RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 PCNTO95613 3336 aa16.98■□□□□ 0.31
HDAC4-207ENST00000461113 C4BP0C0L5 1744 aa16.97■□□□□ 0.31
HDAC4-207ENST00000461113 LINC00116Q8NCU8 138 aa16.97■□□□□ 0.31
HDAC4-207ENST00000461113 RAPGEF4Q8WZA2 1011 aa16.97■□□□□ 0.31
HDAC4-207ENST00000461113 FAM208AQ9UK61 1670 aaKnown RBP16.97■□□□□ 0.31
HDAC4-207ENST00000461113 KDM2BQ8NHM5 1336 aa16.96■□□□□ 0.31
HDAC4-207ENST00000461113 DPEP1P16444 411 aa16.96■□□□□ 0.31
HDAC4-207ENST00000461113 DDX10Q13206 875 aaKnown RBP16.96■□□□□ 0.31
HDAC4-207ENST00000461113 PLEKHG2Q9H7P9 1386 aa16.95■□□□□ 0.3
HDAC4-207ENST00000461113 PER1O15534 1290 aaPredicted RBP16.95■□□□□ 0.3
HDAC4-207ENST00000461113 TATP17735 454 aaPredicted RBP16.95■□□□□ 0.3
HDAC4-207ENST00000461113 TNNT2P45379 298 aaPredicted RBP16.95■□□□□ 0.3
HDAC4-207ENST00000461113 CNGB1Q14028 1251 aaPredicted RBP16.95■□□□□ 0.3
HDAC4-207ENST00000461113 AMER1Q5JTC6 1135 aaPredicted RBP16.95■□□□□ 0.3
HDAC4-207ENST00000461113 CC2D1BQ5T0F9 858 aaKnown RBP16.95■□□□□ 0.3
HDAC4-207ENST00000461113 SMC1BQ8NDV3 1235 aa16.95■□□□□ 0.3
HDAC4-207ENST00000461113 TOGARAM1Q9Y4F4 1720 aa16.95■□□□□ 0.3
HDAC4-207ENST00000461113 KCPQ6ZWJ8 1503 aa16.95■□□□□ 0.3
HDAC4-207ENST00000461113 PCDH11XQ9BZA7 1347 aa16.95■□□□□ 0.3
HDAC4-207ENST00000461113 PCDH11YQ9BZA8 1340 aa16.95■□□□□ 0.3
HDAC4-207ENST00000461113 GNPATO15228 680 aa16.94■□□□□ 0.3
HDAC4-207ENST00000461113 PPM1GO15355 546 aaPredicted RBP16.94■□□□□ 0.3
HDAC4-207ENST00000461113 PIGBQ92521 554 aa16.94■□□□□ 0.3
HDAC4-207ENST00000461113 RRS1Q15050 365 aaKnown RBP16.93■□□□□ 0.3
HDAC4-207ENST00000461113 NPC1L1Q9UHC9 1359 aa16.92■□□□□ 0.3
HDAC4-207ENST00000461113 LOC102724428A0A0B4J2F2 783 aa16.92■□□□□ 0.3
HDAC4-207ENST00000461113 CYP27B1O15528 508 aa16.92■□□□□ 0.3
HDAC4-207ENST00000461113 SIK1P57059 783 aa16.92■□□□□ 0.3
HDAC4-207ENST00000461113 RNF181Q9P0P0 153 aa16.92■□□□□ 0.3
HDAC4-207ENST00000461113 TAF1LQ8IZX4 1826 aa16.91■□□□□ 0.3
HDAC4-207ENST00000461113 C10orf71Q711Q0 1435 aa16.91■□□□□ 0.3
HDAC4-207ENST00000461113 RTL1A6NKG5 1358 aa16.9■□□□□ 0.3
HDAC4-207ENST00000461113 KIF24Q5T7B8 1368 aa16.9■□□□□ 0.3
HDAC4-207ENST00000461113 ITPK1Q13572 414 aa16.9■□□□□ 0.3
HDAC4-207ENST00000461113 CCDC87Q9NVE4 849 aa16.9■□□□□ 0.3
HDAC4-207ENST00000461113 UBR3Q6ZT12 1888 aa16.89■□□□□ 0.29
HDAC4-207ENST00000461113 KCNA3P22001 575 aa16.89■□□□□ 0.29
HDAC4-207ENST00000461113 NLGN1Q8N2Q7 840 aa16.89■□□□□ 0.29
HDAC4-207ENST00000461113 FLT4P35916 1363 aa16.89■□□□□ 0.29
HDAC4-207ENST00000461113 SMG6Q86US8 1419 aaKnown RBP16.88■□□□□ 0.29
HDAC4-207ENST00000461113 KIAA1551Q9HCM1 1747 aa16.88■□□□□ 0.29
HDAC4-207ENST00000461113 ATP6V1AP38606 617 aa16.88■□□□□ 0.29
HDAC4-207ENST00000461113 KIF20BQ96Q89 1820 aa16.88■□□□□ 0.29
HDAC4-207ENST00000461113 N4BP2Q86UW6 1770 aaPredicted RBP16.87■□□□□ 0.29
HDAC4-207ENST00000461113 TRAPPC3LQ5T215 181 aa16.87■□□□□ 0.29
HDAC4-207ENST00000461113 DCAF5Q96JK2 942 aa16.87■□□□□ 0.29
HDAC4-207ENST00000461113 PIM2Q9P1W9 311 aa16.87■□□□□ 0.29
HDAC4-207ENST00000461113 POLKQ9UBT6 870 aa16.87■□□□□ 0.29
HDAC4-207ENST00000461113 EMILIN1Q9Y6C2 1016 aa16.87■□□□□ 0.29
HDAC4-207ENST00000461113 DALRD3Q5D0E6 543 aaKnown RBP16.86■□□□□ 0.29
HDAC4-207ENST00000461113 ASAP1Q9ULH1 1129 aa16.86■□□□□ 0.29
HDAC4-207ENST00000461113 PARP3Q9Y6F1 533 aa16.86■□□□□ 0.29
HDAC4-207ENST00000461113 RGPD2P0DJD1 1756 aa16.86■□□□□ 0.29
HDAC4-207ENST00000461113 GYS1P13807 737 aa16.84■□□□□ 0.29
HDAC4-207ENST00000461113 HSP90AB2PQ58FF8 381 aa16.84■□□□□ 0.29
HDAC4-207ENST00000461113 RTCBQ9Y3I0 505 aaKnown RBP16.84■□□□□ 0.29
HDAC4-207ENST00000461113 INSRP06213 1382 aa16.84■□□□□ 0.29
HDAC4-207ENST00000461113 KIF13BQ9NQT8 1826 aa16.84■□□□□ 0.29
HDAC4-207ENST00000461113 NKX1-1Q15270 411 aaPredicted RBP16.83■□□□□ 0.28
HDAC4-207ENST00000461113 RALBP1Q15311 655 aa16.83■□□□□ 0.28
HDAC4-207ENST00000461113 ARHGEF1Q92888 912 aaKnown RBP16.83■□□□□ 0.28
HDAC4-207ENST00000461113 CFAP53Q96M91 514 aa16.83■□□□□ 0.28
HDAC4-207ENST00000461113 TMOD3Q9NYL9 352 aa16.83■□□□□ 0.28
HDAC4-207ENST00000461113 VEGFAP15692 232 aaPredicted RBP16.82■□□□□ 0.28
HDAC4-207ENST00000461113 MTHFSP49914 203 aa16.82■□□□□ 0.28
HDAC4-207ENST00000461113 CHRNA5P30532 468 aa16.8■□□□□ 0.28
HDAC4-207ENST00000461113 RFC4P35249 363 aa16.8■□□□□ 0.28
HDAC4-207ENST00000461113 ATG3Q9NT62 314 aa16.8■□□□□ 0.28
HDAC4-207ENST00000461113 PKD1L3Q7Z443 1732 aa16.79■□□□□ 0.28
HDAC4-207ENST00000461113 FOXN1O15353 648 aa16.79■□□□□ 0.28
HDAC4-207ENST00000461113 RASSF7Q02833 373 aa16.79■□□□□ 0.28
HDAC4-207ENST00000461113 MKRN1Q9UHC7 482 aaKnown RBP16.79■□□□□ 0.28
HDAC4-207ENST00000461113 MAP2P11137 1827 aaKnown RBP16.79■□□□□ 0.28
HDAC4-207ENST00000461113 GLTPD2A6NH11 291 aa16.78■□□□□ 0.28
HDAC4-207ENST00000461113 ADRA2BP18089 450 aa16.78■□□□□ 0.28
HDAC4-207ENST00000461113 SPG7Q9UQ90 795 aa16.78■□□□□ 0.28
HDAC4-207ENST00000461113 C4AP0C0L4 1744 aa16.78■□□□□ 0.28
HDAC4-207ENST00000461113 ANKRD26Q9UPS8 1709 aa16.78■□□□□ 0.28
HDAC4-207ENST00000461113 TNRC6CQ9HCJ0 1690 aaKnown RBP16.78■□□□□ 0.28
HDAC4-207ENST00000461113 PPP2R1AP30153 589 aa16.77■□□□□ 0.28
HDAC4-207ENST00000461113 SLC4A9Q96Q91 983 aa16.77■□□□□ 0.28
HDAC4-207ENST00000461113 PCDH10Q9P2E7 1040 aa16.77■□□□□ 0.28
HDAC4-207ENST00000461113 ZC3H4Q9UPT8 1303 aaKnown RBP16.76■□□□□ 0.27
HDAC4-207ENST00000461113 ITGB4P16144 1822 aa16.76■□□□□ 0.27
HDAC4-207ENST00000461113 DIAPH1O60610 1272 aaKnown RBP16.76■□□□□ 0.27
HDAC4-207ENST00000461113 EIF4A2Q14240 407 aaKnown RBP16.76■□□□□ 0.27
HDAC4-207ENST00000461113 FAM161AQ3B820 660 aa16.76■□□□□ 0.27
HDAC4-207ENST00000461113 RC3H1Q5TC82 1133 aaKnown RBP16.76■□□□□ 0.27
HDAC4-207ENST00000461113 RBM42Q9BTD8 480 aaKnown RBP16.76■□□□□ 0.27
HDAC4-207ENST00000461113 PRDM10Q9NQV6 1147 aa16.76■□□□□ 0.27
HDAC4-207ENST00000461113 NUDCQ9Y266 331 aa16.76■□□□□ 0.27
HDAC4-207ENST00000461113 ANP32CO43423 234 aa16.75■□□□□ 0.27
HDAC4-207ENST00000461113 RPS6KA4O75676 772 aa16.75■□□□□ 0.27
HDAC4-207ENST00000461113 LMNB1P20700 586 aa16.74■□□□□ 0.27
HDAC4-207ENST00000461113 DDR1Q08345 913 aa16.74■□□□□ 0.27
HDAC4-207ENST00000461113 CREBZFQ9NS37 354 aa16.74■□□□□ 0.27
HDAC4-207ENST00000461113 SRP68Q9UHB9 627 aaKnown RBP16.74■□□□□ 0.27
HDAC4-207ENST00000461113 KDRP35968 1356 aa16.74■□□□□ 0.27
HDAC4-207ENST00000461113 BRCA1P38398 1863 aaKnown RBP16.73■□□□□ 0.27
HDAC4-207ENST00000461113 CNTNAP4Q9C0A0 1308 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms