RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 GNPATO15228 680 aa22.09■■□□□ 1.13
COL7A1-204ENST00000462475 KDM6AO15550 1401 aaPredicted RBP22.08■■□□□ 1.13
COL7A1-204ENST00000462475 GRIN3BO60391 1043 aa22.08■■□□□ 1.13
COL7A1-204ENST00000462475 MORC1Q86VD1 984 aa22.07■■□□□ 1.12
COL7A1-204ENST00000462475 AEBP1Q8IUX7 1158 aa22.07■■□□□ 1.12
COL7A1-204ENST00000462475 PLEKHO1Q53GL0 409 aaPredicted RBP22.06■■□□□ 1.12
COL7A1-204ENST00000462475 ZNF530Q6P9A1 599 aaPredicted RBP22.06■■□□□ 1.12
COL7A1-204ENST00000462475 SLC4A9Q96Q91 983 aa22.06■■□□□ 1.12
COL7A1-204ENST00000462475 ERVV-2B6SEH9 535 aa22.05■■□□□ 1.12
COL7A1-204ENST00000462475 C1QTNF8P60827 252 aa22.05■■□□□ 1.12
COL7A1-204ENST00000462475 DCAF5Q96JK2 942 aa22.05■■□□□ 1.12
COL7A1-204ENST00000462475 HSP90AB1P08238 724 aaKnown RBP22.04■■□□□ 1.12
COL7A1-204ENST00000462475 AMOTQ4VCS5 1084 aa22.02■■□□□ 1.12
COL7A1-204ENST00000462475 RBM42Q9BTD8 480 aaKnown RBP22.02■■□□□ 1.12
COL7A1-204ENST00000462475 WWC3Q9ULE0 1092 aa22.02■■□□□ 1.12
COL7A1-204ENST00000462475 KNSTRNQ9Y448 316 aa22.02■■□□□ 1.12
COL7A1-204ENST00000462475 GIGYF1O75420 1035 aaPredicted RBP22.01■■□□□ 1.11
COL7A1-204ENST00000462475 SENP3-EIF4A1A0A087X0R7 540 aa22■■□□□ 1.11
COL7A1-204ENST00000462475 CABP4P57796 275 aa22■■□□□ 1.11
COL7A1-204ENST00000462475 SULT6B1Q6IMI4 303 aa22■■□□□ 1.11
COL7A1-204ENST00000462475 ZNF831Q5JPB2 1677 aa22■■□□□ 1.11
COL7A1-204ENST00000462475 MMP10P09238 476 aa21.99■■□□□ 1.11
COL7A1-204ENST00000462475 IL13P35225 146 aa21.99■■□□□ 1.11
COL7A1-204ENST00000462475 AMER1Q5JTC6 1135 aaPredicted RBP21.99■■□□□ 1.11
COL7A1-204ENST00000462475 RTCBQ9Y3I0 505 aaKnown RBP21.99■■□□□ 1.11
COL7A1-204ENST00000462475 KIF7Q2M1P5 1343 aa21.99■■□□□ 1.11
COL7A1-204ENST00000462475 ATP10DQ9P241 1426 aa21.98■■□□□ 1.11
COL7A1-204ENST00000462475 COL5A3P25940 1745 aaPredicted RBP21.98■■□□□ 1.11
COL7A1-204ENST00000462475 MTHFSP49914 203 aa21.98■■□□□ 1.11
COL7A1-204ENST00000462475 C1orf141Q5JVX7 400 aa21.98■■□□□ 1.11
COL7A1-204ENST00000462475 CNTNAP4Q9C0A0 1308 aa21.98■■□□□ 1.11
COL7A1-204ENST00000462475 TRAPPC3LQ5T215 181 aa21.97■■□□□ 1.11
COL7A1-204ENST00000462475 RC3H1Q5TC82 1133 aaKnown RBP21.96■■□□□ 1.11
COL7A1-204ENST00000462475 ADCY9O60503 1353 aa21.96■■□□□ 1.11
COL7A1-204ENST00000462475 CICQ96RK0 1608 aaPredicted RBP21.95■■□□□ 1.1
COL7A1-204ENST00000462475 ARHGEF1Q92888 912 aaKnown RBP21.95■■□□□ 1.1
COL7A1-204ENST00000462475 PTCD1O75127 700 aaKnown RBP21.94■■□□□ 1.1
COL7A1-204ENST00000462475 NFATC2IPQ8NCF5 419 aa21.94■■□□□ 1.1
COL7A1-204ENST00000462475 PXDNLA1KZ92 1463 aa21.94■■□□□ 1.1
COL7A1-204ENST00000462475 RPS6KA4O75676 772 aa21.93■■□□□ 1.1
COL7A1-204ENST00000462475 ADRA2BP18089 450 aa21.93■■□□□ 1.1
COL7A1-204ENST00000462475 C10orf71Q711Q0 1435 aa21.92■■□□□ 1.1
COL7A1-204ENST00000462475 GYS1P13807 737 aa21.92■■□□□ 1.1
COL7A1-204ENST00000462475 NLGN1Q8N2Q7 840 aa21.92■■□□□ 1.1
COL7A1-204ENST00000462475 C4AP0C0L4 1744 aa21.91■■□□□ 1.1
COL7A1-204ENST00000462475 KIAA1551Q9HCM1 1747 aa21.91■■□□□ 1.1
COL7A1-204ENST00000462475 RFC4P35249 363 aa21.9■■□□□ 1.1
COL7A1-204ENST00000462475 CRKLP46109 303 aaKnown RBP21.9■■□□□ 1.1
COL7A1-204ENST00000462475 MYH14Q7Z406 1995 aaKnown RBP21.9■■□□□ 1.1
COL7A1-204ENST00000462475 KIF13BQ9NQT8 1826 aa21.9■■□□□ 1.1
COL7A1-204ENST00000462475 TJP1Q07157 1748 aa21.89■■□□□ 1.1
COL7A1-204ENST00000462475 SCN11AQ9UI33 1791 aa21.89■■□□□ 1.09
COL7A1-204ENST00000462475 PER1O15534 1290 aaPredicted RBP21.88■■□□□ 1.09
COL7A1-204ENST00000462475 HMOX1P09601 288 aa21.88■■□□□ 1.09
COL7A1-204ENST00000462475 AKAP4Q5JQC9 854 aa21.88■■□□□ 1.09
COL7A1-204ENST00000462475 ZNF526Q8TF50 670 aaPredicted RBP21.88■■□□□ 1.09
COL7A1-204ENST00000462475 CC2D1BQ5T0F9 858 aaKnown RBP21.87■■□□□ 1.09
COL7A1-204ENST00000462475 GPBP1L1Q9HC44 474 aaPredicted RBP21.87■■□□□ 1.09
COL7A1-204ENST00000462475 SRP68Q9UHB9 627 aaKnown RBP21.87■■□□□ 1.09
COL7A1-204ENST00000462475 CEP350Q5VT06 3117 aa21.87■■□□□ 1.09
COL7A1-204ENST00000462475 MRC1P22897 1456 aa21.86■■□□□ 1.09
COL7A1-204ENST00000462475 A0A0G2JLW4 131 aa21.86■■□□□ 1.09
COL7A1-204ENST00000462475 TGFB2P61812 414 aa21.86■■□□□ 1.09
COL7A1-204ENST00000462475 SLC52A2Q9HAB3 445 aa21.86■■□□□ 1.09
COL7A1-204ENST00000462475 LGR6Q9HBX8 967 aa21.86■■□□□ 1.09
COL7A1-204ENST00000462475 CCDC87Q9NVE4 849 aa21.86■■□□□ 1.09
COL7A1-204ENST00000462475 N4BP2Q86UW6 1770 aaPredicted RBP21.85■■□□□ 1.09
COL7A1-204ENST00000462475 PARP3Q9Y6F1 533 aa21.85■■□□□ 1.09
COL7A1-204ENST00000462475 USP42Q9H9J4 1324 aaKnown RBP21.84■■□□□ 1.09
COL7A1-204ENST00000462475 DPEP1P16444 411 aa21.84■■□□□ 1.09
COL7A1-204ENST00000462475 INTS5Q6P9B9 1019 aaKnown RBP21.84■■□□□ 1.09
COL7A1-204ENST00000462475 DNAJC10Q8IXB1 793 aa21.84■■□□□ 1.09
COL7A1-204ENST00000462475 BCS1LQ9Y276 419 aa21.84■■□□□ 1.09
COL7A1-204ENST00000462475 RNMTO43148 476 aaKnown RBP21.83■■□□□ 1.09
COL7A1-204ENST00000462475 FKBP8Q14318 412 aa21.83■■□□□ 1.09
COL7A1-204ENST00000462475 DIAPH1O60610 1272 aaKnown RBP21.82■■□□□ 1.08
COL7A1-204ENST00000462475 DDR1Q08345 913 aa21.82■■□□□ 1.08
COL7A1-204ENST00000462475 SLC39A6Q13433 755 aa21.82■■□□□ 1.08
COL7A1-204ENST00000462475 MTHFSDQ2M296 383 aaKnown RBP21.82■■□□□ 1.08
COL7A1-204ENST00000462475 ADAMTS7Q9UKP4 1686 aa21.82■■□□□ 1.08
COL7A1-204ENST00000462475 KCPQ6ZWJ8 1503 aa21.81■■□□□ 1.08
COL7A1-204ENST00000462475 COL3A1P02461 1466 aaPredicted RBP21.81■■□□□ 1.08
COL7A1-204ENST00000462475 CNGB1Q14028 1251 aaPredicted RBP21.79■■□□□ 1.08
COL7A1-204ENST00000462475 SOS1Q07889 1333 aaPredicted RBP21.79■■□□□ 1.08
COL7A1-204ENST00000462475 FCHSD2O94868 740 aa21.78■■□□□ 1.08
COL7A1-204ENST00000462475 CYP19A1P11511 503 aaPredicted RBP21.78■■□□□ 1.08
COL7A1-204ENST00000462475 KCNA3P22001 575 aa21.78■■□□□ 1.08
COL7A1-204ENST00000462475 NPC1L1Q9UHC9 1359 aa21.77■■□□□ 1.08
COL7A1-204ENST00000462475 BRCA1P38398 1863 aaKnown RBP21.77■■□□□ 1.08
COL7A1-204ENST00000462475 USPL1Q5W0Q7 1092 aa21.76■■□□□ 1.07
COL7A1-204ENST00000462475 ARHGAP27Q6ZUM4 889 aa21.76■■□□□ 1.07
COL7A1-204ENST00000462475 ZBTB1Q9Y2K1 713 aa21.76■■□□□ 1.07
COL7A1-204ENST00000462475 POLRMTO00411 1230 aaKnown RBP21.75■■□□□ 1.07
COL7A1-204ENST00000462475 KIF3CO14782 793 aa21.75■■□□□ 1.07
COL7A1-204ENST00000462475 COL15A1P39059 1388 aa21.74■■□□□ 1.07
COL7A1-204ENST00000462475 VIRMAQ69YN4 1812 aaKnown RBP21.74■■□□□ 1.07
COL7A1-204ENST00000462475 ZPR1O75312 459 aa21.74■■□□□ 1.07
COL7A1-204ENST00000462475 TM4SF1P30408 202 aa21.74■■□□□ 1.07
COL7A1-204ENST00000462475 U2SURPO15042 1029 aaKnown RBP21.73■■□□□ 1.07
COL7A1-204ENST00000462475 UBR2Q8IWV8 1755 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms