RNA–Protein interactions for RNA: ENST00000463615.1

PDLIM4-205, Transcript of PDZ and LIM domain 4, humanhuman

TSL 2

Gene PDLIM4, Length 582 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-205ENST00000463615 SSFA2P28290 1259 aa27.89■■■□□ 2.06
PDLIM4-205ENST00000463615 ITPK1Q13572 414 aa27.89■■■□□ 2.06
PDLIM4-205ENST00000463615 CC2D1BQ5T0F9 858 aaKnown RBP27.88■■■□□ 2.05
PDLIM4-205ENST00000463615 AMIGO3Q86WK7 504 aa27.88■■■□□ 2.05
PDLIM4-205ENST00000463615 ATP6V1AP38606 617 aa27.87■■■□□ 2.05
PDLIM4-205ENST00000463615 C1orf141Q5JVX7 400 aa27.87■■■□□ 2.05
PDLIM4-205ENST00000463615 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.85■■■□□ 2.05
PDLIM4-205ENST00000463615 CABP4P57796 275 aa27.84■■■□□ 2.05
PDLIM4-205ENST00000463615 SLC4A9Q96Q91 983 aa27.84■■■□□ 2.05
PDLIM4-205ENST00000463615 DIAPH1O60610 1272 aaKnown RBP27.83■■■□□ 2.05
PDLIM4-205ENST00000463615 AKAP4Q5JQC9 854 aa27.82■■■□□ 2.04
PDLIM4-205ENST00000463615 MSL1Q68DK7 614 aa27.82■■■□□ 2.04
PDLIM4-205ENST00000463615 COL3A1P02461 1466 aaPredicted RBP27.82■■■□□ 2.04
PDLIM4-205ENST00000463615 RC3H1Q5TC82 1133 aaKnown RBP27.81■■■□□ 2.04
PDLIM4-205ENST00000463615 UTRNP46939 3433 aa27.8■■■□□ 2.04
PDLIM4-205ENST00000463615 CD2APQ9Y5K6 639 aa27.8■■■□□ 2.04
PDLIM4-205ENST00000463615 SCN11AQ9UI33 1791 aa27.8■■■□□ 2.04
PDLIM4-205ENST00000463615 GNPATO15228 680 aa27.79■■■□□ 2.04
PDLIM4-205ENST00000463615 NLGN2Q8NFZ4 835 aa27.79■■■□□ 2.04
PDLIM4-205ENST00000463615 COL5A3P25940 1745 aaPredicted RBP27.78■■■□□ 2.04
PDLIM4-205ENST00000463615 CNTNAP4Q9C0A0 1308 aa27.78■■■□□ 2.04
PDLIM4-205ENST00000463615 PHF14O94880 888 aa27.78■■■□□ 2.04
PDLIM4-205ENST00000463615 KLHL34Q8N239 644 aa27.78■■■□□ 2.04
PDLIM4-205ENST00000463615 NFATC2IPQ8NCF5 419 aa27.78■■■□□ 2.04
PDLIM4-205ENST00000463615 CICQ96RK0 1608 aaPredicted RBP27.78■■■□□ 2.04
PDLIM4-205ENST00000463615 RBM42Q9BTD8 480 aaKnown RBP27.77■■■□□ 2.04
PDLIM4-205ENST00000463615 MRC1P22897 1456 aa27.76■■■□□ 2.04
PDLIM4-205ENST00000463615 ADAMTS7Q9UKP4 1686 aa27.76■■■□□ 2.03
PDLIM4-205ENST00000463615 HMOX1P09601 288 aa27.76■■■□□ 2.03
PDLIM4-205ENST00000463615 SMIM5Q71RC9 77 aa27.76■■■□□ 2.03
PDLIM4-205ENST00000463615 CHD4Q14839 1912 aa27.75■■■□□ 2.03
PDLIM4-205ENST00000463615 ADRA2BP18089 450 aa27.75■■■□□ 2.03
PDLIM4-205ENST00000463615 GPR162Q16538 588 aa27.75■■■□□ 2.03
PDLIM4-205ENST00000463615 RTCBQ9Y3I0 505 aaKnown RBP27.74■■■□□ 2.03
PDLIM4-205ENST00000463615 SLC52A2Q9HAB3 445 aa27.73■■■□□ 2.03
PDLIM4-205ENST00000463615 RPS6KA4O75676 772 aa27.72■■■□□ 2.03
PDLIM4-205ENST00000463615 MTHFSDQ2M296 383 aaKnown RBP27.72■■■□□ 2.03
PDLIM4-205ENST00000463615 RNMTO43148 476 aaKnown RBP27.71■■■□□ 2.03
PDLIM4-205ENST00000463615 TRAPPC3LQ5T215 181 aa27.71■■■□□ 2.03
PDLIM4-205ENST00000463615 LGR6Q9HBX8 967 aa27.71■■■□□ 2.03
PDLIM4-205ENST00000463615 PTCD1O75127 700 aaKnown RBP27.69■■■□□ 2.02
PDLIM4-205ENST00000463615 MYH14Q7Z406 1995 aaKnown RBP27.69■■■□□ 2.02
PDLIM4-205ENST00000463615 TJP1Q07157 1748 aa27.68■■■□□ 2.02
PDLIM4-205ENST00000463615 GRIN3BO60391 1043 aa27.67■■■□□ 2.02
PDLIM4-205ENST00000463615 NLGN1Q8N2Q7 840 aa27.67■■■□□ 2.02
PDLIM4-205ENST00000463615 ARHGEF1Q92888 912 aaKnown RBP27.67■■■□□ 2.02
PDLIM4-205ENST00000463615 YBX3P16989 372 aaKnown RBP eCLIP27.65■■■□□ 2.022e-6■■■□□ 15.1
PDLIM4-205ENST00000463615 ZNF784Q8NCA9 323 aaPredicted RBP27.65■■■□□ 2.02
PDLIM4-205ENST00000463615 VIRMAQ69YN4 1812 aaKnown RBP27.64■■■□□ 2.02
PDLIM4-205ENST00000463615 U2SURPO15042 1029 aaKnown RBP27.64■■■□□ 2.02
PDLIM4-205ENST00000463615 CRKLP46109 303 aaKnown RBP27.64■■■□□ 2.02
PDLIM4-205ENST00000463615 CFAP53Q96M91 514 aa27.64■■■□□ 2.02
PDLIM4-205ENST00000463615 GAS2L2Q8NHY3 880 aa27.63■■■□□ 2.01
PDLIM4-205ENST00000463615 MMP10P09238 476 aa27.62■■■□□ 2.01
PDLIM4-205ENST00000463615 GYS1P13807 737 aa27.62■■■□□ 2.01
PDLIM4-205ENST00000463615 CNGB1Q14028 1251 aaPredicted RBP27.62■■■□□ 2.01
PDLIM4-205ENST00000463615 PELP1Q8IZL8 1130 aaKnown RBP27.62■■■□□ 2.01
PDLIM4-205ENST00000463615 KCPQ6ZWJ8 1503 aa27.62■■■□□ 2.01
PDLIM4-205ENST00000463615 GOLGB1Q14789 3259 aaKnown RBP27.61■■■□□ 2.01
PDLIM4-205ENST00000463615 PPP2R1AP30153 589 aa27.61■■■□□ 2.01
PDLIM4-205ENST00000463615 RFC4P35249 363 aa27.61■■■□□ 2.01
PDLIM4-205ENST00000463615 VSIG10Q8N0Z9 540 aa27.61■■■□□ 2.01
PDLIM4-205ENST00000463615 C4AP0C0L4 1744 aa27.61■■■□□ 2.01
PDLIM4-205ENST00000463615 INTS5Q6P9B9 1019 aaKnown RBP27.6■■■□□ 2.01
PDLIM4-205ENST00000463615 KIF13BQ9NQT8 1826 aa27.59■■■□□ 2.01
PDLIM4-205ENST00000463615 GNAT3A8MTJ3 354 aa27.58■■■□□ 2.01
PDLIM4-205ENST00000463615 SLC39A6Q13433 755 aa27.58■■■□□ 2.01
PDLIM4-205ENST00000463615 DNAJC10Q8IXB1 793 aa27.58■■■□□ 2.01
PDLIM4-205ENST00000463615 RSPH6AQ9H0K4 717 aa27.58■■■□□ 2.01
PDLIM4-205ENST00000463615 NUDCQ9Y266 331 aa27.58■■■□□ 2.01
PDLIM4-205ENST00000463615 UBR2Q8IWV8 1755 aa27.58■■■□□ 2
PDLIM4-205ENST00000463615 IL17REQ8NFR9 667 aa27.57■■■□□ 2
PDLIM4-205ENST00000463615 CYP19A1P11511 503 aaPredicted RBP27.56■■■□□ 2
PDLIM4-205ENST00000463615 CCDC87Q9NVE4 849 aa27.56■■■□□ 2
PDLIM4-205ENST00000463615 USP42Q9H9J4 1324 aaKnown RBP27.56■■■□□ 2
PDLIM4-205ENST00000463615 CEMIPQ8WUJ3 1361 aa27.56■■■□□ 2
PDLIM4-205ENST00000463615 C10orf71Q711Q0 1435 aa27.56■■■□□ 2
PDLIM4-205ENST00000463615 PRKAR2BP31323 418 aa27.54■■■□□ 2
PDLIM4-205ENST00000463615 TGFB2P61812 414 aa27.54■■■□□ 2
PDLIM4-205ENST00000463615 SOS1Q07889 1333 aaPredicted RBP27.53■■■□□ 2
PDLIM4-205ENST00000463615 PHACTR3Q96KR7 559 aa27.53■■■□□ 2
PDLIM4-205ENST00000463615 SIPA1L3O60292 1781 aaPredicted RBP27.53■■■□□ 2
PDLIM4-205ENST00000463615 FCHSD2O94868 740 aa27.52■■■□□ 2
PDLIM4-205ENST00000463615 KIAA1551Q9HCM1 1747 aa27.52■■■□□ 2
PDLIM4-205ENST00000463615 PXDNLA1KZ92 1463 aa27.51■■■□□ 2
PDLIM4-205ENST00000463615 TEFQ10587 303 aa27.51■■□□□ 1.99
PDLIM4-205ENST00000463615 SRP68Q9UHB9 627 aaKnown RBP27.5■■□□□ 1.99
PDLIM4-205ENST00000463615 PARP3Q9Y6F1 533 aa27.5■■□□□ 1.99
PDLIM4-205ENST00000463615 FKBP8Q14318 412 aa27.49■■□□□ 1.99
PDLIM4-205ENST00000463615 ZNF790Q6PG37 636 aa27.49■■□□□ 1.99
PDLIM4-205ENST00000463615 TTC5Q8N0Z6 440 aa27.49■■□□□ 1.99
PDLIM4-205ENST00000463615 U2AF1L5P0DN76 240 aaPredicted RBP27.48■■□□□ 1.99
PDLIM4-205ENST00000463615 U2AF1Q01081 240 aaKnown RBP eCLIP27.48■■□□□ 1.99
PDLIM4-205ENST00000463615 ZBTB1Q9Y2K1 713 aa27.47■■□□□ 1.99
PDLIM4-205ENST00000463615 HEG1Q9ULI3 1381 aa27.47■■□□□ 1.99
PDLIM4-205ENST00000463615 TM4SF1P30408 202 aa27.46■■□□□ 1.99
PDLIM4-205ENST00000463615 ZNF496Q96IT1 587 aaPredicted RBP27.46■■□□□ 1.99
PDLIM4-205ENST00000463615 TEX13AQ9BXU3 409 aaPredicted RBP27.46■■□□□ 1.99
PDLIM4-205ENST00000463615 NARFQ9UHQ1 456 aa27.46■■□□□ 1.99
PDLIM4-205ENST00000463615 COL15A1P39059 1388 aa27.46■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms