RNA–Protein interactions for RNA: ENST00000479300.1

VCP-205, Transcript of valosin containing protein, humanhuman

TSL 1 (best)

Gene VCP, Length 559 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-205ENST00000479300 KIF20BQ96Q89 1820 aa9.28□□□□□ -0.92
VCP-205ENST00000479300 FLT4P35916 1363 aa9.28□□□□□ -0.92
VCP-205ENST00000479300 LOC102724428A0A0B4J2F2 783 aa9.28□□□□□ -0.92
VCP-205ENST00000479300 SSFA2P28290 1259 aa9.28□□□□□ -0.92
VCP-205ENST00000479300 SIK1P57059 783 aa9.28□□□□□ -0.92
VCP-205ENST00000479300 ASAP1Q9ULH1 1129 aa9.28□□□□□ -0.92
VCP-205ENST00000479300 EMILIN1Q9Y6C2 1016 aa9.28□□□□□ -0.92
VCP-205ENST00000479300 SMG6Q86US8 1419 aaKnown RBP9.28□□□□□ -0.92
VCP-205ENST00000479300 NSD3Q9BZ95 1437 aa9.28□□□□□ -0.92
VCP-205ENST00000479300 ANKRD26Q9UPS8 1709 aa9.28□□□□□ -0.92
VCP-205ENST00000479300 MMP10P09238 476 aa9.27□□□□□ -0.93
VCP-205ENST00000479300 SMARCC1Q92922 1105 aaPredicted RBP9.27□□□□□ -0.93
VCP-205ENST00000479300 SLC4A9Q96Q91 983 aa9.27□□□□□ -0.93
VCP-205ENST00000479300 NMRK2Q9NPI5 230 aa9.27□□□□□ -0.93
VCP-205ENST00000479300 C10orf71Q711Q0 1435 aa9.27□□□□□ -0.93
VCP-205ENST00000479300 BRCA1P38398 1863 aaKnown RBP9.27□□□□□ -0.93
VCP-205ENST00000479300 KDRP35968 1356 aa9.26□□□□□ -0.93
VCP-205ENST00000479300 WDR90Q96KV7 1748 aa9.26□□□□□ -0.93
VCP-205ENST00000479300 A0A0G2JLW4 131 aa9.26□□□□□ -0.93
VCP-205ENST00000479300 GNPATO15228 680 aa9.26□□□□□ -0.93
VCP-205ENST00000479300 APLP1P51693 650 aa9.26□□□□□ -0.93
VCP-205ENST00000479300 HTRA3P83110 453 aa9.26□□□□□ -0.93
VCP-205ENST00000479300 CARD14Q9BXL6 1004 aa9.26□□□□□ -0.93
VCP-205ENST00000479300 KIF24Q5T7B8 1368 aa9.25□□□□□ -0.93
VCP-205ENST00000479300 ATG3Q9NT62 314 aa9.25□□□□□ -0.93
VCP-205ENST00000479300 C4AP0C0L4 1744 aa9.25□□□□□ -0.93
VCP-205ENST00000479300 TOMM70O94826 608 aa9.24□□□□□ -0.93
VCP-205ENST00000479300 DPEP1P16444 411 aa9.24□□□□□ -0.93
VCP-205ENST00000479300 KCNA3P22001 575 aa9.24□□□□□ -0.93
VCP-205ENST00000479300 EYA1Q99502 592 aa9.24□□□□□ -0.93
VCP-205ENST00000479300 BCS1LQ9Y276 419 aa9.24□□□□□ -0.93
VCP-205ENST00000479300 COL5A3P25940 1745 aaPredicted RBP9.24□□□□□ -0.93
VCP-205ENST00000479300 PHKG2P15735 406 aa9.23□□□□□ -0.93
VCP-205ENST00000479300 ATP6V1AP38606 617 aa9.23□□□□□ -0.93
VCP-205ENST00000479300 COL13A1Q5TAT6 717 aaPredicted RBP9.23□□□□□ -0.93
VCP-205ENST00000479300 TMOD3Q9NYL9 352 aa9.23□□□□□ -0.93
VCP-205ENST00000479300 PCNTO95613 3336 aa9.23□□□□□ -0.93
VCP-205ENST00000479300 ZNF831Q5JPB2 1677 aa9.23□□□□□ -0.93
VCP-205ENST00000479300 MYH14Q7Z406 1995 aaKnown RBP9.23□□□□□ -0.93
VCP-205ENST00000479300 ARFGEF1Q9Y6D6 1849 aa9.22□□□□□ -0.93
VCP-205ENST00000479300 GYS1P13807 737 aa9.22□□□□□ -0.93
VCP-205ENST00000479300 TGFB2P61812 414 aa9.22□□□□□ -0.93
VCP-205ENST00000479300 TMF1P82094 1093 aa9.22□□□□□ -0.93
VCP-205ENST00000479300 CDCA8Q53HL2 280 aa9.22□□□□□ -0.93
VCP-205ENST00000479300 SAMD1Q6SPF0 538 aaPredicted RBP9.22□□□□□ -0.93
VCP-205ENST00000479300 ARHGAP27Q6ZUM4 889 aa9.22□□□□□ -0.93
VCP-205ENST00000479300 ARHGEF1Q92888 912 aaKnown RBP9.22□□□□□ -0.93
VCP-205ENST00000479300 TIMELESSQ9UNS1 1208 aa9.22□□□□□ -0.93
VCP-205ENST00000479300 KCPQ6ZWJ8 1503 aa9.21□□□□□ -0.93
VCP-205ENST00000479300 ADAMTS7Q9UKP4 1686 aa9.21□□□□□ -0.93
VCP-205ENST00000479300 HMGB2P26583 209 aaKnown RBP9.21□□□□□ -0.94
VCP-205ENST00000479300 C9orf131Q5VYM1 1079 aa9.21□□□□□ -0.94
VCP-205ENST00000479300 JMYQ8N9B5 988 aa9.21□□□□□ -0.94
VCP-205ENST00000479300 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.21□□□□□ -0.94
VCP-205ENST00000479300 SPG7Q9UQ90 795 aa9.21□□□□□ -0.94
VCP-205ENST00000479300 WASHC2AQ641Q2 1341 aa9.21□□□□□ -0.94
VCP-205ENST00000479300 KDM6AO15550 1401 aaPredicted RBP9.21□□□□□ -0.94
VCP-205ENST00000479300 PPM1GO15355 546 aaPredicted RBP9.2□□□□□ -0.94
VCP-205ENST00000479300 FCHSD2O94868 740 aa9.2□□□□□ -0.94
VCP-205ENST00000479300 RBM46Q8TBY0 533 aaKnown RBP9.2□□□□□ -0.94
VCP-205ENST00000479300 KLRG1Q96E93 195 aa9.2□□□□□ -0.94
VCP-205ENST00000479300 POLKQ9UBT6 870 aa9.2□□□□□ -0.94
VCP-205ENST00000479300 DDR1Q08345 913 aa9.19□□□□□ -0.94
VCP-205ENST00000479300 EIF4A2Q14240 407 aaKnown RBP9.19□□□□□ -0.94
VCP-205ENST00000479300 TRAPPC3LQ5T215 181 aa9.19□□□□□ -0.94
VCP-205ENST00000479300 RC3H1Q5TC82 1133 aaKnown RBP9.19□□□□□ -0.94
VCP-205ENST00000479300 IFNL2Q8IZJ0 200 aa9.19□□□□□ -0.94
VCP-205ENST00000479300 NLGN1Q8N2Q7 840 aa9.19□□□□□ -0.94
VCP-205ENST00000479300 DCAF5Q96JK2 942 aa9.19□□□□□ -0.94
VCP-205ENST00000479300 SRP68Q9UHB9 627 aaKnown RBP9.19□□□□□ -0.94
VCP-205ENST00000479300 RTCBQ9Y3I0 505 aaKnown RBP9.19□□□□□ -0.94
VCP-205ENST00000479300 CNTNAP4Q9C0A0 1308 aa9.19□□□□□ -0.94
VCP-205ENST00000479300 CLSPNQ9HAW4 1339 aa9.19□□□□□ -0.94
VCP-205ENST00000479300 TJP1Q07157 1748 aa9.19□□□□□ -0.94
VCP-205ENST00000479300 SBF1O95248 1867 aa9.19□□□□□ -0.94
VCP-205ENST00000479300 RPS6KA4O75676 772 aa9.18□□□□□ -0.94
VCP-205ENST00000479300 PRELPP51888 382 aa9.18□□□□□ -0.94
VCP-205ENST00000479300 CCDC87Q9NVE4 849 aa9.18□□□□□ -0.94
VCP-205ENST00000479300 TNRC6CQ9HCJ0 1690 aaKnown RBP9.17□□□□□ -0.94
VCP-205ENST00000479300 PLEKHG2Q9H7P9 1386 aa9.17□□□□□ -0.94
VCP-205ENST00000479300 CHRNA5P30532 468 aa9.17□□□□□ -0.94
VCP-205ENST00000479300 CCER1Q8TC90 406 aaPredicted RBP9.17□□□□□ -0.94
VCP-205ENST00000479300 RBM42Q9BTD8 480 aaKnown RBP9.17□□□□□ -0.94
VCP-205ENST00000479300 RRAGCQ9HB90 399 aa9.17□□□□□ -0.94
VCP-205ENST00000479300 ERVV-2B6SEH9 535 aa9.16□□□□□ -0.94
VCP-205ENST00000479300 CAPN15O75808 1086 aa9.16□□□□□ -0.94
VCP-205ENST00000479300 FSTL1Q12841 308 aa9.16□□□□□ -0.94
VCP-205ENST00000479300 RNF181Q9P0P0 153 aa9.16□□□□□ -0.94
VCP-205ENST00000479300 PARP3Q9Y6F1 533 aa9.16□□□□□ -0.94
VCP-205ENST00000479300 USP42Q9H9J4 1324 aaKnown RBP9.15□□□□□ -0.94
VCP-205ENST00000479300 RFC4P35249 363 aa9.15□□□□□ -0.94
VCP-205ENST00000479300 CRKLP46109 303 aaKnown RBP9.15□□□□□ -0.94
VCP-205ENST00000479300 RASSF7Q02833 373 aa9.15□□□□□ -0.94
VCP-205ENST00000479300 PIM2Q9P1W9 311 aa9.15□□□□□ -0.94
VCP-205ENST00000479300 POLRMTO00411 1230 aaKnown RBP9.14□□□□□ -0.95
VCP-205ENST00000479300 PTCD1O75127 700 aaKnown RBP9.14□□□□□ -0.95
VCP-205ENST00000479300 TM4SF1P30408 202 aa9.14□□□□□ -0.95
VCP-205ENST00000479300 TNNT2P45379 298 aaPredicted RBP9.14□□□□□ -0.95
VCP-205ENST00000479300 DALRD3Q5D0E6 543 aaKnown RBP9.14□□□□□ -0.95
VCP-205ENST00000479300 INTS5Q6P9B9 1019 aaKnown RBP9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms