RNA–Protein interactions for RNA: ENST00000468807.1

TTC28-204, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 2

Gene TTC28, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-204ENST00000468807 ERVV-2B6SEH9 535 aa29.56■■■□□ 2.32
TTC28-204ENST00000468807 LINC00116Q8NCU8 138 aa29.56■■■□□ 2.32
TTC28-204ENST00000468807 PER1O15534 1290 aaPredicted RBP29.55■■■□□ 2.32
TTC28-204ENST00000468807 SMIM5Q71RC9 77 aa29.55■■■□□ 2.32
TTC28-204ENST00000468807 UBR3Q6ZT12 1888 aa29.55■■■□□ 2.32
TTC28-204ENST00000468807 PELP1Q8IZL8 1130 aaKnown RBP29.54■■■□□ 2.32
TTC28-204ENST00000468807 GOLGB1Q14789 3259 aaKnown RBP29.54■■■□□ 2.32
TTC28-204ENST00000468807 KDM6AO15550 1401 aaPredicted RBP29.54■■■□□ 2.32
TTC28-204ENST00000468807 CABP4P57796 275 aa29.53■■■□□ 2.32
TTC28-204ENST00000468807 ITPK1Q13572 414 aa29.53■■■□□ 2.32
TTC28-204ENST00000468807 GPR162Q16538 588 aa29.53■■■□□ 2.32
TTC28-204ENST00000468807 AMIGO3Q86WK7 504 aa29.53■■■□□ 2.32
TTC28-204ENST00000468807 RBM42Q9BTD8 480 aaKnown RBP29.53■■■□□ 2.32
TTC28-204ENST00000468807 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.52■■■□□ 2.32
TTC28-204ENST00000468807 KDRP35968 1356 aa29.52■■■□□ 2.32
TTC28-204ENST00000468807 NLGN2Q8NFZ4 835 aa29.51■■■□□ 2.31
TTC28-204ENST00000468807 GNPATO15228 680 aa29.5■■■□□ 2.31
TTC28-204ENST00000468807 HMOX1P09601 288 aa29.5■■■□□ 2.31
TTC28-204ENST00000468807 SSFA2P28290 1259 aa29.48■■■□□ 2.31
TTC28-204ENST00000468807 DIAPH1O60610 1272 aaKnown RBP29.47■■■□□ 2.31
TTC28-204ENST00000468807 CHD4Q14839 1912 aa29.45■■■□□ 2.31
TTC28-204ENST00000468807 NFATC2IPQ8NCF5 419 aa29.44■■■□□ 2.3
TTC28-204ENST00000468807 SLC4A9Q96Q91 983 aa29.43■■■□□ 2.3
TTC28-204ENST00000468807 SCN11AQ9UI33 1791 aa29.42■■■□□ 2.3
TTC28-204ENST00000468807 PTCD1O75127 700 aaKnown RBP29.42■■■□□ 2.3
TTC28-204ENST00000468807 AKAP4Q5JQC9 854 aa29.42■■■□□ 2.3
TTC28-204ENST00000468807 NPC1L1Q9UHC9 1359 aa29.41■■■□□ 2.3
TTC28-204ENST00000468807 RTCBQ9Y3I0 505 aaKnown RBP29.41■■■□□ 2.3
TTC28-204ENST00000468807 ZNF831Q5JPB2 1677 aa29.4■■■□□ 2.3
TTC28-204ENST00000468807 COL5A3P25940 1745 aaPredicted RBP29.39■■■□□ 2.3
TTC28-204ENST00000468807 U2SURPO15042 1029 aaKnown RBP29.38■■■□□ 2.29
TTC28-204ENST00000468807 TRAPPC3LQ5T215 181 aa29.38■■■□□ 2.29
TTC28-204ENST00000468807 CD2APQ9Y5K6 639 aa29.37■■■□□ 2.29
TTC28-204ENST00000468807 LGR6Q9HBX8 967 aa29.36■■■□□ 2.29
TTC28-204ENST00000468807 VIRMAQ69YN4 1812 aaKnown RBP29.36■■■□□ 2.29
TTC28-204ENST00000468807 MTHFSDQ2M296 383 aaKnown RBP29.35■■■□□ 2.29
TTC28-204ENST00000468807 CNTNAP4Q9C0A0 1308 aa29.35■■■□□ 2.29
TTC28-204ENST00000468807 SLC52A2Q9HAB3 445 aa29.34■■■□□ 2.29
TTC28-204ENST00000468807 COL3A1P02461 1466 aaPredicted RBP29.34■■■□□ 2.29
TTC28-204ENST00000468807 RC3H1Q5TC82 1133 aaKnown RBP29.33■■■□□ 2.29
TTC28-204ENST00000468807 ZNF784Q8NCA9 323 aaPredicted RBP29.33■■■□□ 2.29
TTC28-204ENST00000468807 RNMTO43148 476 aaKnown RBP29.32■■■□□ 2.28
TTC28-204ENST00000468807 YBX3P16989 372 aaKnown RBP eCLIP29.32■■■□□ 2.28
TTC28-204ENST00000468807 MYH14Q7Z406 1995 aaKnown RBP29.32■■■□□ 2.28
TTC28-204ENST00000468807 MMP10P09238 476 aa29.31■■■□□ 2.28
TTC28-204ENST00000468807 RFC4P35249 363 aa29.31■■■□□ 2.28
TTC28-204ENST00000468807 ARHGEF1Q92888 912 aaKnown RBP29.31■■■□□ 2.28
TTC28-204ENST00000468807 RPS6KA4O75676 772 aa29.3■■■□□ 2.28
TTC28-204ENST00000468807 ADRA2BP18089 450 aa29.3■■■□□ 2.28
TTC28-204ENST00000468807 TJP1Q07157 1748 aa29.29■■■□□ 2.28
TTC28-204ENST00000468807 GRIN3BO60391 1043 aa29.29■■■□□ 2.28
TTC28-204ENST00000468807 CRKLP46109 303 aaKnown RBP29.29■■■□□ 2.28
TTC28-204ENST00000468807 CFAP53Q96M91 514 aa29.29■■■□□ 2.28
TTC28-204ENST00000468807 WWC3Q9ULE0 1092 aa29.29■■■□□ 2.28
TTC28-204ENST00000468807 SLC39A6Q13433 755 aa29.28■■■□□ 2.28
TTC28-204ENST00000468807 MRC1P22897 1456 aa29.27■■■□□ 2.28
TTC28-204ENST00000468807 NLGN1Q8N2Q7 840 aa29.26■■■□□ 2.27
TTC28-204ENST00000468807 C4AP0C0L4 1744 aa29.25■■■□□ 2.27
TTC28-204ENST00000468807 DNAJC10Q8IXB1 793 aa29.24■■■□□ 2.27
TTC28-204ENST00000468807 GYS1P13807 737 aa29.23■■■□□ 2.27
TTC28-204ENST00000468807 GAS2L2Q8NHY3 880 aa29.23■■■□□ 2.27
TTC28-204ENST00000468807 CICQ96RK0 1608 aaPredicted RBP29.23■■■□□ 2.27
TTC28-204ENST00000468807 ADAMTS7Q9UKP4 1686 aa29.22■■■□□ 2.27
TTC28-204ENST00000468807 PPP2R1AP30153 589 aa29.21■■■□□ 2.27
TTC28-204ENST00000468807 SRP68Q9UHB9 627 aaKnown RBP29.2■■■□□ 2.26
TTC28-204ENST00000468807 NUDCQ9Y266 331 aa29.2■■■□□ 2.26
TTC28-204ENST00000468807 GNAT3A8MTJ3 354 aa29.19■■■□□ 2.26
TTC28-204ENST00000468807 INTS5Q6P9B9 1019 aaKnown RBP29.19■■■□□ 2.26
TTC28-204ENST00000468807 CCDC87Q9NVE4 849 aa29.19■■■□□ 2.26
TTC28-204ENST00000468807 PARP3Q9Y6F1 533 aa29.19■■■□□ 2.26
TTC28-204ENST00000468807 KCPQ6ZWJ8 1503 aa29.19■■■□□ 2.26
TTC28-204ENST00000468807 PRKAR2BP31323 418 aa29.18■■■□□ 2.26
TTC28-204ENST00000468807 TEFQ10587 303 aa29.18■■■□□ 2.26
TTC28-204ENST00000468807 TTC5Q8N0Z6 440 aa29.18■■■□□ 2.26
TTC28-204ENST00000468807 U2AF1L5P0DN76 240 aaPredicted RBP29.16■■■□□ 2.26
TTC28-204ENST00000468807 U2AF1Q01081 240 aaKnown RBP eCLIP29.16■■■□□ 2.26
TTC28-204ENST00000468807 USP42Q9H9J4 1324 aaKnown RBP29.16■■■□□ 2.26
TTC28-204ENST00000468807 CYP19A1P11511 503 aaPredicted RBP29.15■■■□□ 2.26
TTC28-204ENST00000468807 IL17REQ8NFR9 667 aa29.15■■■□□ 2.26
TTC28-204ENST00000468807 RSPH6AQ9H0K4 717 aa29.15■■■□□ 2.26
TTC28-204ENST00000468807 N4BP2Q86UW6 1770 aaPredicted RBP29.14■■■□□ 2.26
TTC28-204ENST00000468807 PHACTR3Q96KR7 559 aa29.14■■■□□ 2.26
TTC28-204ENST00000468807 KIF13BQ9NQT8 1826 aa29.14■■■□□ 2.26
TTC28-204ENST00000468807 ZPR1O75312 459 aa29.13■■■□□ 2.25
TTC28-204ENST00000468807 FKBP8Q14318 412 aa29.13■■■□□ 2.25
TTC28-204ENST00000468807 UBR2Q8IWV8 1755 aa29.13■■■□□ 2.25
TTC28-204ENST00000468807 C10orf71Q711Q0 1435 aa29.12■■■□□ 2.25
TTC28-204ENST00000468807 PXDNLA1KZ92 1463 aa29.12■■■□□ 2.25
TTC28-204ENST00000468807 SOS1Q07889 1333 aaPredicted RBP29.12■■■□□ 2.25
TTC28-204ENST00000468807 A0A0G2JLW4 131 aa29.11■■■□□ 2.25
TTC28-204ENST00000468807 USPL1Q5W0Q7 1092 aa29.11■■■□□ 2.25
TTC28-204ENST00000468807 VSIG10Q8N0Z9 540 aa29.11■■■□□ 2.25
TTC28-204ENST00000468807 ZBTB1Q9Y2K1 713 aa29.11■■■□□ 2.25
TTC28-204ENST00000468807 TGFB2P61812 414 aa29.1■■■□□ 2.25
TTC28-204ENST00000468807 KIAA1551Q9HCM1 1747 aa29.08■■■□□ 2.25
TTC28-204ENST00000468807 SIPA1L3O60292 1781 aaPredicted RBP29.08■■■□□ 2.25
TTC28-204ENST00000468807 CANXP27824 592 aaKnown RBP29.08■■■□□ 2.25
TTC28-204ENST00000468807 ZNF790Q6PG37 636 aa29.08■■■□□ 2.25
TTC28-204ENST00000468807 COL15A1P39059 1388 aa29.08■■■□□ 2.25
TTC28-204ENST00000468807 STARD3NLO95772 234 aa29.07■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms