RNA–Protein interactions for RNA: ENST00000462996.1

PTPN18-208, Transcript of protein tyrosine phosphatase, non-receptor type 18, human

TSL 4

Gene PTPN18, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN18-208	ENST00000462996	TGFB2	P61812	414 aa		28.21	■■■□□ 2.11
PTPN18-208	ENST00000462996	NMRK2	Q9NPI5	230 aa		28.21	■■■□□ 2.11
PTPN18-208	ENST00000462996	ARHGAP27	Q6ZUM4	889 aa		28.18	■■■□□ 2.1
PTPN18-208	ENST00000462996	ATG3	Q9NT62	314 aa		28.18	■■■□□ 2.1
PTPN18-208	ENST00000462996	TMF1	P82094	1093 aa		28.16	■■■□□ 2.1
PTPN18-208	ENST00000462996	C10orf71	Q711Q0	1435 aa		28.16	■■■□□ 2.1
PTPN18-208	ENST00000462996	EYA1	Q99502	592 aa		28.15	■■■□□ 2.1
PTPN18-208	ENST00000462996	CARD14	Q9BXL6	1004 aa		28.15	■■■□□ 2.1
PTPN18-208	ENST00000462996	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	28.15	■■■□□ 2.1
PTPN18-208	ENST00000462996	PPM1G	O15355	546 aa	Predicted RBP	28.14	■■■□□ 2.1
PTPN18-208	ENST00000462996	PHKG2	P15735	406 aa		28.14	■■■□□ 2.1
PTPN18-208	ENST00000462996	DPEP1	P16444	411 aa		28.14	■■■□□ 2.1
PTPN18-208	ENST00000462996	TRAPPC3L	Q5T215	181 aa		28.14	■■■□□ 2.1
PTPN18-208	ENST00000462996	NLGN1	Q8N2Q7	840 aa		28.14	■■■□□ 2.1
PTPN18-208	ENST00000462996	WDR90	Q96KV7	1748 aa		28.14	■■■□□ 2.1
PTPN18-208	ENST00000462996	BRCA1	P38398	1863 aa	Known RBP	28.13	■■■□□ 2.09
PTPN18-208	ENST00000462996	PCNT	O95613	3336 aa		28.13	■■■□□ 2.09
PTPN18-208	ENST00000462996	SLC4A9	Q96Q91	983 aa		28.13	■■■□□ 2.09
PTPN18-208	ENST00000462996	RTCB	Q9Y3I0	505 aa	Known RBP	28.13	■■■□□ 2.09
PTPN18-208	ENST00000462996	FCHSD2	O94868	740 aa		28.12	■■■□□ 2.09
PTPN18-208	ENST00000462996	HTRA3	P83110	453 aa		28.12	■■■□□ 2.09
PTPN18-208	ENST00000462996	IFNL2	Q8IZJ0	200 aa		28.12	■■■□□ 2.09
PTPN18-208	ENST00000462996	RBM46	Q8TBY0	533 aa	Known RBP	28.11	■■■□□ 2.09
PTPN18-208	ENST00000462996	ARHGEF1	Q92888	912 aa	Known RBP	28.11	■■■□□ 2.09
PTPN18-208	ENST00000462996	WASHC2A	Q641Q2	1341 aa		28.11	■■■□□ 2.09
PTPN18-208	ENST00000462996	KDR	P35968	1356 aa		28.11	■■■□□ 2.09
PTPN18-208	ENST00000462996	ANKRD26	Q9UPS8	1709 aa		28.1	■■■□□ 2.09
PTPN18-208	ENST00000462996	KCNA3	P22001	575 aa		28.1	■■■□□ 2.09
PTPN18-208	ENST00000462996	C4A	P0C0L4	1744 aa		28.09	■■■□□ 2.09
PTPN18-208	ENST00000462996	GYS1	P13807	737 aa		28.09	■■■□□ 2.09
PTPN18-208	ENST00000462996	C9orf131	Q5VYM1	1079 aa		28.09	■■■□□ 2.09
PTPN18-208	ENST00000462996	CCDC87	Q9NVE4	849 aa		28.09	■■■□□ 2.09
PTPN18-208	ENST00000462996	COL13A1	Q5TAT6	717 aa	Predicted RBP	28.07	■■■□□ 2.08
PTPN18-208	ENST00000462996	RC3H1	Q5TC82	1133 aa	Known RBP	28.07	■■■□□ 2.08
PTPN18-208	ENST00000462996	KLRG1	Q96E93	195 aa		28.07	■■■□□ 2.08
PTPN18-208	ENST00000462996	ARFGEF1	Q9Y6D6	1849 aa		28.06	■■■□□ 2.08
PTPN18-208	ENST00000462996	ADRA2B	P18089	450 aa		28.05	■■■□□ 2.08
PTPN18-208	ENST00000462996	COL5A3	P25940	1745 aa	Predicted RBP	28.05	■■■□□ 2.08
PTPN18-208	ENST00000462996	ZNF831	Q5JPB2	1677 aa		28.05	■■■□□ 2.08
PTPN18-208	ENST00000462996	JMY	Q8N9B5	988 aa		28.05	■■■□□ 2.08
PTPN18-208	ENST00000462996	RBM42	Q9BTD8	480 aa	Known RBP	28.05	■■■□□ 2.08
PTPN18-208	ENST00000462996	PARP3	Q9Y6F1	533 aa		28.05	■■■□□ 2.08
PTPN18-208	ENST00000462996	RFC4	P35249	363 aa		28.04	■■■□□ 2.08
PTPN18-208	ENST00000462996	MYH14	Q7Z406	1995 aa	Known RBP	28.04	■■■□□ 2.08
PTPN18-208	ENST00000462996	RPS6KA4	O75676	772 aa		28.03	■■■□□ 2.08
PTPN18-208	ENST00000462996	C16orf71	Q8IYS4	520 aa	Predicted RBP	28.03	■■■□□ 2.08
PTPN18-208	ENST00000462996	CNTNAP4	Q9C0A0	1308 aa		28.02	■■■□□ 2.08
PTPN18-208	ENST00000462996	FSTL1	Q12841	308 aa		28.02	■■■□□ 2.08
PTPN18-208	ENST00000462996	CDCA8	Q53HL2	280 aa		28.02	■■■□□ 2.08
PTPN18-208	ENST00000462996	KCP	Q6ZWJ8	1503 aa		28.02	■■■□□ 2.08
PTPN18-208	ENST00000462996	PLEKHG2	Q9H7P9	1386 aa		28.01	■■■□□ 2.07
PTPN18-208	ENST00000462996	POLK	Q9UBT6	870 aa		28.01	■■■□□ 2.07
PTPN18-208	ENST00000462996	ERVV-2	B6SEH9	535 aa		28	■■■□□ 2.07
PTPN18-208	ENST00000462996	DCAF5	Q96JK2	942 aa		28	■■■□□ 2.07
PTPN18-208	ENST00000462996	PIM2	Q9P1W9	311 aa		28	■■■□□ 2.07
PTPN18-208	ENST00000462996	EIF4A2	Q14240	407 aa	Known RBP	27.98	■■■□□ 2.07
PTPN18-208	ENST00000462996	RRAGC	Q9HB90	399 aa		27.98	■■■□□ 2.07
PTPN18-208	ENST00000462996	RNF181	Q9P0P0	153 aa		27.97	■■■□□ 2.07
PTPN18-208	ENST00000462996	KDM2B	Q8NHM5	1336 aa		27.96	■■■□□ 2.07
PTPN18-208	ENST00000462996	SBF1	O95248	1867 aa		27.96	■■■□□ 2.07
PTPN18-208	ENST00000462996	DALRD3	Q5D0E6	543 aa	Known RBP	27.96	■■■□□ 2.07
PTPN18-208	ENST00000462996	SRP68	Q9UHB9	627 aa	Known RBP	27.95	■■■□□ 2.06
PTPN18-208	ENST00000462996	CAPN15	O75808	1086 aa		27.94	■■■□□ 2.06
PTPN18-208	ENST00000462996	DDR1	Q08345	913 aa		27.94	■■■□□ 2.06
PTPN18-208	ENST00000462996	FKBP8	Q14318	412 aa		27.93	■■■□□ 2.06
PTPN18-208	ENST00000462996	KDM6A	O15550	1401 aa	Predicted RBP	27.92	■■■□□ 2.06
PTPN18-208	ENST00000462996	CHRNA5	P30532	468 aa		27.92	■■■□□ 2.06
PTPN18-208	ENST00000462996	HSP90AB1	P08238	724 aa	Known RBP	27.91	■■■□□ 2.06
PTPN18-208	ENST00000462996	CRKL	P46109	303 aa	Known RBP	27.91	■■■□□ 2.06
PTPN18-208	ENST00000462996	TNRC6C	Q9HCJ0	1690 aa	Known RBP	27.91	■■■□□ 2.06
PTPN18-208	ENST00000462996	PTCD1	O75127	700 aa	Known RBP	27.9	■■■□□ 2.06
PTPN18-208	ENST00000462996	CABP4	P57796	275 aa		27.9	■■■□□ 2.06
PTPN18-208	ENST00000462996	USP42	Q9H9J4	1324 aa	Known RBP	27.9	■■■□□ 2.06
PTPN18-208	ENST00000462996	TNNT2	P45379	298 aa	Predicted RBP	27.89	■■■□□ 2.06
PTPN18-208	ENST00000462996	TNS4	Q8IZW8	715 aa		27.89	■■■□□ 2.06
PTPN18-208	ENST00000462996	PLEKHO1	Q53GL0	409 aa	Predicted RBP	27.88	■■■□□ 2.05
PTPN18-208	ENST00000462996	ZNF530	Q6P9A1	599 aa	Predicted RBP	27.87	■■■□□ 2.05
PTPN18-208	ENST00000462996	SMC1B	Q8NDV3	1235 aa		27.87	■■■□□ 2.05
PTPN18-208	ENST00000462996	POLRMT	O00411	1230 aa	Known RBP	27.85	■■■□□ 2.05
PTPN18-208	ENST00000462996	TM4SF1	P30408	202 aa		27.85	■■■□□ 2.05
PTPN18-208	ENST00000462996	PRELP	P51888	382 aa		27.85	■■■□□ 2.05
PTPN18-208	ENST00000462996	RASSF7	Q02833	373 aa		27.84	■■■□□ 2.05
PTPN18-208	ENST00000462996	NFATC2IP	Q8NCF5	419 aa		27.84	■■■□□ 2.05
PTPN18-208	ENST00000462996	ADAMTS7	Q9UKP4	1686 aa		27.84	■■■□□ 2.05
PTPN18-208	ENST00000462996	TJP1	Q07157	1748 aa		27.84	■■■□□ 2.05
PTPN18-208	ENST00000462996	MTHFS	P49914	203 aa		27.83	■■■□□ 2.05
PTPN18-208	ENST00000462996	INTS5	Q6P9B9	1019 aa	Known RBP	27.83	■■■□□ 2.05
PTPN18-208	ENST00000462996	AMOT	Q4VCS5	1084 aa		27.82	■■■□□ 2.04
PTPN18-208	ENST00000462996	ZC3H4	Q9UPT8	1303 aa	Known RBP	27.78	■■■□□ 2.04
PTPN18-208	ENST00000462996	USPL1	Q5W0Q7	1092 aa		27.78	■■■□□ 2.04
PTPN18-208	ENST00000462996	AEBP1	Q8IUX7	1158 aa		27.78	■■■□□ 2.04
PTPN18-208	ENST00000462996	AFDN	P55196	1824 aa	Known RBP	27.77	■■■□□ 2.04
PTPN18-208	ENST00000462996	GLTPD2	A6NH11	291 aa		27.77	■■■□□ 2.04
PTPN18-208	ENST00000462996	HSPA1A	P0DMV8	641 aa	Known RBP	27.77	■■■□□ 2.04
PTPN18-208	ENST00000462996	HSPA1B	P0DMV9	641 aa	Known RBP	27.77	■■■□□ 2.04
PTPN18-208	ENST00000462996	VEGFA	P15692	232 aa	Predicted RBP	27.77	■■■□□ 2.04
PTPN18-208	ENST00000462996	C1orf141	Q5JVX7	400 aa		27.77	■■■□□ 2.04
PTPN18-208	ENST00000462996	LMNB1	P20700	586 aa		27.76	■■■□□ 2.03
PTPN18-208	ENST00000462996	CCDC88A	Q3V6T2	1871 aa		27.75	■■■□□ 2.03
PTPN18-208	ENST00000462996	ZPR1	O75312	459 aa		27.75	■■■□□ 2.03

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms