RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 PLEKHG2Q9H7P9 1386 aa9.44□□□□□ -0.9
USP54-210ENST00000466048 USP19O94966 1318 aa9.44□□□□□ -0.9
USP54-210ENST00000466048 GCP02774 474 aa9.44□□□□□ -0.9
USP54-210ENST00000466048 GCC1Q96CN9 775 aa9.44□□□□□ -0.9
USP54-210ENST00000466048 PKNOX2Q96KN3 472 aa9.44□□□□□ -0.9
USP54-210ENST00000466048 SLIT3O75094 1523 aa9.44□□□□□ -0.9
USP54-210ENST00000466048 DLG5Q8TDM6 1919 aa9.43□□□□□ -0.9
USP54-210ENST00000466048 TAF7Q15545 349 aaPredicted RBP9.43□□□□□ -0.9
USP54-210ENST00000466048 MCM10Q7L590 875 aa9.43□□□□□ -0.9
USP54-210ENST00000466048 GBP4Q96PP9 640 aa9.43□□□□□ -0.9
USP54-210ENST00000466048 NCAPD2Q15021 1401 aa9.43□□□□□ -0.9
USP54-210ENST00000466048 RLBP1P12271 317 aa9.43□□□□□ -0.9
USP54-210ENST00000466048 GSE1Q14687 1217 aa9.43□□□□□ -0.9
USP54-210ENST00000466048 GPATCH3Q96I76 525 aa9.43□□□□□ -0.9
USP54-210ENST00000466048 FAM83GA6ND36 823 aa9.43□□□□□ -0.9
USP54-210ENST00000466048 HSCBQ8IWL3 235 aa9.43□□□□□ -0.9
USP54-210ENST00000466048 NFAT5O94916 1531 aa9.43□□□□□ -0.9
USP54-210ENST00000466048 PHRF1Q9P1Y6 1649 aaKnown RBP9.43□□□□□ -0.9
USP54-210ENST00000466048 ORAI2Q96SN7 254 aa9.43□□□□□ -0.9
USP54-210ENST00000466048 TEX13AQ9BXU3 409 aaPredicted RBP9.43□□□□□ -0.9
USP54-210ENST00000466048 DDX54Q8TDD1 881 aaKnown RBP9.42□□□□□ -0.9
USP54-210ENST00000466048 ABCC4O15439 1325 aa9.42□□□□□ -0.9
USP54-210ENST00000466048 ELL2O00472 640 aaPredicted RBP9.42□□□□□ -0.9
USP54-210ENST00000466048 CCT4P50991 539 aaKnown RBP9.42□□□□□ -0.9
USP54-210ENST00000466048 DCTN1Q14203 1278 aa9.42□□□□□ -0.9
USP54-210ENST00000466048 ARHGEF25Q86VW2 580 aa9.42□□□□□ -0.9
USP54-210ENST00000466048 C8orf58Q8NAV2 365 aa9.42□□□□□ -0.9
USP54-210ENST00000466048 TNNT3P45378 269 aaPredicted RBP9.42□□□□□ -0.9
USP54-210ENST00000466048 KIAA2012Q0VF49 1180 aa9.42□□□□□ -0.9
USP54-210ENST00000466048 SMARCC1Q92922 1105 aaPredicted RBP9.42□□□□□ -0.9
USP54-210ENST00000466048 ZBTB40Q9NUA8 1239 aa9.42□□□□□ -0.9
USP54-210ENST00000466048 CHMP3Q9Y3E7 222 aa9.42□□□□□ -0.9
USP54-210ENST00000466048 CRB1P82279 1406 aa9.42□□□□□ -0.9
USP54-210ENST00000466048 AKAP4Q5JQC9 854 aa9.41□□□□□ -0.9
USP54-210ENST00000466048 KIF6Q6ZMV9 814 aa9.41□□□□□ -0.9
USP54-210ENST00000466048 MAP7D2Q96T17 732 aa9.41□□□□□ -0.9
USP54-210ENST00000466048 ABCC6O95255 1503 aa9.41□□□□□ -0.9
USP54-210ENST00000466048 IGHDP01880 384 aa9.41□□□□□ -0.9
USP54-210ENST00000466048 LTN1O94822 1766 aa9.41□□□□□ -0.9
USP54-210ENST00000466048 HOXB7P09629 217 aa9.41□□□□□ -0.9
USP54-210ENST00000466048 OVOS2A0A0G2JMS6 1433 aa9.41□□□□□ -0.9
USP54-210ENST00000466048 STARD3NLO95772 234 aa9.41□□□□□ -0.9
USP54-210ENST00000466048 ANKRD24Q8TF21 1146 aa9.41□□□□□ -0.9
USP54-210ENST00000466048 ANO8Q9HCE9 1232 aaPredicted RBP9.41□□□□□ -0.9
USP54-210ENST00000466048 PDZRN3Q9UPQ7 1066 aa9.41□□□□□ -0.9
USP54-210ENST00000466048 PCDHB15Q9Y5E8 787 aa9.4□□□□□ -0.9
USP54-210ENST00000466048 IFNL2Q8IZJ0 200 aa9.4□□□□□ -0.9
USP54-210ENST00000466048 TMOD3Q9NYL9 352 aa9.4□□□□□ -0.9
USP54-210ENST00000466048 MTERF4Q7Z6M4 381 aaKnown RBP9.4□□□□□ -0.9
USP54-210ENST00000466048 TSPYL6Q8N831 410 aa9.4□□□□□ -0.9
USP54-210ENST00000466048 C8orf37Q96NL8 207 aa9.4□□□□□ -0.9
USP54-210ENST00000466048 ZRSR1Q15695 479 aaKnown RBP9.4□□□□□ -0.91
USP54-210ENST00000466048 LRRFIP1Q32MZ4 808 aaKnown RBP9.4□□□□□ -0.91
USP54-210ENST00000466048 GORABQ5T7V8 394 aa9.4□□□□□ -0.91
USP54-210ENST00000466048 INTS3Q68E01 1043 aaKnown RBP9.4□□□□□ -0.91
USP54-210ENST00000466048 TNS3Q68CZ2 1445 aa9.39□□□□□ -0.91
USP54-210ENST00000466048 RPAP2Q8IXW5 612 aaPredicted RBP9.39□□□□□ -0.91
USP54-210ENST00000466048 MARF1Q9Y4F3 1742 aaKnown RBP9.39□□□□□ -0.91
USP54-210ENST00000466048 RBM42Q9BTD8 480 aaKnown RBP9.39□□□□□ -0.91
USP54-210ENST00000466048 ZNF772Q68DY9 489 aaPredicted RBP9.39□□□□□ -0.91
USP54-210ENST00000466048 SMC5Q8IY18 1101 aa9.39□□□□□ -0.91
USP54-210ENST00000466048 ZNF652Q9Y2D9 606 aa9.39□□□□□ -0.91
USP54-210ENST00000466048 SLC4A2P04920 1241 aa9.38□□□□□ -0.91
USP54-210ENST00000466048 PPP1R1BQ9UD71 204 aaPredicted RBP9.38□□□□□ -0.91
USP54-210ENST00000466048 TRPM3Q9HCF6 1732 aaPredicted RBP9.38□□□□□ -0.91
USP54-210ENST00000466048 ZBTB7BO15156 539 aaPredicted RBP9.38□□□□□ -0.91
USP54-210ENST00000466048 GNAI3P08754 354 aa9.38□□□□□ -0.91
USP54-210ENST00000466048 EIF2S2P20042 333 aaKnown RBP9.38□□□□□ -0.91
USP54-210ENST00000466048 TNNQ9UQP3 1299 aa9.38□□□□□ -0.91
USP54-210ENST00000466048 HSP90AB4PQ58FF6 505 aa9.37□□□□□ -0.91
USP54-210ENST00000466048 CERKQ8TCT0 537 aa9.37□□□□□ -0.91
USP54-210ENST00000466048 NBPF6Q5VWK0 638 aa9.37□□□□□ -0.91
USP54-210ENST00000466048 NBPF4Q96M43 638 aa9.37□□□□□ -0.91
USP54-210ENST00000466048 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.37□□□□□ -0.91
USP54-210ENST00000466048 C9orf78Q9NZ63 289 aaPredicted RBP9.37□□□□□ -0.91
USP54-210ENST00000466048 LRRC37A3O60309 1634 aa9.37□□□□□ -0.91
USP54-210ENST00000466048 DDB1Q16531 1140 aa9.37□□□□□ -0.91
USP54-210ENST00000466048 SLC4A10Q6U841 1118 aa9.37□□□□□ -0.91
USP54-210ENST00000466048 A0A087WZG4 1122 aa9.36□□□□□ -0.91
USP54-210ENST00000466048 RIC3Q7Z5B4 369 aa9.36□□□□□ -0.91
USP54-210ENST00000466048 IL2RBP14784 551 aa9.36□□□□□ -0.91
USP54-210ENST00000466048 NBPF14Q5TI25 921 aa9.36□□□□□ -0.91
USP54-210ENST00000466048 FAM208AQ9UK61 1670 aaKnown RBP9.36□□□□□ -0.91
USP54-210ENST00000466048 NUCB1Q02818 461 aa9.35□□□□□ -0.91
USP54-210ENST00000466048 USHBP1Q8N6Y0 703 aa9.35□□□□□ -0.91
USP54-210ENST00000466048 ZCRB1Q8TBF4 217 aaKnown RBP9.35□□□□□ -0.91
USP54-210ENST00000466048 SPATA31A3Q5VYP0 1347 aa9.35□□□□□ -0.91
USP54-210ENST00000466048 BTBD11A6QL63 1104 aa9.35□□□□□ -0.91
USP54-210ENST00000466048 FKBP5Q13451 457 aaPredicted RBP9.35□□□□□ -0.91
USP54-210ENST00000466048 HDGFL1Q5TGJ6 251 aa9.35□□□□□ -0.91
USP54-210ENST00000466048 CEMIPQ8WUJ3 1361 aa9.35□□□□□ -0.91
USP54-210ENST00000466048 HSP90AB3PQ58FF7 597 aa9.35□□□□□ -0.91
USP54-210ENST00000466048 CHD1LQ86WJ1 897 aa9.35□□□□□ -0.91
USP54-210ENST00000466048 ALS2Q96Q42 1657 aa9.35□□□□□ -0.91
USP54-210ENST00000466048 IL17REQ8NFR9 667 aa9.35□□□□□ -0.91
USP54-210ENST00000466048 SYAP1Q96A49 352 aaPredicted RBP9.35□□□□□ -0.91
USP54-210ENST00000466048 ZNF335Q9H4Z2 1342 aaPredicted RBP9.35□□□□□ -0.91
USP54-210ENST00000466048 CPDO75976 1380 aa9.34□□□□□ -0.91
USP54-210ENST00000466048 TRPC5Q9UL62 973 aaPredicted RBP9.34□□□□□ -0.91
USP54-210ENST00000466048 RNMTO43148 476 aaKnown RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms