RNA–Protein interactions for RNA: ENST00000477757.5

PDLIM1-202, Transcript of PDZ and LIM domain 1, humanhuman

TSL 2

Gene PDLIM1, Length 850 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-202ENST00000477757 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.31■■■□□ 2.122e-7■□□□□ 9.4
PDLIM1-202ENST00000477757 KDRP35968 1356 aa28.31■■■□□ 2.12
PDLIM1-202ENST00000477757 ATP6V1AP38606 617 aa28.3■■■□□ 2.12
PDLIM1-202ENST00000477757 TGFB2P61812 414 aa28.3■■■□□ 2.12
PDLIM1-202ENST00000477757 ZNF831Q5JPB2 1677 aa28.29■■■□□ 2.12
PDLIM1-202ENST00000477757 WDR90Q96KV7 1748 aa28.29■■■□□ 2.12
PDLIM1-202ENST00000477757 BRCA1P38398 1863 aaKnown RBP28.28■■■□□ 2.12
PDLIM1-202ENST00000477757 BCS1LQ9Y276 419 aa28.28■■■□□ 2.12
PDLIM1-202ENST00000477757 C4AP0C0L4 1744 aa28.28■■■□□ 2.12
PDLIM1-202ENST00000477757 NMRK2Q9NPI5 230 aa28.26■■■□□ 2.11
PDLIM1-202ENST00000477757 A0A0G2JLW4 131 aa28.25■■■□□ 2.11
PDLIM1-202ENST00000477757 PHKG2P15735 406 aa28.25■■■□□ 2.11
PDLIM1-202ENST00000477757 ATG3Q9NT62 314 aa28.25■■■□□ 2.11
PDLIM1-202ENST00000477757 PLEKHG2Q9H7P9 1386 aa28.24■■■□□ 2.11
PDLIM1-202ENST00000477757 COL5A3P25940 1745 aaPredicted RBP28.24■■■□□ 2.11
PDLIM1-202ENST00000477757 IFNL2Q8IZJ0 200 aa28.24■■■□□ 2.11
PDLIM1-202ENST00000477757 NLGN1Q8N2Q7 840 aa28.24■■■□□ 2.11
PDLIM1-202ENST00000477757 WASHC2AQ641Q2 1341 aa28.23■■■□□ 2.11
PDLIM1-202ENST00000477757 EYA1Q99502 592 aa28.23■■■□□ 2.11
PDLIM1-202ENST00000477757 RTCBQ9Y3I0 505 aaKnown RBP28.23■■■□□ 2.11
PDLIM1-202ENST00000477757 ARHGAP27Q6ZUM4 889 aa28.22■■■□□ 2.11
PDLIM1-202ENST00000477757 CARD14Q9BXL6 1004 aa28.22■■■□□ 2.11
PDLIM1-202ENST00000477757 ARFGEF1Q9Y6D6 1849 aa28.21■■■□□ 2.11
PDLIM1-202ENST00000477757 PPM1GO15355 546 aaPredicted RBP28.21■■■□□ 2.11
PDLIM1-202ENST00000477757 ADRA2BP18089 450 aa28.21■■■□□ 2.11
PDLIM1-202ENST00000477757 CDCA8Q53HL2 280 aa28.21■■■□□ 2.11
PDLIM1-202ENST00000477757 TRAPPC3LQ5T215 181 aa28.21■■■□□ 2.11
PDLIM1-202ENST00000477757 RBM46Q8TBY0 533 aaKnown RBP28.21■■■□□ 2.11
PDLIM1-202ENST00000477757 CCDC87Q9NVE4 849 aa28.21■■■□□ 2.11
PDLIM1-202ENST00000477757 DPEP1P16444 411 aa28.2■■■□□ 2.1
PDLIM1-202ENST00000477757 FCHSD2O94868 740 aa28.19■■■□□ 2.1
PDLIM1-202ENST00000477757 CNTNAP4Q9C0A0 1308 aa28.18■■■□□ 2.1
PDLIM1-202ENST00000477757 GYS1P13807 737 aa28.18■■■□□ 2.1
PDLIM1-202ENST00000477757 SLC4A9Q96Q91 983 aa28.18■■■□□ 2.1
PDLIM1-202ENST00000477757 RC3H1Q5TC82 1133 aaKnown RBP28.17■■■□□ 2.1
PDLIM1-202ENST00000477757 ARHGEF1Q92888 912 aaKnown RBP28.17■■■□□ 2.1
PDLIM1-202ENST00000477757 C9orf131Q5VYM1 1079 aa28.15■■■□□ 2.1
PDLIM1-202ENST00000477757 PARP3Q9Y6F1 533 aa28.15■■■□□ 2.1
PDLIM1-202ENST00000477757 KLRG1Q96E93 195 aa28.14■■■□□ 2.1
PDLIM1-202ENST00000477757 KCNA3P22001 575 aa28.13■■■□□ 2.09
PDLIM1-202ENST00000477757 FSTL1Q12841 308 aa28.13■■■□□ 2.09
PDLIM1-202ENST00000477757 C16orf71Q8IYS4 520 aaPredicted RBP28.13■■■□□ 2.09
PDLIM1-202ENST00000477757 JMYQ8N9B5 988 aa28.13■■■□□ 2.09
PDLIM1-202ENST00000477757 KCPQ6ZWJ8 1503 aa28.13■■■□□ 2.09
PDLIM1-202ENST00000477757 ERVV-2B6SEH9 535 aa28.12■■■□□ 2.09
PDLIM1-202ENST00000477757 RPS6KA4O75676 772 aa28.12■■■□□ 2.09
PDLIM1-202ENST00000477757 RFC4P35249 363 aa28.12■■■□□ 2.09
PDLIM1-202ENST00000477757 RBM42Q9BTD8 480 aaKnown RBP28.12■■■□□ 2.09
PDLIM1-202ENST00000477757 TNRC6CQ9HCJ0 1690 aaKnown RBP28.12■■■□□ 2.09
PDLIM1-202ENST00000477757 DCAF5Q96JK2 942 aa28.11■■■□□ 2.09
PDLIM1-202ENST00000477757 POLKQ9UBT6 870 aa28.11■■■□□ 2.09
PDLIM1-202ENST00000477757 MYH14Q7Z406 1995 aaKnown RBP28.1■■■□□ 2.09
PDLIM1-202ENST00000477757 HTRA3P83110 453 aa28.1■■■□□ 2.09
PDLIM1-202ENST00000477757 KDM2BQ8NHM5 1336 aa28.1■■■□□ 2.09
PDLIM1-202ENST00000477757 KDM6AO15550 1401 aaPredicted RBP28.09■■■□□ 2.09
PDLIM1-202ENST00000477757 EIF4A2Q14240 407 aaKnown RBP28.09■■■□□ 2.09
PDLIM1-202ENST00000477757 PIM2Q9P1W9 311 aa28.09■■■□□ 2.09
PDLIM1-202ENST00000477757 PCNTO95613 3336 aa28.08■■■□□ 2.09
PDLIM1-202ENST00000477757 HSP90AB1P08238 724 aaKnown RBP28.07■■■□□ 2.08
PDLIM1-202ENST00000477757 COL13A1Q5TAT6 717 aaPredicted RBP28.07■■■□□ 2.08
PDLIM1-202ENST00000477757 DALRD3Q5D0E6 543 aaKnown RBP28.06■■■□□ 2.08
PDLIM1-202ENST00000477757 RNF181Q9P0P0 153 aa28.06■■■□□ 2.08
PDLIM1-202ENST00000477757 TJP1Q07157 1748 aa28.04■■■□□ 2.08
PDLIM1-202ENST00000477757 USP42Q9H9J4 1324 aaKnown RBP28.03■■■□□ 2.08
PDLIM1-202ENST00000477757 DDR1Q08345 913 aa28.03■■■□□ 2.08
PDLIM1-202ENST00000477757 CRKLP46109 303 aaKnown RBP28.01■■■□□ 2.07
PDLIM1-202ENST00000477757 FKBP8Q14318 412 aa28.01■■■□□ 2.07
PDLIM1-202ENST00000477757 SRP68Q9UHB9 627 aaKnown RBP28.01■■■□□ 2.07
PDLIM1-202ENST00000477757 SBF1O95248 1867 aa28.01■■■□□ 2.07
PDLIM1-202ENST00000477757 ADAMTS7Q9UKP4 1686 aa28■■■□□ 2.07
PDLIM1-202ENST00000477757 CABP4P57796 275 aa28■■■□□ 2.07
PDLIM1-202ENST00000477757 PLEKHO1Q53GL0 409 aaPredicted RBP27.99■■■□□ 2.07
PDLIM1-202ENST00000477757 ZNF530Q6P9A1 599 aaPredicted RBP27.99■■■□□ 2.07
PDLIM1-202ENST00000477757 SMC1BQ8NDV3 1235 aa27.99■■■□□ 2.07
PDLIM1-202ENST00000477757 RRAGCQ9HB90 399 aa27.99■■■□□ 2.07
PDLIM1-202ENST00000477757 ZC3H4Q9UPT8 1303 aaKnown RBP27.98■■■□□ 2.07
PDLIM1-202ENST00000477757 PTCD1O75127 700 aaKnown RBP27.97■■■□□ 2.07
PDLIM1-202ENST00000477757 CHRNA5P30532 468 aa27.97■■■□□ 2.07
PDLIM1-202ENST00000477757 AMOTQ4VCS5 1084 aa27.97■■■□□ 2.07
PDLIM1-202ENST00000477757 POLRMTO00411 1230 aaKnown RBP27.95■■■□□ 2.06
PDLIM1-202ENST00000477757 TNNT2P45379 298 aaPredicted RBP27.95■■■□□ 2.06
PDLIM1-202ENST00000477757 TNS4Q8IZW8 715 aa27.95■■■□□ 2.06
PDLIM1-202ENST00000477757 DLEC1Q9Y238 1755 aa27.92■■■□□ 2.06
PDLIM1-202ENST00000477757 CAPN15O75808 1086 aa27.92■■■□□ 2.06
PDLIM1-202ENST00000477757 MTHFSP49914 203 aa27.92■■■□□ 2.06
PDLIM1-202ENST00000477757 TM4SF1P30408 202 aa27.91■■■□□ 2.06
PDLIM1-202ENST00000477757 TIAM2Q8IVF5 1701 aa27.9■■■□□ 2.06
PDLIM1-202ENST00000477757 NRXN2Q9P2S2 1712 aa27.9■■■□□ 2.06
PDLIM1-202ENST00000477757 PRELPP51888 382 aa27.9■■■□□ 2.06
PDLIM1-202ENST00000477757 RASSF7Q02833 373 aa27.9■■■□□ 2.06
PDLIM1-202ENST00000477757 C1orf141Q5JVX7 400 aa27.9■■■□□ 2.06
PDLIM1-202ENST00000477757 INTS5Q6P9B9 1019 aaKnown RBP27.9■■■□□ 2.06
PDLIM1-202ENST00000477757 NFATC2IPQ8NCF5 419 aa27.89■■■□□ 2.06
PDLIM1-202ENST00000477757 SCN11AQ9UI33 1791 aa27.88■■■□□ 2.05
PDLIM1-202ENST00000477757 AEBP1Q8IUX7 1158 aa27.87■■■□□ 2.05
PDLIM1-202ENST00000477757 AFDNP55196 1824 aaKnown RBP27.87■■■□□ 2.05
PDLIM1-202ENST00000477757 SOS1Q07889 1333 aaPredicted RBP27.87■■■□□ 2.05
PDLIM1-202ENST00000477757 LMNB1P20700 586 aa27.86■■■□□ 2.05
PDLIM1-202ENST00000477757 GLTPD2A6NH11 291 aa27.85■■■□□ 2.05
PDLIM1-202ENST00000477757 ZPR1O75312 459 aa27.85■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms