RNA–Protein interactions for RNA: ENST00000474586.5

TRA2A-204, Transcript of transformer 2 alpha homolog, human

TSL 3

Gene TRA2A, Length 868 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRA2A-204	ENST00000474586	ITPK1	Q13572	414 aa		28.84	■■■□□ 2.21
TRA2A-204	ENST00000474586	NLGN2	Q8NFZ4	835 aa		28.84	■■■□□ 2.21
TRA2A-204	ENST00000474586	GPR162	Q16538	588 aa		28.83	■■■□□ 2.21
TRA2A-204	ENST00000474586	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	28.82	■■■□□ 2.2
TRA2A-204	ENST00000474586	CC2D1B	Q5T0F9	858 aa	Known RBP	28.82	■■■□□ 2.2
TRA2A-204	ENST00000474586	UBR3	Q6ZT12	1888 aa		28.82	■■■□□ 2.2
TRA2A-204	ENST00000474586	MTHFS	P49914	203 aa		28.81	■■■□□ 2.2
TRA2A-204	ENST00000474586	KDM6A	O15550	1401 aa	Predicted RBP	28.8	■■■□□ 2.2
TRA2A-204	ENST00000474586	PELP1	Q8IZL8	1130 aa	Known RBP	28.8	■■■□□ 2.2
TRA2A-204	ENST00000474586	KDR	P35968	1356 aa		28.79	■■■□□ 2.2
TRA2A-204	ENST00000474586	CABP4	P57796	275 aa		28.79	■■■□□ 2.2
TRA2A-204	ENST00000474586	C1orf141	Q5JVX7	400 aa		28.79	■■■□□ 2.2
TRA2A-204	ENST00000474586	RBM42	Q9BTD8	480 aa	Known RBP	28.78	■■■□□ 2.2
TRA2A-204	ENST00000474586	GNPAT	O15228	680 aa		28.77	■■■□□ 2.2
TRA2A-204	ENST00000474586	SSFA2	P28290	1259 aa		28.77	■■■□□ 2.2
TRA2A-204	ENST00000474586	SLC4A9	Q96Q91	983 aa		28.77	■■■□□ 2.2
TRA2A-204	ENST00000474586	CNGB1	Q14028	1251 aa	Predicted RBP	28.75	■■■□□ 2.19
TRA2A-204	ENST00000474586	CHD4	Q14839	1912 aa		28.74	■■■□□ 2.19
TRA2A-204	ENST00000474586	HMOX1	P09601	288 aa		28.72	■■■□□ 2.19
TRA2A-204	ENST00000474586	NFATC2IP	Q8NCF5	419 aa		28.72	■■■□□ 2.19
TRA2A-204	ENST00000474586	ZNF784	Q8NCA9	323 aa	Predicted RBP	28.71	■■■□□ 2.19
TRA2A-204	ENST00000474586	CD2AP	Q9Y5K6	639 aa		28.71	■■■□□ 2.19
TRA2A-204	ENST00000474586	UTRN	P46939	3433 aa		28.71	■■■□□ 2.19
TRA2A-204	ENST00000474586	DIAPH1	O60610	1272 aa	Known RBP	28.69	■■■□□ 2.18
TRA2A-204	ENST00000474586	ZNF831	Q5JPB2	1677 aa		28.68	■■■□□ 2.18
TRA2A-204	ENST00000474586	PTCD1	O75127	700 aa	Known RBP	28.68	■■■□□ 2.18
TRA2A-204	ENST00000474586	YBX3	P16989	372 aa	Known RBP eCLIP	28.68	■■■□□ 2.18	1e-9	■□□□□ 9.9
TRA2A-204	ENST00000474586	AKAP4	Q5JQC9	854 aa		28.68	■■■□□ 2.18
TRA2A-204	ENST00000474586	NPC1L1	Q9UHC9	1359 aa		28.67	■■■□□ 2.18
TRA2A-204	ENST00000474586	RTCB	Q9Y3I0	505 aa	Known RBP	28.67	■■■□□ 2.18
TRA2A-204	ENST00000474586	TRAPPC3L	Q5T215	181 aa		28.66	■■■□□ 2.18
TRA2A-204	ENST00000474586	RC3H1	Q5TC82	1133 aa	Known RBP	28.66	■■■□□ 2.18
TRA2A-204	ENST00000474586	SCN11A	Q9UI33	1791 aa		28.65	■■■□□ 2.18
TRA2A-204	ENST00000474586	LGR6	Q9HBX8	967 aa		28.65	■■■□□ 2.18
TRA2A-204	ENST00000474586	COL5A3	P25940	1745 aa	Predicted RBP	28.64	■■■□□ 2.18
TRA2A-204	ENST00000474586	CNTNAP4	Q9C0A0	1308 aa		28.64	■■■□□ 2.17
TRA2A-204	ENST00000474586	GRIN3B	O60391	1043 aa		28.62	■■■□□ 2.17
TRA2A-204	ENST00000474586	MTHFSD	Q2M296	383 aa	Known RBP	28.62	■■■□□ 2.17
TRA2A-204	ENST00000474586	ARHGEF1	Q92888	912 aa	Known RBP	28.62	■■■□□ 2.17
TRA2A-204	ENST00000474586	RPS6KA4	O75676	772 aa		28.61	■■■□□ 2.17
TRA2A-204	ENST00000474586	RNMT	O43148	476 aa	Known RBP	28.6	■■■□□ 2.17
TRA2A-204	ENST00000474586	SLC52A2	Q9HAB3	445 aa		28.6	■■■□□ 2.17
TRA2A-204	ENST00000474586	COL3A1	P02461	1466 aa	Predicted RBP	28.59	■■■□□ 2.17
TRA2A-204	ENST00000474586	MYH14	Q7Z406	1995 aa	Known RBP	28.59	■■■□□ 2.17
TRA2A-204	ENST00000474586	MMP10	P09238	476 aa		28.59	■■■□□ 2.17
TRA2A-204	ENST00000474586	ADRA2B	P18089	450 aa		28.59	■■■□□ 2.17
TRA2A-204	ENST00000474586	U2SURP	O15042	1029 aa	Known RBP	28.58	■■■□□ 2.17
TRA2A-204	ENST00000474586	RFC4	P35249	363 aa		28.57	■■■□□ 2.16
TRA2A-204	ENST00000474586	CRKL	P46109	303 aa	Known RBP	28.57	■■■□□ 2.16
TRA2A-204	ENST00000474586	NLGN1	Q8N2Q7	840 aa		28.57	■■■□□ 2.16
TRA2A-204	ENST00000474586	WWC3	Q9ULE0	1092 aa		28.56	■■■□□ 2.16
TRA2A-204	ENST00000474586	TJP1	Q07157	1748 aa		28.55	■■■□□ 2.16
TRA2A-204	ENST00000474586	GOLGB1	Q14789	3259 aa	Known RBP	28.55	■■■□□ 2.16
TRA2A-204	ENST00000474586	SLC39A6	Q13433	755 aa		28.55	■■■□□ 2.16
TRA2A-204	ENST00000474586	GYS1	P13807	737 aa		28.54	■■■□□ 2.16
TRA2A-204	ENST00000474586	VIRMA	Q69YN4	1812 aa	Known RBP	28.54	■■■□□ 2.16
TRA2A-204	ENST00000474586	MRC1	P22897	1456 aa		28.53	■■■□□ 2.16
TRA2A-204	ENST00000474586	INTS5	Q6P9B9	1019 aa	Known RBP	28.52	■■■□□ 2.16
TRA2A-204	ENST00000474586	DNAJC10	Q8IXB1	793 aa		28.52	■■■□□ 2.16
TRA2A-204	ENST00000474586	CIC	Q96RK0	1608 aa	Predicted RBP	28.51	■■■□□ 2.15
TRA2A-204	ENST00000474586	C4A	P0C0L4	1744 aa		28.5	■■■□□ 2.15
TRA2A-204	ENST00000474586	SRP68	Q9UHB9	627 aa	Known RBP	28.5	■■■□□ 2.15
TRA2A-204	ENST00000474586	ADAMTS7	Q9UKP4	1686 aa		28.5	■■■□□ 2.15
TRA2A-204	ENST00000474586	CFAP53	Q96M91	514 aa		28.48	■■■□□ 2.15
TRA2A-204	ENST00000474586	CCDC87	Q9NVE4	849 aa		28.47	■■■□□ 2.15
TRA2A-204	ENST00000474586	GAS2L2	Q8NHY3	880 aa		28.46	■■■□□ 2.15
TRA2A-204	ENST00000474586	PARP3	Q9Y6F1	533 aa		28.46	■■■□□ 2.15
TRA2A-204	ENST00000474586	KCP	Q6ZWJ8	1503 aa		28.46	■■■□□ 2.15
TRA2A-204	ENST00000474586	USP42	Q9H9J4	1324 aa	Known RBP	28.45	■■■□□ 2.15
TRA2A-204	ENST00000474586	CYP19A1	P11511	503 aa	Predicted RBP	28.45	■■■□□ 2.14
TRA2A-204	ENST00000474586	PPP2R1A	P30153	589 aa		28.45	■■■□□ 2.14
TRA2A-204	ENST00000474586	IL17RE	Q8NFR9	667 aa		28.45	■■■□□ 2.14
TRA2A-204	ENST00000474586	KIF13B	Q9NQT8	1826 aa		28.45	■■■□□ 2.14
TRA2A-204	ENST00000474586	GNAT3	A8MTJ3	354 aa		28.44	■■■□□ 2.14
TRA2A-204	ENST00000474586	FKBP8	Q14318	412 aa		28.44	■■■□□ 2.14
TRA2A-204	ENST00000474586	PXDNL	A1KZ92	1463 aa		28.44	■■■□□ 2.14
TRA2A-204	ENST00000474586	C10orf71	Q711Q0	1435 aa		28.43	■■■□□ 2.14
TRA2A-204	ENST00000474586	TGFB2	P61812	414 aa		28.43	■■■□□ 2.14
TRA2A-204	ENST00000474586		A0A0G2JLW4	131 aa		28.42	■■■□□ 2.14
TRA2A-204	ENST00000474586	PHACTR3	Q96KR7	559 aa		28.42	■■■□□ 2.14
TRA2A-204	ENST00000474586	N4BP2	Q86UW6	1770 aa	Predicted RBP	28.42	■■■□□ 2.14
TRA2A-204	ENST00000474586	SOS1	Q07889	1333 aa	Predicted RBP	28.42	■■■□□ 2.14
TRA2A-204	ENST00000474586	KIAA1551	Q9HCM1	1747 aa		28.41	■■■□□ 2.14
TRA2A-204	ENST00000474586	PRKAR2B	P31323	418 aa		28.41	■■■□□ 2.14
TRA2A-204	ENST00000474586	TEF	Q10587	303 aa		28.41	■■■□□ 2.14
TRA2A-204	ENST00000474586	RSPH6A	Q9H0K4	717 aa		28.41	■■■□□ 2.14
TRA2A-204	ENST00000474586	TTC5	Q8N0Z6	440 aa		28.4	■■■□□ 2.14
TRA2A-204	ENST00000474586	VSIG10	Q8N0Z9	540 aa		28.4	■■■□□ 2.14
TRA2A-204	ENST00000474586	NUDC	Q9Y266	331 aa		28.4	■■■□□ 2.14
TRA2A-204	ENST00000474586	ZPR1	O75312	459 aa		28.39	■■■□□ 2.14
TRA2A-204	ENST00000474586	DDR1	Q08345	913 aa		28.39	■■■□□ 2.14
TRA2A-204	ENST00000474586	USPL1	Q5W0Q7	1092 aa		28.39	■■■□□ 2.14
TRA2A-204	ENST00000474586	ZBTB1	Q9Y2K1	713 aa		28.39	■■■□□ 2.14
TRA2A-204	ENST00000474586	UBR2	Q8IWV8	1755 aa		28.38	■■■□□ 2.13
TRA2A-204	ENST00000474586	DPEP1	P16444	411 aa		28.38	■■■□□ 2.13
TRA2A-204	ENST00000474586	C1QTNF8	P60827	252 aa		28.38	■■■□□ 2.13
TRA2A-204	ENST00000474586	ATP10D	Q9P241	1426 aa		28.37	■■■□□ 2.13
TRA2A-204	ENST00000474586	GIGYF1	O75420	1035 aa	Predicted RBP	28.37	■■■□□ 2.13
TRA2A-204	ENST00000474586	U2AF1L5	P0DN76	240 aa	Predicted RBP	28.37	■■■□□ 2.13
TRA2A-204	ENST00000474586	U2AF1	Q01081	240 aa	Known RBP eCLIP	28.37	■■■□□ 2.13	1e-7	■■■□□ 15.2

Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms