RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 CHD4Q14839 1912 aa27.63■■■□□ 2.01
PDLIM4-206ENST00000474421 SSFA2P28290 1259 aa27.62■■■□□ 2.01
PDLIM4-206ENST00000474421 LINC00116Q8NCU8 138 aa27.62■■■□□ 2.01
PDLIM4-206ENST00000474421 GPR162Q16538 588 aa27.61■■■□□ 2.01
PDLIM4-206ENST00000474421 MSL1Q68DK7 614 aa27.61■■■□□ 2.01
PDLIM4-206ENST00000474421 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.6■■■□□ 2.01
PDLIM4-206ENST00000474421 CABP4P57796 275 aa27.6■■■□□ 2.01
PDLIM4-206ENST00000474421 CC2D1BQ5T0F9 858 aaKnown RBP27.6■■■□□ 2.01
PDLIM4-206ENST00000474421 NPC1L1Q9UHC9 1359 aa27.6■■■□□ 2.01
PDLIM4-206ENST00000474421 KDM6AO15550 1401 aaPredicted RBP27.59■■■□□ 2.01
PDLIM4-206ENST00000474421 ZNF831Q5JPB2 1677 aa27.59■■■□□ 2.01
PDLIM4-206ENST00000474421 PHF14O94880 888 aa27.59■■■□□ 2.01
PDLIM4-206ENST00000474421 ITPK1Q13572 414 aa27.59■■■□□ 2.01
PDLIM4-206ENST00000474421 GNPATO15228 680 aa27.56■■■□□ 2
PDLIM4-206ENST00000474421 RBM42Q9BTD8 480 aaKnown RBP27.56■■■□□ 2
PDLIM4-206ENST00000474421 AMIGO3Q86WK7 504 aa27.55■■■□□ 2
PDLIM4-206ENST00000474421 NLGN2Q8NFZ4 835 aa27.55■■■□□ 2
PDLIM4-206ENST00000474421 CD2APQ9Y5K6 639 aa27.55■■■□□ 2
PDLIM4-206ENST00000474421 DIAPH1O60610 1272 aaKnown RBP27.54■■■□□ 2
PDLIM4-206ENST00000474421 AKAP4Q5JQC9 854 aa27.53■■■□□ 2
PDLIM4-206ENST00000474421 SCN11AQ9UI33 1791 aa27.53■■■□□ 2
PDLIM4-206ENST00000474421 GOLGB1Q14789 3259 aaKnown RBP27.52■■■□□ 2
PDLIM4-206ENST00000474421 PELP1Q8IZL8 1130 aaKnown RBP27.52■■■□□ 2
PDLIM4-206ENST00000474421 RC3H1Q5TC82 1133 aaKnown RBP27.51■■□□□ 1.99
PDLIM4-206ENST00000474421 NFATC2IPQ8NCF5 419 aa27.51■■□□□ 1.99
PDLIM4-206ENST00000474421 RTCBQ9Y3I0 505 aaKnown RBP27.51■■□□□ 1.99
PDLIM4-206ENST00000474421 SMIM5Q71RC9 77 aa27.5■■□□□ 1.99
PDLIM4-206ENST00000474421 SLC4A9Q96Q91 983 aa27.5■■□□□ 1.99
PDLIM4-206ENST00000474421 COL5A3P25940 1745 aaPredicted RBP27.5■■□□□ 1.99
PDLIM4-206ENST00000474421 CNTNAP4Q9C0A0 1308 aa27.49■■□□□ 1.99
PDLIM4-206ENST00000474421 HMOX1P09601 288 aa27.49■■□□□ 1.99
PDLIM4-206ENST00000474421 TRAPPC3LQ5T215 181 aa27.49■■□□□ 1.99
PDLIM4-206ENST00000474421 GRIN3BO60391 1043 aa27.48■■□□□ 1.99
PDLIM4-206ENST00000474421 ADRA2BP18089 450 aa27.48■■□□□ 1.99
PDLIM4-206ENST00000474421 PTCD1O75127 700 aaKnown RBP27.46■■□□□ 1.99
PDLIM4-206ENST00000474421 ZNF784Q8NCA9 323 aaPredicted RBP27.45■■□□□ 1.98
PDLIM4-206ENST00000474421 CNGB1Q14028 1251 aaPredicted RBP27.44■■□□□ 1.98
PDLIM4-206ENST00000474421 SLC52A2Q9HAB3 445 aa27.44■■□□□ 1.98
PDLIM4-206ENST00000474421 RPS6KA4O75676 772 aa27.43■■□□□ 1.98
PDLIM4-206ENST00000474421 VIRMAQ69YN4 1812 aaKnown RBP27.43■■□□□ 1.98
PDLIM4-206ENST00000474421 NLGN1Q8N2Q7 840 aa27.42■■□□□ 1.98
PDLIM4-206ENST00000474421 COL3A1P02461 1466 aaPredicted RBP27.42■■□□□ 1.98
PDLIM4-206ENST00000474421 MYH14Q7Z406 1995 aaKnown RBP27.42■■□□□ 1.98
PDLIM4-206ENST00000474421 CICQ96RK0 1608 aaPredicted RBP27.41■■□□□ 1.98
PDLIM4-206ENST00000474421 MRC1P22897 1456 aa27.41■■□□□ 1.98
PDLIM4-206ENST00000474421 RNMTO43148 476 aaKnown RBP27.41■■□□□ 1.98
PDLIM4-206ENST00000474421 YBX3P16989 372 aaKnown RBP eCLIP27.41■■□□□ 1.982e-6■■■□□ 15.1
PDLIM4-206ENST00000474421 RFC4P35249 363 aa27.41■■□□□ 1.98
PDLIM4-206ENST00000474421 MTHFSDQ2M296 383 aaKnown RBP27.41■■□□□ 1.98
PDLIM4-206ENST00000474421 LGR6Q9HBX8 967 aa27.41■■□□□ 1.98
PDLIM4-206ENST00000474421 U2SURPO15042 1029 aaKnown RBP27.4■■□□□ 1.98
PDLIM4-206ENST00000474421 ARHGEF1Q92888 912 aaKnown RBP27.4■■□□□ 1.98
PDLIM4-206ENST00000474421 MMP10P09238 476 aa27.39■■□□□ 1.98
PDLIM4-206ENST00000474421 CFAP53Q96M91 514 aa27.39■■□□□ 1.98
PDLIM4-206ENST00000474421 CRKLP46109 303 aaKnown RBP27.38■■□□□ 1.97
PDLIM4-206ENST00000474421 ADAMTS7Q9UKP4 1686 aa27.37■■□□□ 1.97
PDLIM4-206ENST00000474421 TJP1Q07157 1748 aa27.37■■□□□ 1.97
PDLIM4-206ENST00000474421 GAS2L2Q8NHY3 880 aa27.35■■□□□ 1.97
PDLIM4-206ENST00000474421 C4AP0C0L4 1744 aa27.34■■□□□ 1.97
PDLIM4-206ENST00000474421 GYS1P13807 737 aa27.34■■□□□ 1.97
PDLIM4-206ENST00000474421 NUDCQ9Y266 331 aa27.32■■□□□ 1.96
PDLIM4-206ENST00000474421 KIF13BQ9NQT8 1826 aa27.32■■□□□ 1.96
PDLIM4-206ENST00000474421 SLC39A6Q13433 755 aa27.31■■□□□ 1.96
PDLIM4-206ENST00000474421 DNAJC10Q8IXB1 793 aa27.31■■□□□ 1.96
PDLIM4-206ENST00000474421 GNAT3A8MTJ3 354 aa27.3■■□□□ 1.96
PDLIM4-206ENST00000474421 INTS5Q6P9B9 1019 aaKnown RBP27.3■■□□□ 1.96
PDLIM4-206ENST00000474421 VSIG10Q8N0Z9 540 aa27.3■■□□□ 1.96
PDLIM4-206ENST00000474421 CCDC87Q9NVE4 849 aa27.3■■□□□ 1.96
PDLIM4-206ENST00000474421 PARP3Q9Y6F1 533 aa27.3■■□□□ 1.96
PDLIM4-206ENST00000474421 TGFB2P61812 414 aa27.29■■□□□ 1.96
PDLIM4-206ENST00000474421 KCPQ6ZWJ8 1503 aa27.28■■□□□ 1.96
PDLIM4-206ENST00000474421 USP42Q9H9J4 1324 aaKnown RBP27.28■■□□□ 1.96
PDLIM4-206ENST00000474421 TEFQ10587 303 aa27.28■■□□□ 1.96
PDLIM4-206ENST00000474421 PPP2R1AP30153 589 aa27.27■■□□□ 1.96
PDLIM4-206ENST00000474421 TTC5Q8N0Z6 440 aa27.27■■□□□ 1.96
PDLIM4-206ENST00000474421 C10orf71Q711Q0 1435 aa27.26■■□□□ 1.95
PDLIM4-206ENST00000474421 CYP19A1P11511 503 aaPredicted RBP27.26■■□□□ 1.95
PDLIM4-206ENST00000474421 UBR2Q8IWV8 1755 aa27.26■■□□□ 1.95
PDLIM4-206ENST00000474421 SOS1Q07889 1333 aaPredicted RBP27.24■■□□□ 1.95
PDLIM4-206ENST00000474421 ZPR1O75312 459 aa27.24■■□□□ 1.95
PDLIM4-206ENST00000474421 PRKAR2BP31323 418 aa27.24■■□□□ 1.95
PDLIM4-206ENST00000474421 IL17REQ8NFR9 667 aa27.24■■□□□ 1.95
PDLIM4-206ENST00000474421 RSPH6AQ9H0K4 717 aa27.24■■□□□ 1.95
PDLIM4-206ENST00000474421 SRP68Q9UHB9 627 aaKnown RBP27.24■■□□□ 1.95
PDLIM4-206ENST00000474421 PXDNLA1KZ92 1463 aa27.24■■□□□ 1.95
PDLIM4-206ENST00000474421 U2AF1L5P0DN76 240 aaPredicted RBP27.22■■□□□ 1.95
PDLIM4-206ENST00000474421 U2AF1Q01081 240 aaKnown RBP eCLIP27.22■■□□□ 1.95
PDLIM4-206ENST00000474421 FKBP8Q14318 412 aa27.22■■□□□ 1.95
PDLIM4-206ENST00000474421 STARD3NLO95772 234 aa27.21■■□□□ 1.95
PDLIM4-206ENST00000474421 WWC3Q9ULE0 1092 aa27.21■■□□□ 1.95
PDLIM4-206ENST00000474421 SIPA1L3O60292 1781 aaPredicted RBP27.21■■□□□ 1.95
PDLIM4-206ENST00000474421 N4BP2Q86UW6 1770 aaPredicted RBP27.21■■□□□ 1.95
PDLIM4-206ENST00000474421 KIAA1551Q9HCM1 1747 aa27.21■■□□□ 1.95
PDLIM4-206ENST00000474421 FCHSD2O94868 740 aa27.2■■□□□ 1.94
PDLIM4-206ENST00000474421 ZNF790Q6PG37 636 aa27.2■■□□□ 1.94
PDLIM4-206ENST00000474421 PHACTR3Q96KR7 559 aa27.2■■□□□ 1.94
PDLIM4-206ENST00000474421 TEX13AQ9BXU3 409 aaPredicted RBP27.2■■□□□ 1.94
PDLIM4-206ENST00000474421 ZBTB1Q9Y2K1 713 aa27.19■■□□□ 1.94
PDLIM4-206ENST00000474421 COL15A1P39059 1388 aa27.19■■□□□ 1.94
PDLIM4-206ENST00000474421 CEMIPQ8WUJ3 1361 aa27.19■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms