RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 CEP350Q5VT06 3117 aa16.68■□□□□ 0.26
HDAC6-219ENST00000476625 KDRP35968 1356 aa16.67■□□□□ 0.26
HDAC6-219ENST00000476625 SSFA2P28290 1259 aa16.67■□□□□ 0.26
HDAC6-219ENST00000476625 POLR3GLQ9BT43 218 aa16.67■□□□□ 0.26
HDAC6-219ENST00000476625 SPG7Q9UQ90 795 aa16.67■□□□□ 0.26
HDAC6-219ENST00000476625 WASHC2AQ641Q2 1341 aa16.67■□□□□ 0.26
HDAC6-219ENST00000476625 KIF3CO14782 793 aa16.66■□□□□ 0.26
HDAC6-219ENST00000476625 MMP10P09238 476 aa16.66■□□□□ 0.26
HDAC6-219ENST00000476625 HSPA6P17066 643 aa16.66■□□□□ 0.26
HDAC6-219ENST00000476625 TJP1Q07157 1748 aa16.66■□□□□ 0.26
HDAC6-219ENST00000476625 EIF4A2Q14240 407 aaKnown RBP16.66■□□□□ 0.26
HDAC6-219ENST00000476625 POLKQ9UBT6 870 aa16.66■□□□□ 0.26
HDAC6-219ENST00000476625 ZNF831Q5JPB2 1677 aa16.65■□□□□ 0.26
HDAC6-219ENST00000476625 KDM6AO15550 1401 aaPredicted RBP16.64■□□□□ 0.25
HDAC6-219ENST00000476625 VIRMAQ69YN4 1812 aaKnown RBP16.64■□□□□ 0.25
HDAC6-219ENST00000476625 A0A0G2JLW4 131 aa16.64■□□□□ 0.25
HDAC6-219ENST00000476625 IFNL2Q8IZJ0 200 aa16.63■□□□□ 0.25
HDAC6-219ENST00000476625 RBM42Q9BTD8 480 aaKnown RBP16.63■□□□□ 0.25
HDAC6-219ENST00000476625 C10orf71Q711Q0 1435 aa16.62■□□□□ 0.25
HDAC6-219ENST00000476625 SLC24A1O60721 1099 aa16.62■□□□□ 0.25
HDAC6-219ENST00000476625 BCS1LQ9Y276 419 aa16.62■□□□□ 0.25
HDAC6-219ENST00000476625 ARFGEF1Q9Y6D6 1849 aa16.61■□□□□ 0.25
HDAC6-219ENST00000476625 ADAMTS7Q9UKP4 1686 aa16.61■□□□□ 0.25
HDAC6-219ENST00000476625 WDR90Q96KV7 1748 aa16.6■□□□□ 0.25
HDAC6-219ENST00000476625 DPEP1P16444 411 aa16.6■□□□□ 0.25
HDAC6-219ENST00000476625 CDCA8Q53HL2 280 aa16.6■□□□□ 0.25
HDAC6-219ENST00000476625 ARHGEF1Q92888 912 aaKnown RBP16.6■□□□□ 0.25
HDAC6-219ENST00000476625 SCN11AQ9UI33 1791 aa16.59■□□□□ 0.25
HDAC6-219ENST00000476625 AEBP1Q8IUX7 1158 aa16.59■□□□□ 0.25
HDAC6-219ENST00000476625 NMRK2Q9NPI5 230 aa16.59■□□□□ 0.25
HDAC6-219ENST00000476625 GYS1P13807 737 aa16.58■□□□□ 0.24
HDAC6-219ENST00000476625 TRAPPC3LQ5T215 181 aa16.58■□□□□ 0.24
HDAC6-219ENST00000476625 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.58■□□□□ 0.241e-11■■□□□ 11.5
HDAC6-219ENST00000476625 SRP68Q9UHB9 627 aaKnown RBP16.58■□□□□ 0.24
HDAC6-219ENST00000476625 RTCBQ9Y3I0 505 aaKnown RBP16.58■□□□□ 0.24
HDAC6-219ENST00000476625 ARHGAP27Q6ZUM4 889 aa16.57■□□□□ 0.24
HDAC6-219ENST00000476625 HTRA3P83110 453 aa16.56■□□□□ 0.24
HDAC6-219ENST00000476625 SBF1O95248 1867 aa16.56■□□□□ 0.24
HDAC6-219ENST00000476625 AFDNP55196 1824 aaKnown RBP16.56■□□□□ 0.24
HDAC6-219ENST00000476625 PTCD1O75127 700 aaKnown RBP16.55■□□□□ 0.24
HDAC6-219ENST00000476625 FCHSD2O94868 740 aa16.55■□□□□ 0.24
HDAC6-219ENST00000476625 KCNA3P22001 575 aa16.55■□□□□ 0.24
HDAC6-219ENST00000476625 ZNF530Q6P9A1 599 aaPredicted RBP16.55■□□□□ 0.24
HDAC6-219ENST00000476625 KCPQ6ZWJ8 1503 aa16.55■□□□□ 0.24
HDAC6-219ENST00000476625 CNTNAP4Q9C0A0 1308 aa16.54■□□□□ 0.24
HDAC6-219ENST00000476625 DDR1Q08345 913 aa16.54■□□□□ 0.24
HDAC6-219ENST00000476625 RPS6KA4O75676 772 aa16.53■□□□□ 0.24
HDAC6-219ENST00000476625 RFC4P35249 363 aa16.53■□□□□ 0.24
HDAC6-219ENST00000476625 FKBP8Q14318 412 aa16.53■□□□□ 0.24
HDAC6-219ENST00000476625 ERVV-2B6SEH9 535 aa16.52■□□□□ 0.24
HDAC6-219ENST00000476625 CHRNA5P30532 468 aa16.52■□□□□ 0.24
HDAC6-219ENST00000476625 CABP4P57796 275 aa16.52■□□□□ 0.24
HDAC6-219ENST00000476625 TGFB2P61812 414 aa16.52■□□□□ 0.24
HDAC6-219ENST00000476625 NLGN1Q8N2Q7 840 aa16.52■□□□□ 0.24
HDAC6-219ENST00000476625 DCAF5Q96JK2 942 aa16.52■□□□□ 0.24
HDAC6-219ENST00000476625 CCDC87Q9NVE4 849 aa16.52■□□□□ 0.24
HDAC6-219ENST00000476625 PARP3Q9Y6F1 533 aa16.52■□□□□ 0.24
HDAC6-219ENST00000476625 CCDC88AQ3V6T2 1871 aa16.51■□□□□ 0.23
HDAC6-219ENST00000476625 HMGB2P26583 209 aaKnown RBP16.51■□□□□ 0.23
HDAC6-219ENST00000476625 CRKLP46109 303 aaKnown RBP16.51■□□□□ 0.23
HDAC6-219ENST00000476625 C9orf131Q5VYM1 1079 aa16.51■□□□□ 0.23
HDAC6-219ENST00000476625 PANK3Q9H999 370 aa16.51■□□□□ 0.23
HDAC6-219ENST00000476625 PLEKHO1Q53GL0 409 aaPredicted RBP16.5■□□□□ 0.23
HDAC6-219ENST00000476625 RC3H1Q5TC82 1133 aaKnown RBP16.5■□□□□ 0.23
HDAC6-219ENST00000476625 DNAJC5GQ8N7S2 189 aa16.5■□□□□ 0.23
HDAC6-219ENST00000476625 NFATC2IPQ8NCF5 419 aa16.5■□□□□ 0.23
HDAC6-219ENST00000476625 DLEC1Q9Y238 1755 aa16.5■□□□□ 0.23
HDAC6-219ENST00000476625 TIAM2Q8IVF5 1701 aa16.49■□□□□ 0.23
HDAC6-219ENST00000476625 TNRC6CQ9HCJ0 1690 aaKnown RBP16.49■□□□□ 0.23
HDAC6-219ENST00000476625 USP42Q9H9J4 1324 aaKnown RBP16.48■□□□□ 0.23
HDAC6-219ENST00000476625 TOMM70O94826 608 aa16.48■□□□□ 0.23
HDAC6-219ENST00000476625 HSPA5P11021 654 aaKnown RBP16.48■□□□□ 0.23
HDAC6-219ENST00000476625 MTHFSP49914 203 aa16.48■□□□□ 0.23
HDAC6-219ENST00000476625 SULT6B1Q6IMI4 303 aa16.48■□□□□ 0.23
HDAC6-219ENST00000476625 ADRA2BP18089 450 aa16.47■□□□□ 0.23
HDAC6-219ENST00000476625 APLP1P51693 650 aa16.47■□□□□ 0.23
HDAC6-219ENST00000476625 RASSF7Q02833 373 aa16.47■□□□□ 0.23
HDAC6-219ENST00000476625 TRIM26Q12899 539 aaPredicted RBP16.47■□□□□ 0.23
HDAC6-219ENST00000476625 INTS5Q6P9B9 1019 aaKnown RBP16.47■□□□□ 0.23
HDAC6-219ENST00000476625 DNAJC10Q8IXB1 793 aa16.47■□□□□ 0.23
HDAC6-219ENST00000476625 NRXN2Q9P2S2 1712 aa16.47■□□□□ 0.23
HDAC6-219ENST00000476625 HSP90AB1P08238 724 aaKnown RBP16.46■□□□□ 0.23
HDAC6-219ENST00000476625 LGR6Q9HBX8 967 aa16.46■□□□□ 0.23
HDAC6-219ENST00000476625 CACNA1SQ13698 1873 aa16.46■□□□□ 0.22
HDAC6-219ENST00000476625 POLRMTO00411 1230 aaKnown RBP16.45■□□□□ 0.22
HDAC6-219ENST00000476625 PRELPP51888 382 aa16.45■□□□□ 0.22
HDAC6-219ENST00000476625 SLC39A6Q13433 755 aa16.45■□□□□ 0.22
HDAC6-219ENST00000476625 C1orf141Q5JVX7 400 aa16.45■□□□□ 0.22
HDAC6-219ENST00000476625 USPL1Q5W0Q7 1092 aa16.45■□□□□ 0.22
HDAC6-219ENST00000476625 PCGF6Q9BYE7 350 aa16.45■□□□□ 0.22
HDAC6-219ENST00000476625 RNF181Q9P0P0 153 aa16.45■□□□□ 0.22
HDAC6-219ENST00000476625 PIM2Q9P1W9 311 aa16.45■□□□□ 0.22
HDAC6-219ENST00000476625 UBR2Q8IWV8 1755 aa16.45■□□□□ 0.22
HDAC6-219ENST00000476625 ANKRD31Q8N7Z5 1873 aa16.45■□□□□ 0.22
HDAC6-219ENST00000476625 PLEKHG2Q9H7P9 1386 aa16.44■□□□□ 0.22
HDAC6-219ENST00000476625 MORC1Q86VD1 984 aa16.44■□□□□ 0.22
HDAC6-219ENST00000476625 RRAGCQ9HB90 399 aa16.44■□□□□ 0.22
HDAC6-219ENST00000476625 COL11A2P13942 1736 aaPredicted RBP16.44■□□□□ 0.22
HDAC6-219ENST00000476625 MRC1P22897 1456 aa16.43■□□□□ 0.22
HDAC6-219ENST00000476625 CARMIL3Q8ND23 1372 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms