RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 KNSTRNQ9Y448 316 aa28.82■■■□□ 2.2
COL9A3-207ENST00000467819 GNPATO15228 680 aa28.81■■■□□ 2.2
COL9A3-207ENST00000467819 ZNF530Q6P9A1 599 aaPredicted RBP28.8■■■□□ 2.2
COL9A3-207ENST00000467819 AEBP1Q8IUX7 1158 aa28.8■■■□□ 2.2
COL9A3-207ENST00000467819 CD2APQ9Y5K6 639 aa28.8■■■□□ 2.2
COL9A3-207ENST00000467819 HSP90AB1P08238 724 aaKnown RBP28.79■■■□□ 2.2
COL9A3-207ENST00000467819 DCAF5Q96JK2 942 aa28.79■■■□□ 2.2
COL9A3-207ENST00000467819 ZNF831Q5JPB2 1677 aa28.79■■■□□ 2.2
COL9A3-207ENST00000467819 KDM6AO15550 1401 aaPredicted RBP28.78■■■□□ 2.2
COL9A3-207ENST00000467819 KDRP35968 1356 aa28.78■■■□□ 2.2
COL9A3-207ENST00000467819 COL5A3P25940 1745 aaPredicted RBP28.78■■■□□ 2.2
COL9A3-207ENST00000467819 ERVV-2B6SEH9 535 aa28.78■■■□□ 2.2
COL9A3-207ENST00000467819 GRIN3BO60391 1043 aa28.78■■■□□ 2.2
COL9A3-207ENST00000467819 RBM42Q9BTD8 480 aaKnown RBP28.77■■■□□ 2.2
COL9A3-207ENST00000467819 AMOTQ4VCS5 1084 aa28.76■■■□□ 2.19
COL9A3-207ENST00000467819 SULT6B1Q6IMI4 303 aa28.74■■■□□ 2.19
COL9A3-207ENST00000467819 KIF7Q2M1P5 1343 aa28.73■■■□□ 2.19
COL9A3-207ENST00000467819 CABP4P57796 275 aa28.73■■■□□ 2.19
COL9A3-207ENST00000467819 C1orf141Q5JVX7 400 aa28.73■■■□□ 2.19
COL9A3-207ENST00000467819 SLC4A9Q96Q91 983 aa28.73■■■□□ 2.19
COL9A3-207ENST00000467819 SCN11AQ9UI33 1791 aa28.73■■■□□ 2.19
COL9A3-207ENST00000467819 AMER1Q5JTC6 1135 aaPredicted RBP28.72■■■□□ 2.19
COL9A3-207ENST00000467819 VIRMAQ69YN4 1812 aaKnown RBP28.71■■■□□ 2.19
COL9A3-207ENST00000467819 MTHFSP49914 203 aa28.71■■■□□ 2.19
COL9A3-207ENST00000467819 MYH14Q7Z406 1995 aaKnown RBP28.71■■■□□ 2.19
COL9A3-207ENST00000467819 IL13P35225 146 aa28.7■■■□□ 2.18
COL9A3-207ENST00000467819 WWC3Q9ULE0 1092 aa28.7■■■□□ 2.18
COL9A3-207ENST00000467819 RTCBQ9Y3I0 505 aaKnown RBP28.7■■■□□ 2.18
COL9A3-207ENST00000467819 C4AP0C0L4 1744 aa28.69■■■□□ 2.18
COL9A3-207ENST00000467819 C1QTNF8P60827 252 aa28.67■■■□□ 2.18
COL9A3-207ENST00000467819 TRAPPC3LQ5T215 181 aa28.67■■■□□ 2.18
COL9A3-207ENST00000467819 KIF13BQ9NQT8 1826 aa28.66■■■□□ 2.18
COL9A3-207ENST00000467819 MMP10P09238 476 aa28.66■■■□□ 2.18
COL9A3-207ENST00000467819 TJP1Q07157 1748 aa28.66■■■□□ 2.18
COL9A3-207ENST00000467819 PTCD1O75127 700 aaKnown RBP28.65■■■□□ 2.18
COL9A3-207ENST00000467819 GIGYF1O75420 1035 aaPredicted RBP28.65■■■□□ 2.18
COL9A3-207ENST00000467819 NFATC2IPQ8NCF5 419 aa28.65■■■□□ 2.18
COL9A3-207ENST00000467819 CNTNAP4Q9C0A0 1308 aa28.65■■■□□ 2.18
COL9A3-207ENST00000467819 CICQ96RK0 1608 aaPredicted RBP28.65■■■□□ 2.18
COL9A3-207ENST00000467819 RC3H1Q5TC82 1133 aaKnown RBP28.64■■■□□ 2.18
COL9A3-207ENST00000467819 N4BP2Q86UW6 1770 aaPredicted RBP28.64■■■□□ 2.18
COL9A3-207ENST00000467819 ARHGEF1Q92888 912 aaKnown RBP28.62■■■□□ 2.17
COL9A3-207ENST00000467819 KIAA1551Q9HCM1 1747 aa28.62■■■□□ 2.17
COL9A3-207ENST00000467819 SENP3-EIF4A1A0A087X0R7 540 aa28.61■■■□□ 2.17
COL9A3-207ENST00000467819 ADRA2BP18089 450 aa28.61■■■□□ 2.17
COL9A3-207ENST00000467819 CC2D1BQ5T0F9 858 aaKnown RBP28.61■■■□□ 2.17
COL9A3-207ENST00000467819 ATP10DQ9P241 1426 aa28.6■■■□□ 2.17
COL9A3-207ENST00000467819 RPS6KA4O75676 772 aa28.6■■■□□ 2.17
COL9A3-207ENST00000467819 HMOX1P09601 288 aa28.6■■■□□ 2.17
COL9A3-207ENST00000467819 RFC4P35249 363 aa28.59■■■□□ 2.17
COL9A3-207ENST00000467819 AKAP4Q5JQC9 854 aa28.59■■■□□ 2.17
COL9A3-207ENST00000467819 NLGN1Q8N2Q7 840 aa28.59■■■□□ 2.17
COL9A3-207ENST00000467819 PER1O15534 1290 aaPredicted RBP28.57■■■□□ 2.16
COL9A3-207ENST00000467819 GYS1P13807 737 aa28.57■■■□□ 2.16
COL9A3-207ENST00000467819 PXDNLA1KZ92 1463 aa28.57■■■□□ 2.16
COL9A3-207ENST00000467819 CRKLP46109 303 aaKnown RBP28.56■■■□□ 2.16
COL9A3-207ENST00000467819 CNGB1Q14028 1251 aaPredicted RBP28.56■■■□□ 2.16
COL9A3-207ENST00000467819 C10orf71Q711Q0 1435 aa28.54■■■□□ 2.16
COL9A3-207ENST00000467819 LGR6Q9HBX8 967 aa28.54■■■□□ 2.16
COL9A3-207ENST00000467819 MRC1P22897 1456 aa28.53■■■□□ 2.16
COL9A3-207ENST00000467819 ADCY9O60503 1353 aa28.53■■■□□ 2.16
COL9A3-207ENST00000467819 DIAPH1O60610 1272 aaKnown RBP28.53■■■□□ 2.16
COL9A3-207ENST00000467819 SLC52A2Q9HAB3 445 aa28.53■■■□□ 2.16
COL9A3-207ENST00000467819 CCDC87Q9NVE4 849 aa28.52■■■□□ 2.16
COL9A3-207ENST00000467819 PARP3Q9Y6F1 533 aa28.52■■■□□ 2.16
COL9A3-207ENST00000467819 BRCA1P38398 1863 aaKnown RBP28.52■■■□□ 2.16
COL9A3-207ENST00000467819 ADAMTS7Q9UKP4 1686 aa28.51■■■□□ 2.16
COL9A3-207ENST00000467819 RNMTO43148 476 aaKnown RBP28.51■■■□□ 2.15
COL9A3-207ENST00000467819 SRP68Q9UHB9 627 aaKnown RBP28.51■■■□□ 2.15
COL9A3-207ENST00000467819 TGFB2P61812 414 aa28.5■■■□□ 2.15
COL9A3-207ENST00000467819 ZNF526Q8TF50 670 aaPredicted RBP28.5■■■□□ 2.15
COL9A3-207ENST00000467819 A0A0G2JLW4 131 aa28.49■■■□□ 2.15
COL9A3-207ENST00000467819 MTHFSDQ2M296 383 aaKnown RBP28.49■■■□□ 2.15
COL9A3-207ENST00000467819 GPBP1L1Q9HC44 474 aaPredicted RBP28.49■■■□□ 2.15
COL9A3-207ENST00000467819 SLC39A6Q13433 755 aa28.48■■■□□ 2.15
COL9A3-207ENST00000467819 DNAJC10Q8IXB1 793 aa28.48■■■□□ 2.15
COL9A3-207ENST00000467819 COL3A1P02461 1466 aaPredicted RBP28.47■■■□□ 2.15
COL9A3-207ENST00000467819 USP42Q9H9J4 1324 aaKnown RBP28.47■■■□□ 2.15
COL9A3-207ENST00000467819 INTS5Q6P9B9 1019 aaKnown RBP28.47■■■□□ 2.15
COL9A3-207ENST00000467819 BCS1LQ9Y276 419 aa28.47■■■□□ 2.15
COL9A3-207ENST00000467819 KCPQ6ZWJ8 1503 aa28.47■■■□□ 2.15
COL9A3-207ENST00000467819 UBR2Q8IWV8 1755 aa28.45■■■□□ 2.15
COL9A3-207ENST00000467819 DPEP1P16444 411 aa28.45■■■□□ 2.14
COL9A3-207ENST00000467819 FKBP8Q14318 412 aa28.45■■■□□ 2.14
COL9A3-207ENST00000467819 NPC1L1Q9UHC9 1359 aa28.45■■■□□ 2.14
COL9A3-207ENST00000467819 U2SURPO15042 1029 aaKnown RBP28.44■■■□□ 2.14
COL9A3-207ENST00000467819 ARFGEF1Q9Y6D6 1849 aa28.43■■■□□ 2.14
COL9A3-207ENST00000467819 DDR1Q08345 913 aa28.41■■■□□ 2.14
COL9A3-207ENST00000467819 SOS1Q07889 1333 aaPredicted RBP28.41■■■□□ 2.14
COL9A3-207ENST00000467819 FCHSD2O94868 740 aa28.4■■■□□ 2.14
COL9A3-207ENST00000467819 CYP19A1P11511 503 aaPredicted RBP28.4■■■□□ 2.14
COL9A3-207ENST00000467819 AFDNP55196 1824 aaKnown RBP28.4■■■□□ 2.14
COL9A3-207ENST00000467819 ZPR1O75312 459 aa28.39■■■□□ 2.14
COL9A3-207ENST00000467819 USPL1Q5W0Q7 1092 aa28.39■■■□□ 2.14
COL9A3-207ENST00000467819 SIPA1L3O60292 1781 aaPredicted RBP28.39■■■□□ 2.13
COL9A3-207ENST00000467819 COL15A1P39059 1388 aa28.37■■■□□ 2.13
COL9A3-207ENST00000467819 ARHGAP27Q6ZUM4 889 aa28.37■■■□□ 2.13
COL9A3-207ENST00000467819 ZBTB1Q9Y2K1 713 aa28.37■■■□□ 2.13
COL9A3-207ENST00000467819 KCNA3P22001 575 aa28.36■■■□□ 2.13
COL9A3-207ENST00000467819 CEP350Q5VT06 3117 aa28.35■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 154.2 ms