RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SCN11AQ9UI33 1791 aa19.17■□□□□ 0.66
UPF3A-204ENST00000475218 MSL1Q68DK7 614 aa19.16■□□□□ 0.66
UPF3A-204ENST00000475218 COL5A3P25940 1745 aaPredicted RBP19.15■□□□□ 0.66
UPF3A-204ENST00000475218 HSP90AB1P08238 724 aaKnown RBP19.15■□□□□ 0.66
UPF3A-204ENST00000475218 HMOX1P09601 288 aa19.15■□□□□ 0.66
UPF3A-204ENST00000475218 CNGB1Q14028 1251 aaPredicted RBP19.15■□□□□ 0.66
UPF3A-204ENST00000475218 MSH5O43196 834 aa19.14■□□□□ 0.66
UPF3A-204ENST00000475218 AK7Q96M32 723 aa19.14■□□□□ 0.65
UPF3A-204ENST00000475218 ADAMTS7Q9UKP4 1686 aa19.13■□□□□ 0.65
UPF3A-204ENST00000475218 VIRMAQ69YN4 1812 aaKnown RBP19.13■□□□□ 0.65
UPF3A-204ENST00000475218 DIAPH1O60610 1272 aaKnown RBP19.13■□□□□ 0.65
UPF3A-204ENST00000475218 POLD1P28340 1107 aa19.13■□□□□ 0.65
UPF3A-204ENST00000475218 ATP6V1AP38606 617 aa19.13■□□□□ 0.65
UPF3A-204ENST00000475218 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.12■□□□□ 0.65
UPF3A-204ENST00000475218 NLGN2Q8NFZ4 835 aa19.12■□□□□ 0.65
UPF3A-204ENST00000475218 PHF14O94880 888 aa19.11■□□□□ 0.65
UPF3A-204ENST00000475218 C1orf141Q5JVX7 400 aa19.11■□□□□ 0.65
UPF3A-204ENST00000475218 FLAD1Q8NFF5 587 aa19.11■□□□□ 0.65
UPF3A-204ENST00000475218 CABP4P57796 275 aa19.11■□□□□ 0.65
UPF3A-204ENST00000475218 NFATC2IPQ8NCF5 419 aa19.11■□□□□ 0.65
UPF3A-204ENST00000475218 LGR6Q9HBX8 967 aa19.11■□□□□ 0.65
UPF3A-204ENST00000475218 MRC1P22897 1456 aa19.11■□□□□ 0.65
UPF3A-204ENST00000475218 MYH14Q7Z406 1995 aaKnown RBP19.11■□□□□ 0.65
UPF3A-204ENST00000475218 SSFA2P28290 1259 aa19.1■□□□□ 0.65
UPF3A-204ENST00000475218 AKAP4Q5JQC9 854 aa19.1■□□□□ 0.65
UPF3A-204ENST00000475218 TJP1Q07157 1748 aa19.1■□□□□ 0.65
UPF3A-204ENST00000475218 CICQ96RK0 1608 aaPredicted RBP19.09■□□□□ 0.65
UPF3A-204ENST00000475218 MTHFSDQ2M296 383 aaKnown RBP19.09■□□□□ 0.65
UPF3A-204ENST00000475218 GNPATO15228 680 aa19.09■□□□□ 0.65
UPF3A-204ENST00000475218 YY1P25490 414 aa19.09■□□□□ 0.65
UPF3A-204ENST00000475218 HMGB2P26583 209 aaKnown RBP19.09■□□□□ 0.65
UPF3A-204ENST00000475218 RBM42Q9BTD8 480 aaKnown RBP19.09■□□□□ 0.65
UPF3A-204ENST00000475218 KLHL34Q8N239 644 aa19.08■□□□□ 0.64
UPF3A-204ENST00000475218 DCAF8L1A6NGE4 600 aa19.06■□□□□ 0.64
UPF3A-204ENST00000475218 RNMTO43148 476 aaKnown RBP19.06■□□□□ 0.64
UPF3A-204ENST00000475218 PTCD1O75127 700 aaKnown RBP19.06■□□□□ 0.64
UPF3A-204ENST00000475218 C4AP0C0L4 1744 aa19.05■□□□□ 0.64
UPF3A-204ENST00000475218 CNTNAP4Q9C0A0 1308 aa19.05■□□□□ 0.64
UPF3A-204ENST00000475218 SLC52A2Q9HAB3 445 aa19.05■□□□□ 0.64
UPF3A-204ENST00000475218 RC3H1Q5TC82 1133 aaKnown RBP19.04■□□□□ 0.64
UPF3A-204ENST00000475218 KCPQ6ZWJ8 1503 aa19.04■□□□□ 0.64
UPF3A-204ENST00000475218 PPP2R1AP30153 589 aa19.04■□□□□ 0.64
UPF3A-204ENST00000475218 CHD4Q14839 1912 aa19.03■□□□□ 0.64
UPF3A-204ENST00000475218 U2SURPO15042 1029 aaKnown RBP19.03■□□□□ 0.64
UPF3A-204ENST00000475218 YBX3P16989 372 aaKnown RBP eCLIP19.01■□□□□ 0.63
UPF3A-204ENST00000475218 SLC39A6Q13433 755 aa19.01■□□□□ 0.63
UPF3A-204ENST00000475218 ARHGEF1Q92888 912 aaKnown RBP19.01■□□□□ 0.63
UPF3A-204ENST00000475218 RTCBQ9Y3I0 505 aaKnown RBP19.01■□□□□ 0.63
UPF3A-204ENST00000475218 UBR2Q8IWV8 1755 aa19.01■□□□□ 0.63
UPF3A-204ENST00000475218 SIPA1L3O60292 1781 aaPredicted RBP19.01■□□□□ 0.63
UPF3A-204ENST00000475218 RPS6KA4O75676 772 aa19.01■□□□□ 0.63
UPF3A-204ENST00000475218 PHACTR3Q96KR7 559 aa19.01■□□□□ 0.63
UPF3A-204ENST00000475218 RSPH6AQ9H0K4 717 aa19.01■□□□□ 0.63
UPF3A-204ENST00000475218 CD2APQ9Y5K6 639 aa19.01■□□□□ 0.63
UPF3A-204ENST00000475218 CRKLP46109 303 aaKnown RBP19■□□□□ 0.63
UPF3A-204ENST00000475218 GPR162Q16538 588 aa18.99■□□□□ 0.63
UPF3A-204ENST00000475218 INTS5Q6P9B9 1019 aaKnown RBP18.99■□□□□ 0.63
UPF3A-204ENST00000475218 IL17REQ8NFR9 667 aa18.99■□□□□ 0.63
UPF3A-204ENST00000475218 KIAA1551Q9HCM1 1747 aa18.99■□□□□ 0.63
UPF3A-204ENST00000475218 TRAPPC3LQ5T215 181 aa18.98■□□□□ 0.63
UPF3A-204ENST00000475218 GYS1P13807 737 aa18.98■□□□□ 0.63
UPF3A-204ENST00000475218 ADRA2BP18089 450 aa18.98■□□□□ 0.63
UPF3A-204ENST00000475218 DNAJC10Q8IXB1 793 aa18.98■□□□□ 0.63
UPF3A-204ENST00000475218 KIF13BQ9NQT8 1826 aa18.97■□□□□ 0.63
UPF3A-204ENST00000475218 MMP10P09238 476 aa18.97■□□□□ 0.63
UPF3A-204ENST00000475218 PRKAR2BP31323 418 aa18.96■□□□□ 0.63
UPF3A-204ENST00000475218 PELP1Q8IZL8 1130 aaKnown RBP18.96■□□□□ 0.63
UPF3A-204ENST00000475218 CEMIPQ8WUJ3 1361 aa18.95■□□□□ 0.62
UPF3A-204ENST00000475218 CYP19A1P11511 503 aaPredicted RBP18.95■□□□□ 0.62
UPF3A-204ENST00000475218 GAS2L2Q8NHY3 880 aa18.95■□□□□ 0.62
UPF3A-204ENST00000475218 CFAP53Q96M91 514 aa18.95■□□□□ 0.62
UPF3A-204ENST00000475218 SRP68Q9UHB9 627 aaKnown RBP18.95■□□□□ 0.62
UPF3A-204ENST00000475218 GNAT3A8MTJ3 354 aa18.94■□□□□ 0.62
UPF3A-204ENST00000475218 ZNF784Q8NCA9 323 aaPredicted RBP18.94■□□□□ 0.62
UPF3A-204ENST00000475218 RFC4P35249 363 aa18.93■□□□□ 0.62
UPF3A-204ENST00000475218 NLGN1Q8N2Q7 840 aa18.93■□□□□ 0.62
UPF3A-204ENST00000475218 USP42Q9H9J4 1324 aaKnown RBP18.93■□□□□ 0.62
UPF3A-204ENST00000475218 C10orf71Q711Q0 1435 aa18.92■□□□□ 0.62
UPF3A-204ENST00000475218 CCDC87Q9NVE4 849 aa18.92■□□□□ 0.62
UPF3A-204ENST00000475218 SOS1Q07889 1333 aaPredicted RBP18.92■□□□□ 0.62
UPF3A-204ENST00000475218 U2AF1L5P0DN76 240 aaPredicted RBP18.91■□□□□ 0.62
UPF3A-204ENST00000475218 U2AF1Q01081 240 aaKnown RBP eCLIP18.91■□□□□ 0.62
UPF3A-204ENST00000475218 PXDNLA1KZ92 1463 aa18.91■□□□□ 0.62
UPF3A-204ENST00000475218 FKBP8Q14318 412 aa18.91■□□□□ 0.62
UPF3A-204ENST00000475218 ZBTB1Q9Y2K1 713 aa18.91■□□□□ 0.62
UPF3A-204ENST00000475218 N4BP2Q86UW6 1770 aaPredicted RBP18.91■□□□□ 0.62
UPF3A-204ENST00000475218 VSIG10Q8N0Z9 540 aa18.9■□□□□ 0.62
UPF3A-204ENST00000475218 ZNF496Q96IT1 587 aaPredicted RBP18.9■□□□□ 0.62
UPF3A-204ENST00000475218 NUDCQ9Y266 331 aa18.9■□□□□ 0.62
UPF3A-204ENST00000475218 FCHSD2O94868 740 aa18.89■□□□□ 0.61
UPF3A-204ENST00000475218 DDR1Q08345 913 aa18.89■□□□□ 0.61
UPF3A-204ENST00000475218 WWC3Q9ULE0 1092 aa18.89■□□□□ 0.61
UPF3A-204ENST00000475218 KCNQ3O43525 872 aa18.88■□□□□ 0.61
UPF3A-204ENST00000475218 ZNF790Q6PG37 636 aa18.88■□□□□ 0.61
UPF3A-204ENST00000475218 TEFQ10587 303 aa18.88■□□□□ 0.61
UPF3A-204ENST00000475218 GRIN3BO60391 1043 aa18.87■□□□□ 0.61
UPF3A-204ENST00000475218 HEG1Q9ULI3 1381 aa18.87■□□□□ 0.61
UPF3A-204ENST00000475218 BRCA1P38398 1863 aaKnown RBP18.87■□□□□ 0.61
UPF3A-204ENST00000475218 BCL2L12Q9HB09 334 aa18.86■□□□□ 0.61
UPF3A-204ENST00000475218 COL15A1P39059 1388 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms