RNA–Protein interactions for RNA: ENST00000462730.5

HDAC6-213, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-213ENST00000462730 STRN4Q9NRL3 753 aa18.35■□□□□ 0.53
HDAC6-213ENST00000462730 BABAM1Q9NWV8 329 aa18.35■□□□□ 0.53
HDAC6-213ENST00000462730 SIPA1L3O60292 1781 aaPredicted RBP18.35■□□□□ 0.53
HDAC6-213ENST00000462730 RNMTO43148 476 aaKnown RBP18.35■□□□□ 0.53
HDAC6-213ENST00000462730 PDE4AP27815 886 aa18.35■□□□□ 0.53
HDAC6-213ENST00000462730 ZBTB40Q9NUA8 1239 aa18.35■□□□□ 0.53
HDAC6-213ENST00000462730 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.35■□□□□ 0.531e-11■■□□□ 11.5
HDAC6-213ENST00000462730 SPG7Q9UQ90 795 aa18.35■□□□□ 0.53
HDAC6-213ENST00000462730 SCN11AQ9UI33 1791 aa18.34■□□□□ 0.53
HDAC6-213ENST00000462730 UBAP1LF5GYI3 381 aa18.33■□□□□ 0.53
HDAC6-213ENST00000462730 TEFQ10587 303 aa18.33■□□□□ 0.53
HDAC6-213ENST00000462730 LARP1Q6PKG0 1096 aaKnown RBP18.33■□□□□ 0.53
HDAC6-213ENST00000462730 KDM6AO15550 1401 aaPredicted RBP18.33■□□□□ 0.52
HDAC6-213ENST00000462730 PHKG2P15735 406 aa18.32■□□□□ 0.52
HDAC6-213ENST00000462730 EVA1CP58658 441 aa18.32■□□□□ 0.52
HDAC6-213ENST00000462730 CARD10Q9BWT7 1032 aa18.32■□□□□ 0.52
HDAC6-213ENST00000462730 BTG4Q9NY30 223 aa18.32■□□□□ 0.52
HDAC6-213ENST00000462730 ANP32AP39687 249 aaKnown RBP18.31■□□□□ 0.52
HDAC6-213ENST00000462730 BACH2Q9BYV9 841 aa18.31■□□□□ 0.52
HDAC6-213ENST00000462730 CHMP4BQ9H444 224 aaKnown RBP18.31■□□□□ 0.52
HDAC6-213ENST00000462730 PLCH1Q4KWH8 1693 aa18.31■□□□□ 0.52
HDAC6-213ENST00000462730 RGS12O14924 1447 aa18.3■□□□□ 0.52
HDAC6-213ENST00000462730 HDAC1Q13547 482 aaPredicted RBP18.3■□□□□ 0.52
HDAC6-213ENST00000462730 IFNL2Q8IZJ0 200 aa18.3■□□□□ 0.52
HDAC6-213ENST00000462730 PTPRCP08575 1304 aa18.3■□□□□ 0.52
HDAC6-213ENST00000462730 SHANK3Q9BYB0 1731 aa18.3■□□□□ 0.52
HDAC6-213ENST00000462730 BTBD11A6QL63 1104 aa18.3■□□□□ 0.52
HDAC6-213ENST00000462730 ZBTB7BO15156 539 aaPredicted RBP18.3■□□□□ 0.52
HDAC6-213ENST00000462730 SLC4A2P04920 1241 aa18.3■□□□□ 0.52
HDAC6-213ENST00000462730 CYP27B1O15528 508 aa18.29■□□□□ 0.52
HDAC6-213ENST00000462730 IPO9Q96P70 1041 aaKnown RBP18.29■□□□□ 0.52
HDAC6-213ENST00000462730 PDZRN3Q9UPQ7 1066 aa18.29■□□□□ 0.52
HDAC6-213ENST00000462730 SOS1Q07889 1333 aaPredicted RBP18.28■□□□□ 0.52
HDAC6-213ENST00000462730 MRC1P22897 1456 aa18.28■□□□□ 0.52
HDAC6-213ENST00000462730 IL2RBP14784 551 aa18.28■□□□□ 0.52
HDAC6-213ENST00000462730 STK31Q9BXU1 1019 aa18.28■□□□□ 0.52
HDAC6-213ENST00000462730 USP35Q9P2H5 1018 aa18.27■□□□□ 0.52
HDAC6-213ENST00000462730 NRAPQ86VF7 1730 aa18.27■□□□□ 0.51
HDAC6-213ENST00000462730 PCDH11XQ9BZA7 1347 aa18.26■□□□□ 0.51
HDAC6-213ENST00000462730 PCDH11YQ9BZA8 1340 aa18.26■□□□□ 0.51
HDAC6-213ENST00000462730 EIF4A1P60842 406 aaKnown RBP18.26■□□□□ 0.51
HDAC6-213ENST00000462730 CCDC30Q5VVM6 783 aa18.26■□□□□ 0.51
HDAC6-213ENST00000462730 INTS3Q68E01 1043 aaKnown RBP18.26■□□□□ 0.51
HDAC6-213ENST00000462730 KCNQ3O43525 872 aa18.26■□□□□ 0.51
HDAC6-213ENST00000462730 ADAMTS2O95450 1211 aa18.26■□□□□ 0.51
HDAC6-213ENST00000462730 G2E3Q7L622 706 aa18.26■□□□□ 0.51
HDAC6-213ENST00000462730 C1orf115Q9H7X2 142 aa18.26■□□□□ 0.51
HDAC6-213ENST00000462730 ZCRB1Q8TBF4 217 aaKnown RBP18.25■□□□□ 0.51
HDAC6-213ENST00000462730 NECTIN2Q92692 538 aa18.25■□□□□ 0.51
HDAC6-213ENST00000462730 DCAF5Q96JK2 942 aa18.25■□□□□ 0.51
HDAC6-213ENST00000462730 HSP90AB1P08238 724 aaKnown RBP18.24■□□□□ 0.51
HDAC6-213ENST00000462730 FAM161AQ3B820 660 aa18.24■□□□□ 0.51
HDAC6-213ENST00000462730 SLC52A2Q9HAB3 445 aa18.24■□□□□ 0.51
HDAC6-213ENST00000462730 WNK3Q9BYP7 1800 aa18.24■□□□□ 0.51
HDAC6-213ENST00000462730 DEKP35659 375 aaKnown RBP18.24■□□□□ 0.51
HDAC6-213ENST00000462730 CACNA1FO60840 1977 aa18.22■□□□□ 0.51
HDAC6-213ENST00000462730 NUTM2BA6NNL0 878 aaPredicted RBP18.22■□□□□ 0.51
HDAC6-213ENST00000462730 NUTM2EB1AL46 878 aaPredicted RBP18.22■□□□□ 0.51
HDAC6-213ENST00000462730 NUTM2AQ8IVF1 878 aaPredicted RBP18.22■□□□□ 0.51
HDAC6-213ENST00000462730 SMC5Q8IY18 1101 aa18.22■□□□□ 0.51
HDAC6-213ENST00000462730 DISP2A7MBM2 1401 aa18.22■□□□□ 0.51
HDAC6-213ENST00000462730 HOXB7P09629 217 aa18.22■□□□□ 0.51
HDAC6-213ENST00000462730 NBR1Q14596 966 aa18.22■□□□□ 0.51
HDAC6-213ENST00000462730 C8orf34Q49A92 452 aa18.22■□□□□ 0.51
HDAC6-213ENST00000462730 HDGFL1Q5TGJ6 251 aa18.22■□□□□ 0.51
HDAC6-213ENST00000462730 CERKQ8TCT0 537 aa18.22■□□□□ 0.51
HDAC6-213ENST00000462730 NWD2Q9ULI1 1742 aa18.21■□□□□ 0.51
HDAC6-213ENST00000462730 NFATC2IPQ8NCF5 419 aa18.21■□□□□ 0.51
HDAC6-213ENST00000462730 FLIIQ13045 1269 aa18.21■□□□□ 0.5
HDAC6-213ENST00000462730 ZBTB47Q9UFB7 747 aaPredicted RBP18.21■□□□□ 0.5
HDAC6-213ENST00000462730 F6X3S4 739 aa18.2■□□□□ 0.5
HDAC6-213ENST00000462730 HEG1Q9ULI3 1381 aa18.2■□□□□ 0.5
HDAC6-213ENST00000462730 NPM2Q86SE8 214 aaKnown RBP18.19■□□□□ 0.5
HDAC6-213ENST00000462730 JCADQ9P266 1359 aa18.19■□□□□ 0.5
HDAC6-213ENST00000462730 C5P01031 1676 aa18.19■□□□□ 0.5
HDAC6-213ENST00000462730 TOGARAM1Q9Y4F4 1720 aa18.19■□□□□ 0.5
HDAC6-213ENST00000462730 EIF2S2P20042 333 aaKnown RBP18.19■□□□□ 0.5
HDAC6-213ENST00000462730 SLC39A6Q13433 755 aa18.19■□□□□ 0.5
HDAC6-213ENST00000462730 ZNF790Q6PG37 636 aa18.19■□□□□ 0.5
HDAC6-213ENST00000462730 SLC4A10Q6U841 1118 aa18.19■□□□□ 0.5
HDAC6-213ENST00000462730 DDX54Q8TDD1 881 aaKnown RBP18.19■□□□□ 0.5
HDAC6-213ENST00000462730 CCT4P50991 539 aaKnown RBP18.18■□□□□ 0.5
HDAC6-213ENST00000462730 FKBP5Q13451 457 aaPredicted RBP18.18■□□□□ 0.5
HDAC6-213ENST00000462730 SLIT2O94813 1529 aa18.18■□□□□ 0.5
HDAC6-213ENST00000462730 GIGYF1O75420 1035 aaPredicted RBP18.17■□□□□ 0.5
HDAC6-213ENST00000462730 CABP4P57796 275 aa18.17■□□□□ 0.5
HDAC6-213ENST00000462730 SIRT2Q8IXJ6 389 aa18.17■□□□□ 0.5
HDAC6-213ENST00000462730 NKX1-1Q15270 411 aaPredicted RBP18.17■□□□□ 0.5
HDAC6-213ENST00000462730 NUCB1Q02818 461 aa18.16■□□□□ 0.5
HDAC6-213ENST00000462730 MEIS3Q99687 375 aa18.16■□□□□ 0.5
HDAC6-213ENST00000462730 PAPPAQ13219 1627 aa18.16■□□□□ 0.5
HDAC6-213ENST00000462730 GLI3P10071 1580 aa18.16■□□□□ 0.5
HDAC6-213ENST00000462730 PRAMEF22A3QJZ6 481 aa18.15■□□□□ 0.5
HDAC6-213ENST00000462730 GCC1Q96CN9 775 aa18.15■□□□□ 0.5
HDAC6-213ENST00000462730 CHMP4AQ9BY43 222 aa18.15■□□□□ 0.5
HDAC6-213ENST00000462730 CHPF2Q9P2E5 772 aa18.15■□□□□ 0.5
HDAC6-213ENST00000462730 N4BP2Q86UW6 1770 aaPredicted RBP18.15■□□□□ 0.5
HDAC6-213ENST00000462730 ATP10DQ9P241 1426 aa18.15■□□□□ 0.5
HDAC6-213ENST00000462730 TTC5Q8N0Z6 440 aa18.14■□□□□ 0.49
HDAC6-213ENST00000462730 TNS2Q63HR2 1409 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms