RNA–Protein interactions for RNA: ENST00000471250.5

U2AF1-208, Transcript of U2 small nuclear RNA auxiliary factor 1, human

TSL 2

Gene U2AF1, Length 1,676 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
U2AF1-208	ENST00000471250	EIF4A1	P60842	406 aa	Known RBP	33.09	■■■□□ 2.89
U2AF1-208	ENST00000471250	TMEM57	Q8N5G2	664 aa		33.08	■■■□□ 2.89
U2AF1-208	ENST00000471250	API5	Q9BZZ5	524 aa	Known RBP	33.08	■■■□□ 2.89
U2AF1-208	ENST00000471250	ZCRB1	Q8TBF4	217 aa	Known RBP	33.07	■■■□□ 2.89
U2AF1-208	ENST00000471250	DCAF5	Q96JK2	942 aa		33.07	■■■□□ 2.89
U2AF1-208	ENST00000471250	DDX19B	Q9UMR2	479 aa		33.07	■■■□□ 2.88
U2AF1-208	ENST00000471250	ITPRIP	Q8IWB1	547 aa		33.05	■■■□□ 2.88
U2AF1-208	ENST00000471250	CERK	Q8TCT0	537 aa		33.05	■■■□□ 2.88
U2AF1-208	ENST00000471250	PLCH1	Q4KWH8	1693 aa		33.05	■■■□□ 2.88
U2AF1-208	ENST00000471250	ABCC4	O15439	1325 aa		33.05	■■■□□ 2.88
U2AF1-208	ENST00000471250	KDM2B	Q8NHM5	1336 aa		33.05	■■■□□ 2.88
U2AF1-208	ENST00000471250	PCDH11X	Q9BZA7	1347 aa		33.05	■■■□□ 2.88
U2AF1-208	ENST00000471250	PCDH11Y	Q9BZA8	1340 aa		33.05	■■■□□ 2.88
U2AF1-208	ENST00000471250	MRC1	P22897	1456 aa		33.04	■■■□□ 2.88
U2AF1-208	ENST00000471250	KCNQ3	O43525	872 aa		33.04	■■■□□ 2.88
U2AF1-208	ENST00000471250	CCDC30	Q5VVM6	783 aa		33.04	■■■□□ 2.88
U2AF1-208	ENST00000471250	SLC52A2	Q9HAB3	445 aa		33.04	■■■□□ 2.88
U2AF1-208	ENST00000471250	HOXB7	P09629	217 aa		33.04	■■■□□ 2.88
U2AF1-208	ENST00000471250	SLC4A2	P04920	1241 aa		33.03	■■■□□ 2.88
U2AF1-208	ENST00000471250	PTPRC	P08575	1304 aa		33.03	■■■□□ 2.88
U2AF1-208	ENST00000471250	CENPQ	Q7L2Z9	268 aa	Predicted RBP	33.02	■■■□□ 2.88
U2AF1-208	ENST00000471250	SHANK3	Q9BYB0	1731 aa		33.02	■■■□□ 2.88
U2AF1-208	ENST00000471250	CACNA1F	O60840	1977 aa		33.02	■■■□□ 2.88
U2AF1-208	ENST00000471250	STK31	Q9BXU1	1019 aa		33.01	■■■□□ 2.88
U2AF1-208	ENST00000471250	ADAMTS2	O95450	1211 aa		33.01	■■■□□ 2.87
U2AF1-208	ENST00000471250	NRAP	Q86VF7	1730 aa		32.99	■■■□□ 2.87
U2AF1-208	ENST00000471250	RGS12	O14924	1447 aa		32.98	■■■□□ 2.87
U2AF1-208	ENST00000471250	HEG1	Q9ULI3	1381 aa		32.98	■■■□□ 2.87
U2AF1-208	ENST00000471250	CHMP4A	Q9BY43	222 aa		32.98	■■■□□ 2.87
U2AF1-208	ENST00000471250	NKX1-1	Q15270	411 aa	Predicted RBP	32.97	■■■□□ 2.87
U2AF1-208	ENST00000471250	NUTM2B	A6NNL0	878 aa	Predicted RBP	32.97	■■■□□ 2.87
U2AF1-208	ENST00000471250	NUTM2E	B1AL46	878 aa	Predicted RBP	32.97	■■■□□ 2.87
U2AF1-208	ENST00000471250	NUTM2A	Q8IVF1	878 aa	Predicted RBP	32.97	■■■□□ 2.87
U2AF1-208	ENST00000471250	USP35	Q9P2H5	1018 aa		32.97	■■■□□ 2.87
U2AF1-208	ENST00000471250	DISP2	A7MBM2	1401 aa		32.96	■■■□□ 2.87
U2AF1-208	ENST00000471250	HDGFL1	Q5TGJ6	251 aa		32.96	■■■□□ 2.87
U2AF1-208	ENST00000471250	NFATC2IP	Q8NCF5	419 aa		32.96	■■■□□ 2.87
U2AF1-208	ENST00000471250	PCDHB15	Q9Y5E8	787 aa		32.95	■■■□□ 2.87
U2AF1-208	ENST00000471250	JCAD	Q9P266	1359 aa		32.95	■■■□□ 2.87
U2AF1-208	ENST00000471250	G2E3	Q7L622	706 aa		32.94	■■■□□ 2.86
U2AF1-208	ENST00000471250	CHMP4B	Q9H444	224 aa	Known RBP	32.94	■■■□□ 2.86
U2AF1-208	ENST00000471250	ZBTB40	Q9NUA8	1239 aa		32.94	■■■□□ 2.86
U2AF1-208	ENST00000471250	NWD2	Q9ULI1	1742 aa		32.94	■■■□□ 2.86
U2AF1-208	ENST00000471250	IGHD	P01880	384 aa		32.92	■■■□□ 2.86
U2AF1-208	ENST00000471250	ZNF790	Q6PG37	636 aa		32.92	■■■□□ 2.86
U2AF1-208	ENST00000471250	NECTIN2	Q92692	538 aa		32.92	■■■□□ 2.86
U2AF1-208	ENST00000471250	WNK3	Q9BYP7	1800 aa		32.92	■■■□□ 2.86
U2AF1-208	ENST00000471250	GIGYF1	O75420	1035 aa	Predicted RBP	32.91	■■■□□ 2.86
U2AF1-208	ENST00000471250	CABP4	P57796	275 aa		32.91	■■■□□ 2.86
U2AF1-208	ENST00000471250	INTS3	Q68E01	1043 aa	Known RBP	32.91	■■■□□ 2.86
U2AF1-208	ENST00000471250	ZBTB7B	O15156	539 aa	Predicted RBP	32.91	■■■□□ 2.86
U2AF1-208	ENST00000471250	DDX54	Q8TDD1	881 aa	Known RBP	32.9	■■■□□ 2.86
U2AF1-208	ENST00000471250	SLIT2	O94813	1529 aa		32.9	■■■□□ 2.86
U2AF1-208	ENST00000471250	ERVV-2	B6SEH9	535 aa		32.89	■■■□□ 2.86
U2AF1-208	ENST00000471250	EIF2S2	P20042	333 aa	Known RBP	32.88	■■■□□ 2.85
U2AF1-208	ENST00000471250	SLC39A6	Q13433	755 aa		32.88	■■■□□ 2.85
U2AF1-208	ENST00000471250	FLII	Q13045	1269 aa		32.88	■■■□□ 2.85
U2AF1-208	ENST00000471250	RWDD1	Q9H446	243 aa	Predicted RBP	32.85	■■■□□ 2.85
U2AF1-208	ENST00000471250	THRAP3	Q9Y2W1	955 aa	Known RBP	32.85	■■■□□ 2.85
U2AF1-208	ENST00000471250	SPATA31A1	Q5TZJ5	1347 aa		32.85	■■■□□ 2.85
U2AF1-208	ENST00000471250	TTC5	Q8N0Z6	440 aa		32.82	■■■□□ 2.84
U2AF1-208	ENST00000471250	CDCA7	Q9BWT1	371 aa	Predicted RBP	32.82	■■■□□ 2.84
U2AF1-208	ENST00000471250	TSHZ2	Q9NRE2	1034 aa		32.82	■■■□□ 2.84
U2AF1-208	ENST00000471250	CHPF2	Q9P2E5	772 aa		32.82	■■■□□ 2.84
U2AF1-208	ENST00000471250	FKBP5	Q13451	457 aa	Predicted RBP	32.81	■■■□□ 2.84
U2AF1-208	ENST00000471250	C5	P01031	1676 aa		32.81	■■■□□ 2.84
U2AF1-208	ENST00000471250	TOGARAM1	Q9Y4F4	1720 aa		32.81	■■■□□ 2.84
U2AF1-208	ENST00000471250	SPATA31A6	Q5VVP1	1343 aa		32.8	■■■□□ 2.84
U2AF1-208	ENST00000471250	PRAMEF22	A3QJZ6	481 aa		32.8	■■■□□ 2.84
U2AF1-208	ENST00000471250	HDAC1	Q13547	482 aa	Predicted RBP	32.8	■■■□□ 2.84
U2AF1-208	ENST00000471250	ZNF496	Q96IT1	587 aa	Predicted RBP	32.8	■■■□□ 2.84
U2AF1-208	ENST00000471250	DBF4	Q9UBU7	674 aa	Predicted RBP	32.8	■■■□□ 2.84
U2AF1-208	ENST00000471250	SPATA31A5	Q5VU36	1347 aa		32.79	■■■□□ 2.84
U2AF1-208	ENST00000471250	SPATA31A7	Q8IWB4	1347 aa		32.79	■■■□□ 2.84
U2AF1-208	ENST00000471250	EXOC5	O00471	708 aa		32.79	■■■□□ 2.84
U2AF1-208	ENST00000471250	PHAX	Q9H814	394 aa	Known RBP	32.79	■■■□□ 2.84
U2AF1-208	ENST00000471250		F6X3S4	739 aa		32.78	■■■□□ 2.84
U2AF1-208	ENST00000471250	CCT4	P50991	539 aa	Known RBP	32.78	■■■□□ 2.84
U2AF1-208	ENST00000471250	FMNL2	Q96PY5	1086 aa		32.78	■■■□□ 2.84
U2AF1-208	ENST00000471250	PAPPA	Q13219	1627 aa		32.78	■■■□□ 2.84
U2AF1-208	ENST00000471250	TNS2	Q63HR2	1409 aa		32.77	■■■□□ 2.84
U2AF1-208	ENST00000471250	N4BP2	Q86UW6	1770 aa	Predicted RBP	32.76	■■■□□ 2.84
U2AF1-208	ENST00000471250	PXDNL	A1KZ92	1463 aa		32.76	■■■□□ 2.84
U2AF1-208	ENST00000471250	UBR2	Q8IWV8	1755 aa		32.76	■■■□□ 2.83
U2AF1-208	ENST00000471250	SNRPA1	P09661	255 aa	Known RBP	32.75	■■■□□ 2.83
U2AF1-208	ENST00000471250	UNC5CL	Q8IV45	518 aa		32.75	■■■□□ 2.83
U2AF1-208	ENST00000471250	SLC4A10	Q6U841	1118 aa		32.75	■■■□□ 2.83
U2AF1-208	ENST00000471250	GLI3	P10071	1580 aa		32.75	■■■□□ 2.83
U2AF1-208	ENST00000471250	LRP6	O75581	1613 aa		32.74	■■■□□ 2.83
U2AF1-208	ENST00000471250	BARGIN	Q6ZT62	677 aa		32.73	■■■□□ 2.83
U2AF1-208	ENST00000471250	NGLY1	Q96IV0	654 aa		32.72	■■■□□ 2.83
U2AF1-208	ENST00000471250	C8orf37	Q96NL8	207 aa		32.72	■■■□□ 2.83
U2AF1-208	ENST00000471250	DDX21	Q9NR30	783 aa	Known RBP eCLIP	32.72	■■■□□ 2.83
U2AF1-208	ENST00000471250	HYPK	Q9NX55	129 aa		32.72	■■■□□ 2.83
U2AF1-208	ENST00000471250	ANXA1	P04083	346 aa		32.71	■■■□□ 2.83
U2AF1-208	ENST00000471250	LAMB4	A4D0S4	1761 aa		32.7	■■■□□ 2.83
U2AF1-208	ENST00000471250	BCL9L	Q86UU0	1499 aa		32.7	■■■□□ 2.83
U2AF1-208	ENST00000471250	HSPA1L	P34931	641 aa		32.7	■■■□□ 2.83
U2AF1-208	ENST00000471250	SKAP1	Q86WV1	359 aa		32.7	■■■□□ 2.83
U2AF1-208	ENST00000471250	C1orf115	Q9H7X2	142 aa		32.7	■■■□□ 2.83

Retrieved 100 of 20,778 RNA–protein pairs in 22 ms