARCE1-210ENST00000481231 MLLT1Q03111 559 aaPredicted RBP13.14□□□□□ -0.31
SMARCE1-210ENST00000481231 COL5A3P25940 1745 aaPredicted RBP13.13□□□□□ -0.31
SMARCE1-210ENST00000481231 VEGFBP49765 207 aa13.13□□□□□ -0.31
SMARCE1-210ENST00000481231 RC3H1Q5TC82 1133 aaKnown RBP13.13□□□□□ -0.31
SMARCE1-210ENST00000481231 CHADLQ6NUI6 762 aa13.13□□□□□ -0.31
SMARCE1-210ENST00000481231 NCAPD2Q15021 1401 aa13.13□□□□□ -0.31
SMARCE1-210ENST00000481231 USP42Q9H9J4 1324 aaKnown RBP13.13□□□□□ -0.31
SMARCE1-210ENST00000481231 NFKBIEO00221 500 aa13.12□□□□□ -0.31
SMARCE1-210ENST00000481231 POLRMTO00411 1230 aaKnown RBP13.12□□□□□ -0.31
SMARCE1-210ENST00000481231 PHKG2P15735 406 aa13.12□□□□□ -0.31
SMARCE1-210ENST00000481231 KIF24Q5T7B8 1368 aa13.11□□□□□ -0.31
SMARCE1-210ENST00000481231 CCDC85CA6NKD9 419 aa13.11□□□□□ -0.31
SMARCE1-210ENST00000481231 HSPA8P11142 646 aaKnown RBP13.11□□□□□ -0.31
SMARCE1-210ENST00000481231 CDCA8Q53HL2 280 aa13.11□□□□□ -0.31
SMARCE1-210ENST00000481231 CARD14Q9BXL6 1004 aa13.11□□□□□ -0.31
SMARCE1-210ENST00000481231 WBP1LQ9NX94 342 aa13.11□□□□□ -0.31
SMARCE1-210ENST00000481231 EMILIN1Q9Y6C2 1016 aa13.11□□□□□ -0.31
SMARCE1-210ENST00000481231 IFNL2Q8IZJ0 200 aa13.1□□□□□ -0.31
SMARCE1-210ENST00000481231 CRKLP46109 303 aaKnown RBP13.09□□□□□ -0.31
SMARCE1-210ENST00000481231 DPY19L2Q6NUT2 758 aa13.09□□□□□ -0.31
SMARCE1-210ENST00000481231 PASKQ96RG2 1323 aa13.09□□□□□ -0.31
SMARCE1-210ENST00000481231 MYH14Q7Z406 1995 aaKnown RBP13.09□□□□□ -0.31
SMARCE1-210ENST00000481231 ZNF831Q5JPB2 1677 aa13.08□□□□□ -0.31
SMARCE1-210ENST00000481231 PPM1GO15355 546 aaPredicted RBP13.07□□□□□ -0.32
SMARCE1-210ENST00000481231 PTCD1O75127 700 aaKnown RBP13.07□□□□□ -0.32
SMARCE1-210ENST00000481231 TM4SF1P30408 202 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms