RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 SBNO2Q9Y2G9 1366 aa9.3□□□□□ -0.92
USP48-208ENST00000479177 FAM187AA6NFU0 413 aa9.3□□□□□ -0.92
USP48-208ENST00000479177 TRIM66O15016 1216 aa9.3□□□□□ -0.92
USP48-208ENST00000479177 ST8SIA5O15466 376 aa9.3□□□□□ -0.92
USP48-208ENST00000479177 TMEM132EQ6IEE7 984 aa9.3□□□□□ -0.92
USP48-208ENST00000479177 TESK2Q96S53 571 aa9.3□□□□□ -0.92
USP48-208ENST00000479177 NPHP4O75161 1426 aaPredicted RBP9.3□□□□□ -0.92
USP48-208ENST00000479177 ZNF697Q5TEC3 545 aa9.29□□□□□ -0.92
USP48-208ENST00000479177 ANKLE2Q86XL3 938 aa9.29□□□□□ -0.92
USP48-208ENST00000479177 ANKLE1Q8NAG6 615 aa9.29□□□□□ -0.92
USP48-208ENST00000479177 ABCC11Q96J66 1382 aa9.28□□□□□ -0.92
USP48-208ENST00000479177 DISP3Q9P2K9 1392 aa9.28□□□□□ -0.92
USP48-208ENST00000479177 CFHP08603 1231 aa9.28□□□□□ -0.92
USP48-208ENST00000479177 TPRNQ4KMQ1 711 aa9.28□□□□□ -0.92
USP48-208ENST00000479177 PLA2G2CQ5R387 149 aa9.28□□□□□ -0.92
USP48-208ENST00000479177 TREML4Q6UXN2 200 aa9.28□□□□□ -0.92
USP48-208ENST00000479177 AK7Q96M32 723 aa9.28□□□□□ -0.92
USP48-208ENST00000479177 PTPRUQ92729 1446 aa9.28□□□□□ -0.92
USP48-208ENST00000479177 KIF7Q2M1P5 1343 aa9.28□□□□□ -0.92
USP48-208ENST00000479177 WASHC2AQ641Q2 1341 aa9.28□□□□□ -0.92
USP48-208ENST00000479177 CENPJQ9HC77 1338 aaPredicted RBP9.28□□□□□ -0.92
USP48-208ENST00000479177 PIK3R4Q99570 1358 aa9.27□□□□□ -0.93
USP48-208ENST00000479177 TULP4Q9NRJ4 1543 aa9.27□□□□□ -0.93
USP48-208ENST00000479177 C11orf95C9JLR9 678 aaPredicted RBP9.27□□□□□ -0.93
USP48-208ENST00000479177 RDH13Q8NBN7 331 aa9.27□□□□□ -0.93
USP48-208ENST00000479177 TRAK1Q9UPV9 953 aa9.27□□□□□ -0.93
USP48-208ENST00000479177 TBX22Q9Y458 520 aa9.27□□□□□ -0.93
USP48-208ENST00000479177 PTCH1Q13635 1447 aa9.27□□□□□ -0.93
USP48-208ENST00000479177 FAM135BQ49AJ0 1406 aa9.27□□□□□ -0.93
USP48-208ENST00000479177 NWD1Q149M9 1564 aa9.27□□□□□ -0.93
USP48-208ENST00000479177 STRCQ7RTU9 1775 aa9.27□□□□□ -0.93
USP48-208ENST00000479177 CHD2O14647 1828 aaKnown RBP9.26□□□□□ -0.93
USP48-208ENST00000479177 AMHR2Q16671 573 aa9.26□□□□□ -0.93
USP48-208ENST00000479177 SLC26A8Q96RN1 970 aa9.26□□□□□ -0.93
USP48-208ENST00000479177 AAASQ9NRG9 546 aa9.26□□□□□ -0.93
USP48-208ENST00000479177 STK26Q9P289 416 aa9.26□□□□□ -0.93
USP48-208ENST00000479177 MYOM1P52179 1685 aa9.26□□□□□ -0.93
USP48-208ENST00000479177 ADGRB2O60241 1585 aa9.25□□□□□ -0.93
USP48-208ENST00000479177 SLC4A3P48751 1232 aa9.25□□□□□ -0.93
USP48-208ENST00000479177 TTLL12Q14166 644 aaPredicted RBP9.25□□□□□ -0.93
USP48-208ENST00000479177 PRR14Q9BWN1 585 aa9.25□□□□□ -0.93
USP48-208ENST00000479177 GPCPD1Q9NPB8 672 aa9.25□□□□□ -0.93
USP48-208ENST00000479177 ROBO2Q9HCK4 1378 aa9.24□□□□□ -0.93
USP48-208ENST00000479177 PLEKHH1Q9ULM0 1364 aa9.24□□□□□ -0.93
USP48-208ENST00000479177 PRKCSHP14314 528 aaPredicted RBP9.24□□□□□ -0.93
USP48-208ENST00000479177 CLCN1P35523 988 aa9.24□□□□□ -0.93
USP48-208ENST00000479177 HSPA2P54652 639 aa9.24□□□□□ -0.93
USP48-208ENST00000479177 TMF1P82094 1093 aa9.24□□□□□ -0.93
USP48-208ENST00000479177 PARP9Q8IXQ6 854 aa9.24□□□□□ -0.93
USP48-208ENST00000479177 PRAM1Q96QH2 718 aa9.24□□□□□ -0.93
USP48-208ENST00000479177 DACH1Q9UI36 760 aa9.24□□□□□ -0.93
USP48-208ENST00000479177 SIRT1Q96EB6 747 aa9.23□□□□□ -0.93
USP48-208ENST00000479177 FAM217BQ9NTX9 383 aaPredicted RBP9.23□□□□□ -0.93
USP48-208ENST00000479177 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.22□□□□□ -0.93
USP48-208ENST00000479177 ACTN4O43707 911 aaKnown RBP9.22□□□□□ -0.93
USP48-208ENST00000479177 CD46P15529 392 aa9.22□□□□□ -0.93
USP48-208ENST00000479177 PDE4DQ08499 809 aa9.22□□□□□ -0.93
USP48-208ENST00000479177 GIGYF2Q6Y7W6 1299 aaKnown RBP9.22□□□□□ -0.93
USP48-208ENST00000479177 NKTRP30414 1462 aaKnown RBP9.21□□□□□ -0.93
USP48-208ENST00000479177 DDX10Q13206 875 aaKnown RBP9.21□□□□□ -0.94
USP48-208ENST00000479177 PUS10Q3MIT2 529 aaKnown RBP9.21□□□□□ -0.94
USP48-208ENST00000479177 DIEXFQ68CQ4 756 aaKnown RBP9.21□□□□□ -0.94
USP48-208ENST00000479177 SULF1Q8IWU6 871 aa9.21□□□□□ -0.94
USP48-208ENST00000479177 PKD2L1Q9P0L9 805 aa9.21□□□□□ -0.94
USP48-208ENST00000479177 POGKQ9P215 609 aa9.21□□□□□ -0.94
USP48-208ENST00000479177 AMOTL2Q9Y2J4 779 aa9.21□□□□□ -0.94
USP48-208ENST00000479177 STRCP1A6NGW2 1772 aa9.21□□□□□ -0.94
USP48-208ENST00000479177 NALCNQ8IZF0 1738 aa9.2□□□□□ -0.94
USP48-208ENST00000479177 SSTR3P32745 418 aaPredicted RBP9.2□□□□□ -0.94
USP48-208ENST00000479177 GCGRP47871 477 aa9.2□□□□□ -0.94
USP48-208ENST00000479177 SAFB2Q14151 953 aaKnown RBP eCLIP9.2□□□□□ -0.94
USP48-208ENST00000479177 CDCA8Q53HL2 280 aa9.2□□□□□ -0.94
USP48-208ENST00000479177 WAPLQ7Z5K2 1190 aa9.2□□□□□ -0.94
USP48-208ENST00000479177 ADH1BP00325 375 aa9.19□□□□□ -0.94
USP48-208ENST00000479177 MS4A1P11836 297 aa9.19□□□□□ -0.94
USP48-208ENST00000479177 KCNA6P17658 529 aa9.19□□□□□ -0.94
USP48-208ENST00000479177 FUT2Q10981 343 aa9.19□□□□□ -0.94
USP48-208ENST00000479177 FOXC1Q12948 553 aa9.19□□□□□ -0.94
USP48-208ENST00000479177 KMT5BQ4FZB7 885 aa9.19□□□□□ -0.94
USP48-208ENST00000479177 EVC2Q86UK5 1308 aa9.19□□□□□ -0.94
USP48-208ENST00000479177 CDC42BPGQ6DT37 1551 aa9.19□□□□□ -0.94
USP48-208ENST00000479177 TOPAZ1Q8N9V7 1692 aa9.19□□□□□ -0.94
USP48-208ENST00000479177 PUS7Q96PZ0 661 aaKnown RBP9.18□□□□□ -0.94
USP48-208ENST00000479177 POLR3GLQ9BT43 218 aa9.18□□□□□ -0.94
USP48-208ENST00000479177 GPBP1L1Q9HC44 474 aaPredicted RBP9.18□□□□□ -0.94
USP48-208ENST00000479177 FMN2Q9NZ56 1722 aa9.17□□□□□ -0.94
USP48-208ENST00000479177 ATP7BP35670 1465 aa9.17□□□□□ -0.94
USP48-208ENST00000479177 ADGRL3Q9HAR2 1447 aa9.17□□□□□ -0.94
USP48-208ENST00000479177 ATAD2Q6PL18 1390 aa9.17□□□□□ -0.94
USP48-208ENST00000479177 HLA-CQ95604 372 aa9.17□□□□□ -0.94
USP48-208ENST00000479177 SLC6A16Q9GZN6 736 aa9.17□□□□□ -0.94
USP48-208ENST00000479177 USP32Q8NFA0 1604 aa9.16□□□□□ -0.94
USP48-208ENST00000479177 NINLQ9Y2I6 1382 aa9.16□□□□□ -0.94
USP48-208ENST00000479177 ITSN1Q15811 1721 aa9.15□□□□□ -0.94
USP48-208ENST00000479177 WASLO00401 505 aaPredicted RBP9.15□□□□□ -0.94
USP48-208ENST00000479177 SCUBE3Q8IX30 993 aa9.15□□□□□ -0.94
USP48-208ENST00000479177 CDK19Q9BWU1 502 aa9.15□□□□□ -0.94
USP48-208ENST00000479177 GMPR2Q9P2T1 348 aaKnown RBP9.15□□□□□ -0.94
USP48-208ENST00000479177 XIRP1Q702N8 1843 aaKnown RBP9.15□□□□□ -0.95
USP48-208ENST00000479177 SRPK2P78362 688 aaKnown RBP9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms