RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 GNPATO15228 680 aa12.46□□□□□ -0.41
SF3A1-206ENST00000471037 ATP6V1AP38606 617 aa12.46□□□□□ -0.41
SF3A1-206ENST00000471037 EIF4A2Q14240 407 aaKnown RBP12.46□□□□□ -0.41
SF3A1-206ENST00000471037 SMIM5Q71RC9 77 aa12.46□□□□□ -0.41
SF3A1-206ENST00000471037 GPBP1L1Q9HC44 474 aaPredicted RBP12.46□□□□□ -0.41
SF3A1-206ENST00000471037 EIF4G2P78344 907 aaKnown RBP eCLIP12.45□□□□□ -0.42
SF3A1-206ENST00000471037 ATG3Q9NT62 314 aa12.45□□□□□ -0.42
SF3A1-206ENST00000471037 KIF13BQ9NQT8 1826 aa12.44□□□□□ -0.42
SF3A1-206ENST00000471037 COL5A3P25940 1745 aaPredicted RBP12.43□□□□□ -0.42
SF3A1-206ENST00000471037 KIAA1551Q9HCM1 1747 aa12.43□□□□□ -0.42
SF3A1-206ENST00000471037 PXDNLA1KZ92 1463 aa12.43□□□□□ -0.42
SF3A1-206ENST00000471037 ERVV-2B6SEH9 535 aa12.43□□□□□ -0.42
SF3A1-206ENST00000471037 HSP90AB1P08238 724 aaKnown RBP12.43□□□□□ -0.42
SF3A1-206ENST00000471037 MMP10P09238 476 aa12.42□□□□□ -0.42
SF3A1-206ENST00000471037 ADRA2BP18089 450 aa12.42□□□□□ -0.42
SF3A1-206ENST00000471037 RC3H1Q5TC82 1133 aaKnown RBP12.42□□□□□ -0.42
SF3A1-206ENST00000471037 DCAF5Q96JK2 942 aa12.42□□□□□ -0.42
SF3A1-206ENST00000471037 SLC4A9Q96Q91 983 aa12.42□□□□□ -0.42
SF3A1-206ENST00000471037 RTCBQ9Y3I0 505 aaKnown RBP12.42□□□□□ -0.42
SF3A1-206ENST00000471037 KDM6AO15550 1401 aaPredicted RBP12.42□□□□□ -0.42
SF3A1-206ENST00000471037 C10orf71Q711Q0 1435 aa12.42□□□□□ -0.42
SF3A1-206ENST00000471037 CNTNAP4Q9C0A0 1308 aa12.41□□□□□ -0.42
SF3A1-206ENST00000471037 HSPA5P11021 654 aaKnown RBP12.41□□□□□ -0.42
SF3A1-206ENST00000471037 TGFB2P61812 414 aa12.41□□□□□ -0.42
SF3A1-206ENST00000471037 NLGN1Q8N2Q7 840 aa12.41□□□□□ -0.42
SF3A1-206ENST00000471037 CEP350Q5VT06 3117 aa12.4□□□□□ -0.42
SF3A1-206ENST00000471037 HSPA6P17066 643 aa12.4□□□□□ -0.42
SF3A1-206ENST00000471037 TNNT2P45379 298 aaPredicted RBP12.4□□□□□ -0.42
SF3A1-206ENST00000471037 AMOTQ4VCS5 1084 aa12.4□□□□□ -0.42
SF3A1-206ENST00000471037 PLEKHO1Q53GL0 409 aaPredicted RBP12.4□□□□□ -0.42
SF3A1-206ENST00000471037 TRAPPC3LQ5T215 181 aa12.4□□□□□ -0.42
SF3A1-206ENST00000471037 WWC3Q9ULE0 1092 aa12.4□□□□□ -0.42
SF3A1-206ENST00000471037 C4AP0C0L4 1744 aa12.4□□□□□ -0.43
SF3A1-206ENST00000471037 ZNF316A6NFI3 1004 aaPredicted RBP12.39□□□□□ -0.43
SF3A1-206ENST00000471037 ZNF526Q8TF50 670 aaPredicted RBP12.39□□□□□ -0.43
SF3A1-206ENST00000471037 ARHGEF1Q92888 912 aaKnown RBP12.39□□□□□ -0.43
SF3A1-206ENST00000471037 RBM42Q9BTD8 480 aaKnown RBP12.39□□□□□ -0.43
SF3A1-206ENST00000471037 KIF3CO14782 793 aa12.38□□□□□ -0.43
SF3A1-206ENST00000471037 RPS6KA4O75676 772 aa12.38□□□□□ -0.43
SF3A1-206ENST00000471037 GYS1P13807 737 aa12.38□□□□□ -0.43
SF3A1-206ENST00000471037 ZNF530Q6P9A1 599 aaPredicted RBP12.38□□□□□ -0.43
SF3A1-206ENST00000471037 POLR3GLQ9BT43 218 aa12.38□□□□□ -0.43
SF3A1-206ENST00000471037 CABP4P57796 275 aa12.37□□□□□ -0.43
SF3A1-206ENST00000471037 PANK3Q9H999 370 aa12.37□□□□□ -0.43
SF3A1-206ENST00000471037 CCDC87Q9NVE4 849 aa12.37□□□□□ -0.43
SF3A1-206ENST00000471037 N4BP2Q86UW6 1770 aaPredicted RBP12.37□□□□□ -0.43
SF3A1-206ENST00000471037 BRCA1P38398 1863 aaKnown RBP12.36□□□□□ -0.43
SF3A1-206ENST00000471037 RFC4P35249 363 aa12.36□□□□□ -0.43
SF3A1-206ENST00000471037 IFFO2Q5TF58 517 aa12.36□□□□□ -0.43
SF3A1-206ENST00000471037 AEBP1Q8IUX7 1158 aa12.36□□□□□ -0.43
SF3A1-206ENST00000471037 BCS1LQ9Y276 419 aa12.36□□□□□ -0.43
SF3A1-206ENST00000471037 MYH14Q7Z406 1995 aaKnown RBP12.36□□□□□ -0.43
SF3A1-206ENST00000471037 TJP1Q07157 1748 aa12.35□□□□□ -0.43
SF3A1-206ENST00000471037 A0A0G2JLW4 131 aa12.35□□□□□ -0.43
SF3A1-206ENST00000471037 MTHFSP49914 203 aa12.35□□□□□ -0.43
SF3A1-206ENST00000471037 C1orf141Q5JVX7 400 aa12.35□□□□□ -0.43
SF3A1-206ENST00000471037 PARP3Q9Y6F1 533 aa12.35□□□□□ -0.43
SF3A1-206ENST00000471037 DPEP1P16444 411 aa12.34□□□□□ -0.43
SF3A1-206ENST00000471037 CRKLP46109 303 aaKnown RBP12.34□□□□□ -0.43
SF3A1-206ENST00000471037 MORC1Q86VD1 984 aa12.34□□□□□ -0.43
SF3A1-206ENST00000471037 USP42Q9H9J4 1324 aaKnown RBP12.34□□□□□ -0.43
SF3A1-206ENST00000471037 ADAMTS7Q9UKP4 1686 aa12.33□□□□□ -0.44
SF3A1-206ENST00000471037 ARFGEF1Q9Y6D6 1849 aa12.33□□□□□ -0.44
SF3A1-206ENST00000471037 PTCD1O75127 700 aaKnown RBP12.33□□□□□ -0.44
SF3A1-206ENST00000471037 KCNA3P22001 575 aa12.33□□□□□ -0.44
SF3A1-206ENST00000471037 NFATC2IPQ8NCF5 419 aa12.33□□□□□ -0.44
SF3A1-206ENST00000471037 MRC1P22897 1456 aa12.33□□□□□ -0.44
SF3A1-206ENST00000471037 SCN11AQ9UI33 1791 aa12.33□□□□□ -0.44
SF3A1-206ENST00000471037 TOMM70O94826 608 aa12.32□□□□□ -0.44
SF3A1-206ENST00000471037 FCHSD2O94868 740 aa12.32□□□□□ -0.44
SF3A1-206ENST00000471037 IL13P35225 146 aa12.32□□□□□ -0.44
SF3A1-206ENST00000471037 SULT6B1Q6IMI4 303 aa12.32□□□□□ -0.44
SF3A1-206ENST00000471037 DDR1Q08345 913 aa12.31□□□□□ -0.44
SF3A1-206ENST00000471037 FKBP8Q14318 412 aa12.31□□□□□ -0.44
SF3A1-206ENST00000471037 ARHGAP27Q6ZUM4 889 aa12.31□□□□□ -0.44
SF3A1-206ENST00000471037 PIM2Q9P1W9 311 aa12.31□□□□□ -0.44
SF3A1-206ENST00000471037 SRP68Q9UHB9 627 aaKnown RBP12.31□□□□□ -0.44
SF3A1-206ENST00000471037 KNSTRNQ9Y448 316 aa12.31□□□□□ -0.44
SF3A1-206ENST00000471037 APLP1P51693 650 aa12.3□□□□□ -0.44
SF3A1-206ENST00000471037 AKAP4Q5JQC9 854 aa12.3□□□□□ -0.44
SF3A1-206ENST00000471037 INTS5Q6P9B9 1019 aaKnown RBP12.3□□□□□ -0.44
SF3A1-206ENST00000471037 DALRD3Q5D0E6 543 aaKnown RBP12.29□□□□□ -0.44
SF3A1-206ENST00000471037 AMER1Q5JTC6 1135 aaPredicted RBP12.29□□□□□ -0.44
SF3A1-206ENST00000471037 C9orf131Q5VYM1 1079 aa12.29□□□□□ -0.44
SF3A1-206ENST00000471037 SLC52A2Q9HAB3 445 aa12.29□□□□□ -0.44
SF3A1-206ENST00000471037 NMRK2Q9NPI5 230 aa12.29□□□□□ -0.44
SF3A1-206ENST00000471037 KCPQ6ZWJ8 1503 aa12.28□□□□□ -0.44
SF3A1-206ENST00000471037 POLRMTO00411 1230 aaKnown RBP12.28□□□□□ -0.44
SF3A1-206ENST00000471037 TM4SF1P30408 202 aa12.28□□□□□ -0.44
SF3A1-206ENST00000471037 SOS1Q07889 1333 aaPredicted RBP12.28□□□□□ -0.44
SF3A1-206ENST00000471037 DNAJC10Q8IXB1 793 aa12.27□□□□□ -0.45
SF3A1-206ENST00000471037 RBM46Q8TBY0 533 aaKnown RBP12.27□□□□□ -0.45
SF3A1-206ENST00000471037 NRXN2Q9P2S2 1712 aa12.27□□□□□ -0.45
SF3A1-206ENST00000471037 KIF7Q2M1P5 1343 aa12.27□□□□□ -0.45
SF3A1-206ENST00000471037 RNMTO43148 476 aaKnown RBP12.26□□□□□ -0.45
SF3A1-206ENST00000471037 ZPR1O75312 459 aa12.26□□□□□ -0.45
SF3A1-206ENST00000471037 CYP19A1P11511 503 aaPredicted RBP12.26□□□□□ -0.45
SF3A1-206ENST00000471037 CHRNA5P30532 468 aa12.26□□□□□ -0.45
SF3A1-206ENST00000471037 DNAJC5GQ8N7S2 189 aa12.26□□□□□ -0.45
SF3A1-206ENST00000471037 LGR6Q9HBX8 967 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms