RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 NOB1Q9ULX3 412 aaKnown RBP12.01□□□□□ -0.49
VPS52-216ENST00000471309 PCDH11XQ9BZA7 1347 aa12.01□□□□□ -0.49
VPS52-216ENST00000471309 PCDH11YQ9BZA8 1340 aa12.01□□□□□ -0.49
VPS52-216ENST00000471309 DISP2A7MBM2 1401 aa12.01□□□□□ -0.49
VPS52-216ENST00000471309 HSP90AB1P08238 724 aaKnown RBP12□□□□□ -0.49
VPS52-216ENST00000471309 RLBP1P12271 317 aa12□□□□□ -0.49
VPS52-216ENST00000471309 IL2RBP14784 551 aa12□□□□□ -0.49
VPS52-216ENST00000471309 EVA1CP58658 441 aa12□□□□□ -0.49
VPS52-216ENST00000471309 KRT24Q2M2I5 525 aa12□□□□□ -0.49
VPS52-216ENST00000471309 FTSJ3Q8IY81 847 aaKnown RBP12□□□□□ -0.49
VPS52-216ENST00000471309 DZIP1LQ8IYY4 767 aaKnown RBP12□□□□□ -0.49
VPS52-216ENST00000471309 JCADQ9P266 1359 aa12□□□□□ -0.49
VPS52-216ENST00000471309 PAPPAQ13219 1627 aa12□□□□□ -0.49
VPS52-216ENST00000471309 N4BP2Q86UW6 1770 aaPredicted RBP12□□□□□ -0.49
VPS52-216ENST00000471309 CYP27B1O15528 508 aa11.99□□□□□ -0.49
VPS52-216ENST00000471309 HOXB7P09629 217 aa11.99□□□□□ -0.49
VPS52-216ENST00000471309 MVPQ14764 893 aaKnown RBP11.99□□□□□ -0.49
VPS52-216ENST00000471309 DCAF5Q96JK2 942 aa11.99□□□□□ -0.49
VPS52-216ENST00000471309 TNNQ9UQP3 1299 aa11.99□□□□□ -0.49
VPS52-216ENST00000471309 COG6Q9Y2V7 657 aa11.99□□□□□ -0.49
VPS52-216ENST00000471309 SLIT2O94813 1529 aa11.99□□□□□ -0.49
VPS52-216ENST00000471309 CACNA1FO60840 1977 aa11.98□□□□□ -0.49
VPS52-216ENST00000471309 TOGARAM1Q9Y4F4 1720 aa11.98□□□□□ -0.49
VPS52-216ENST00000471309 LRP6O75581 1613 aa11.98□□□□□ -0.49
VPS52-216ENST00000471309 RGS12O14924 1447 aa11.98□□□□□ -0.49
VPS52-216ENST00000471309 ABCC4O15439 1325 aa11.98□□□□□ -0.49
VPS52-216ENST00000471309 BTBD11A6QL63 1104 aa11.98□□□□□ -0.49
VPS52-216ENST00000471309 CLUAP1Q96AJ1 413 aa11.98□□□□□ -0.49
VPS52-216ENST00000471309 HEG1Q9ULI3 1381 aa11.97□□□□□ -0.49
VPS52-216ENST00000471309 EIF4A1P60842 406 aaKnown RBP11.97□□□□□ -0.49
VPS52-216ENST00000471309 ZCRB1Q8TBF4 217 aaKnown RBP11.97□□□□□ -0.49
VPS52-216ENST00000471309 API5Q9BZZ5 524 aaKnown RBP11.97□□□□□ -0.49
VPS52-216ENST00000471309 LAMB4A4D0S4 1761 aa11.97□□□□□ -0.49
VPS52-216ENST00000471309 UBR2Q8IWV8 1755 aa11.97□□□□□ -0.49
VPS52-216ENST00000471309 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.97□□□□□ -0.49
VPS52-216ENST00000471309 C5P01031 1676 aa11.97□□□□□ -0.49
VPS52-216ENST00000471309 GLI3P10071 1580 aa11.96□□□□□ -0.49
VPS52-216ENST00000471309 PTPRCP08575 1304 aa11.96□□□□□ -0.49
VPS52-216ENST00000471309 CHMP4AQ9BY43 222 aa11.96□□□□□ -0.49
VPS52-216ENST00000471309 SLC52A2Q9HAB3 445 aa11.96□□□□□ -0.49
VPS52-216ENST00000471309 DDX19BQ9UMR2 479 aa11.96□□□□□ -0.49
VPS52-216ENST00000471309 TNS2Q63HR2 1409 aa11.95□□□□□ -0.5
VPS52-216ENST00000471309 SPATA31A6Q5VVP1 1343 aa11.95□□□□□ -0.5
VPS52-216ENST00000471309 KDM2BQ8NHM5 1336 aa11.95□□□□□ -0.5
VPS52-216ENST00000471309 TCERG1O14776 1098 aaKnown RBP11.95□□□□□ -0.5
VPS52-216ENST00000471309 ADAMTS2O95450 1211 aa11.95□□□□□ -0.5
VPS52-216ENST00000471309 NKX1-1Q15270 411 aaPredicted RBP11.95□□□□□ -0.5
VPS52-216ENST00000471309 CCDC30Q5VVM6 783 aa11.95□□□□□ -0.5
VPS52-216ENST00000471309 TMEM57Q8N5G2 664 aa11.95□□□□□ -0.5
VPS52-216ENST00000471309 STK31Q9BXU1 1019 aa11.95□□□□□ -0.5
VPS52-216ENST00000471309 PXDNLA1KZ92 1463 aa11.95□□□□□ -0.5
VPS52-216ENST00000471309 CENPQQ7L2Z9 268 aaPredicted RBP11.94□□□□□ -0.5
VPS52-216ENST00000471309 ITPRIPQ8IWB1 547 aa11.94□□□□□ -0.5
VPS52-216ENST00000471309 HDGFL1Q5TGJ6 251 aa11.93□□□□□ -0.5
VPS52-216ENST00000471309 CDCA7Q9BWT1 371 aaPredicted RBP11.93□□□□□ -0.5
VPS52-216ENST00000471309 CHMP4BQ9H444 224 aaKnown RBP11.93□□□□□ -0.5
VPS52-216ENST00000471309 THRAP3Q9Y2W1 955 aaKnown RBP11.93□□□□□ -0.5
VPS52-216ENST00000471309 SPATA31A1Q5TZJ5 1347 aa11.92□□□□□ -0.5
VPS52-216ENST00000471309 NUTM2BA6NNL0 878 aaPredicted RBP11.92□□□□□ -0.5
VPS52-216ENST00000471309 NUTM2EB1AL46 878 aaPredicted RBP11.92□□□□□ -0.5
VPS52-216ENST00000471309 ERVV-2B6SEH9 535 aa11.92□□□□□ -0.5
VPS52-216ENST00000471309 KCNQ3O43525 872 aa11.92□□□□□ -0.5
VPS52-216ENST00000471309 SLC4A2P04920 1241 aa11.92□□□□□ -0.5
VPS52-216ENST00000471309 ZNF790Q6PG37 636 aa11.92□□□□□ -0.5
VPS52-216ENST00000471309 NUTM2AQ8IVF1 878 aaPredicted RBP11.92□□□□□ -0.5
VPS52-216ENST00000471309 USP35Q9P2H5 1018 aa11.92□□□□□ -0.5
VPS52-216ENST00000471309 CABP4P57796 275 aa11.91□□□□□ -0.5
VPS52-216ENST00000471309 NFATC2IPQ8NCF5 419 aa11.91□□□□□ -0.5
VPS52-216ENST00000471309 DOT1LQ8TEK3 1739 aa11.91□□□□□ -0.5
VPS52-216ENST00000471309 KCPQ6ZWJ8 1503 aa11.91□□□□□ -0.5
VPS52-216ENST00000471309 SPATA31A5Q5VU36 1347 aa11.9□□□□□ -0.5
VPS52-216ENST00000471309 SPATA31A7Q8IWB4 1347 aa11.9□□□□□ -0.5
VPS52-216ENST00000471309 BCL9LQ86UU0 1499 aa11.9□□□□□ -0.5
VPS52-216ENST00000471309 GIGYF1O75420 1035 aaPredicted RBP11.9□□□□□ -0.5
VPS52-216ENST00000471309 FLIIQ13045 1269 aa11.9□□□□□ -0.5
VPS52-216ENST00000471309 INTS3Q68E01 1043 aaKnown RBP11.9□□□□□ -0.5
VPS52-216ENST00000471309 ZBTB40Q9NUA8 1239 aa11.9□□□□□ -0.5
VPS52-216ENST00000471309 ITGB4P16144 1822 aa11.9□□□□□ -0.5
VPS52-216ENST00000471309 G2E3Q7L622 706 aa11.89□□□□□ -0.51
VPS52-216ENST00000471309 TTC5Q8N0Z6 440 aa11.89□□□□□ -0.51
VPS52-216ENST00000471309 ZBTB7BO15156 539 aaPredicted RBP11.88□□□□□ -0.51
VPS52-216ENST00000471309 BARGINQ6ZT62 677 aa11.88□□□□□ -0.51
VPS52-216ENST00000471309 DDX54Q8TDD1 881 aaKnown RBP11.88□□□□□ -0.51
VPS52-216ENST00000471309 CHPF2Q9P2E5 772 aa11.88□□□□□ -0.51
VPS52-216ENST00000471309 DBF4Q9UBU7 674 aaPredicted RBP11.88□□□□□ -0.51
VPS52-216ENST00000471309 PCDHB15Q9Y5E8 787 aa11.88□□□□□ -0.51
VPS52-216ENST00000471309 THSD7AQ9UPZ6 1657 aa11.87□□□□□ -0.51
VPS52-216ENST00000471309 CCT4P50991 539 aaKnown RBP11.87□□□□□ -0.51
VPS52-216ENST00000471309 SLC39A6Q13433 755 aa11.87□□□□□ -0.51
VPS52-216ENST00000471309 UNC5CLQ8IV45 518 aa11.87□□□□□ -0.51
VPS52-216ENST00000471309 FNBP4Q8N3X1 1017 aaPredicted RBP11.87□□□□□ -0.51
VPS52-216ENST00000471309 NECTIN2Q92692 538 aa11.87□□□□□ -0.51
VPS52-216ENST00000471309 ZNF496Q96IT1 587 aaPredicted RBP11.87□□□□□ -0.51
VPS52-216ENST00000471309 FMNL2Q96PY5 1086 aa11.87□□□□□ -0.51
VPS52-216ENST00000471309 EXOC5O00471 708 aa11.86□□□□□ -0.51
VPS52-216ENST00000471309 IGHDP01880 384 aa11.86□□□□□ -0.51
VPS52-216ENST00000471309 SNRPA1P09661 255 aaKnown RBP11.86□□□□□ -0.51
VPS52-216ENST00000471309 EIF2S2P20042 333 aaKnown RBP11.86□□□□□ -0.51
VPS52-216ENST00000471309 HSPA1LP34931 641 aa11.86□□□□□ -0.51
VPS52-216ENST00000471309 FKBP5Q13451 457 aaPredicted RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms