RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.79■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 YBX3P16989 372 aaKnown RBP eCLIP16.79■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 IL13P35225 146 aa16.79■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 AMOTQ4VCS5 1084 aa16.79■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 PLEKHO1Q53GL0 409 aaPredicted RBP16.79■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 AK7Q96M32 723 aa16.79■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 KNSTRNQ9Y448 316 aa16.79■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 KDM6AO15550 1401 aaPredicted RBP16.79■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 KIF7Q2M1P5 1343 aa16.78■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 HSP90AB1P08238 724 aaKnown RBP16.78■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 ATP6V1AP38606 617 aa16.78■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 AEBP1Q8IUX7 1158 aa16.78■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 KLHL34Q8N239 644 aa16.78■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 MYH14Q7Z406 1995 aaKnown RBP16.77■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 COL5A3P25940 1745 aaPredicted RBP16.76■□□□□ 0.27
MSH5-SAPCD1-205ENST00000476085 GRIN3BO60391 1043 aa16.75■□□□□ 0.27
MSH5-SAPCD1-205ENST00000476085 RC3H1Q5TC82 1133 aaKnown RBP16.75■□□□□ 0.27
MSH5-SAPCD1-205ENST00000476085 ZNF530Q6P9A1 599 aaPredicted RBP16.75■□□□□ 0.27
MSH5-SAPCD1-205ENST00000476085 GNPATO15228 680 aa16.74■□□□□ 0.27
MSH5-SAPCD1-205ENST00000476085 PHF14O94880 888 aa16.74■□□□□ 0.27
MSH5-SAPCD1-205ENST00000476085 SULT6B1Q6IMI4 303 aa16.74■□□□□ 0.27
MSH5-SAPCD1-205ENST00000476085 SCN11AQ9UI33 1791 aa16.74■□□□□ 0.27
MSH5-SAPCD1-205ENST00000476085 MTHFSP49914 203 aa16.72■□□□□ 0.27
MSH5-SAPCD1-205ENST00000476085 KIF13BQ9NQT8 1826 aa16.72■□□□□ 0.27
MSH5-SAPCD1-205ENST00000476085 CNTNAP4Q9C0A0 1308 aa16.71■□□□□ 0.27
MSH5-SAPCD1-205ENST00000476085 CABP4P57796 275 aa16.71■□□□□ 0.27
MSH5-SAPCD1-205ENST00000476085 PELP1Q8IZL8 1130 aaKnown RBP16.71■□□□□ 0.27
MSH5-SAPCD1-205ENST00000476085 NFATC2IPQ8NCF5 419 aa16.71■□□□□ 0.27
MSH5-SAPCD1-205ENST00000476085 CICQ96RK0 1608 aaPredicted RBP16.7■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 ADRA2BP18089 450 aa16.7■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 ARHGEF1Q92888 912 aaKnown RBP16.7■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 NPC1L1Q9UHC9 1359 aa16.69■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 VIRMAQ69YN4 1812 aaKnown RBP16.69■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 RPS6KA4O75676 772 aa16.69■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 TRAPPC3LQ5T215 181 aa16.69■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 RBM42Q9BTD8 480 aaKnown RBP16.69■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 RTCBQ9Y3I0 505 aaKnown RBP16.69■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 KIAA1551Q9HCM1 1747 aa16.68■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 AKAP4Q5JQC9 854 aa16.68■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 C1orf141Q5JVX7 400 aa16.68■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 ADAMTS7Q9UKP4 1686 aa16.68■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 C1QTNF8P60827 252 aa16.67■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 NLGN1Q8N2Q7 840 aa16.67■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 TJP1Q07157 1748 aa16.67■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 MMP10P09238 476 aa16.66■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 C4AP0C0L4 1744 aa16.66■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 GYS1P13807 737 aa16.66■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 LGR6Q9HBX8 967 aa16.66■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 PTCD1O75127 700 aaKnown RBP16.65■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 MRC1P22897 1456 aa16.65■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 ADCY9O60503 1353 aa16.64■□□□□ 0.26
MSH5-SAPCD1-205ENST00000476085 RNMTO43148 476 aaKnown RBP16.64■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 CRKLP46109 303 aaKnown RBP16.64■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 INTS5Q6P9B9 1019 aaKnown RBP16.64■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 SLC52A2Q9HAB3 445 aa16.64■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 COL3A1P02461 1466 aaPredicted RBP16.64■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 DIAPH1O60610 1272 aaKnown RBP16.63■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 HMOX1P09601 288 aa16.63■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 TGFB2P61812 414 aa16.63■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 MTHFSDQ2M296 383 aaKnown RBP16.63■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 CC2D1BQ5T0F9 858 aaKnown RBP16.63■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 C10orf71Q711Q0 1435 aa16.62■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 PXDNLA1KZ92 1463 aa16.62■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 N4BP2Q86UW6 1770 aaPredicted RBP16.62■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 RFC4P35249 363 aa16.62■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 BRCA1P38398 1863 aaKnown RBP16.62■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 ATP10DQ9P241 1426 aa16.6■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 KCPQ6ZWJ8 1503 aa16.6■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 GIGYF1O75420 1035 aaPredicted RBP16.59■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 CYP19A1P11511 503 aaPredicted RBP16.59■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 KCNA3P22001 575 aa16.59■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 USP42Q9H9J4 1324 aaKnown RBP16.59■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 UBR2Q8IWV8 1755 aa16.59■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 CEP350Q5VT06 3117 aa16.59■□□□□ 0.25
MSH5-SAPCD1-205ENST00000476085 TM4SF1P30408 202 aa16.58■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 SLC39A6Q13433 755 aa16.58■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 FKBP8Q14318 412 aa16.58■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 DNAJC10Q8IXB1 793 aa16.58■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 SRP68Q9UHB9 627 aaKnown RBP16.58■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 SOS1Q07889 1333 aaPredicted RBP16.57■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 A0A0G2JLW4 131 aa16.57■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 VSIG10Q8N0Z9 540 aa16.57■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 CCDC87Q9NVE4 849 aa16.57■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 PARP3Q9Y6F1 533 aa16.57■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 DPEP1P16444 411 aa16.56■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 DDR1Q08345 913 aa16.56■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 IL17REQ8NFR9 667 aa16.56■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 WWC3Q9ULE0 1092 aa16.56■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 SIPA1L3O60292 1781 aaPredicted RBP16.56■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 ARFGEF1Q9Y6D6 1849 aa16.55■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 POLRMTO00411 1230 aaKnown RBP16.54■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 NARFQ9UHQ1 456 aa16.53■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 NRXN2Q9P2S2 1712 aa16.53■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 AFDNP55196 1824 aaKnown RBP16.52■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 SENP3-EIF4A1A0A087X0R7 540 aa16.52■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 BCL2L12Q9HB09 334 aa16.52■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 GPBP1L1Q9HC44 474 aaPredicted RBP16.52■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 ZBTB1Q9Y2K1 713 aa16.52■□□□□ 0.24
MSH5-SAPCD1-205ENST00000476085 CEMIPQ8WUJ3 1361 aa16.51■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 GNAT3A8MTJ3 354 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms