RNA–Protein interactions for RNA: ENST00000459670.2

NEDD9-205, Transcript of neural precursor cell expressed, developmentally down-regulated 9, human

TSL 3

Gene NEDD9, Length 614 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NEDD9-205	ENST00000459670	RTF1	Q92541	710 aa	Known RBP	13.56	□□□□□ -0.24
NEDD9-205	ENST00000459670	COL5A3	P25940	1745 aa	Predicted RBP	13.56	□□□□□ -0.24
NEDD9-205	ENST00000459670	BCL9	O00512	1426 aa		13.56	□□□□□ -0.24
NEDD9-205	ENST00000459670	EVA1C	P58658	441 aa		13.55	□□□□□ -0.24
NEDD9-205	ENST00000459670	TAF7	Q15545	349 aa	Predicted RBP	13.55	□□□□□ -0.24
NEDD9-205	ENST00000459670	C1orf141	Q5JVX7	400 aa		13.55	□□□□□ -0.24
NEDD9-205	ENST00000459670	ZNF428	Q96B54	188 aa		13.55	□□□□□ -0.24
NEDD9-205	ENST00000459670	DCAF5	Q96JK2	942 aa		13.55	□□□□□ -0.24
NEDD9-205	ENST00000459670	LY75	O60449	1722 aa		13.54	□□□□□ -0.24
NEDD9-205	ENST00000459670	KRT24	Q2M2I5	525 aa		13.54	□□□□□ -0.24
NEDD9-205	ENST00000459670	C8orf37	Q96NL8	207 aa		13.54	□□□□□ -0.24
NEDD9-205	ENST00000459670	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.54	□□□□□ -0.24
NEDD9-205	ENST00000459670	SLC52A2	Q9HAB3	445 aa		13.54	□□□□□ -0.24
NEDD9-205	ENST00000459670	BTAF1	O14981	1849 aa		13.54	□□□□□ -0.24
NEDD9-205	ENST00000459670	SOS1	Q07889	1333 aa	Predicted RBP	13.54	□□□□□ -0.24
NEDD9-205	ENST00000459670	SOCS7	O14512	581 aa		13.53	□□□□□ -0.24
NEDD9-205	ENST00000459670	BCAR3	O75815	825 aa		13.53	□□□□□ -0.24
NEDD9-205	ENST00000459670	HSP90AB1	P08238	724 aa	Known RBP	13.53	□□□□□ -0.24
NEDD9-205	ENST00000459670	ALDH1L2	Q3SY69	923 aa		13.53	□□□□□ -0.24
NEDD9-205	ENST00000459670	SSH1	Q8WYL5	1049 aa		13.53	□□□□□ -0.24
NEDD9-205	ENST00000459670	GTF3C3	Q9Y5Q9	886 aa		13.53	□□□□□ -0.24
NEDD9-205	ENST00000459670	AFF2	P51816	1311 aa		13.53	□□□□□ -0.24
NEDD9-205	ENST00000459670	NUP188	Q5SRE5	1749 aa		13.53	□□□□□ -0.24
NEDD9-205	ENST00000459670	EIF4A1	P60842	406 aa	Known RBP	13.52	□□□□□ -0.25
NEDD9-205	ENST00000459670	TSPYL4	Q9UJ04	414 aa		13.52	□□□□□ -0.25
NEDD9-205	ENST00000459670	KCNQ3	O43525	872 aa		13.51	□□□□□ -0.25
NEDD9-205	ENST00000459670	ONECUT3	O60422	494 aa	Predicted RBP	13.51	□□□□□ -0.25
NEDD9-205	ENST00000459670	TWISTNB	Q3B726	338 aa	Predicted RBP	13.51	□□□□□ -0.25
NEDD9-205	ENST00000459670	NGLY1	Q96IV0	654 aa		13.51	□□□□□ -0.25
NEDD9-205	ENST00000459670	MIS18A	Q9NYP9	233 aa		13.51	□□□□□ -0.25
NEDD9-205	ENST00000459670	ERVV-2	B6SEH9	535 aa		13.5	□□□□□ -0.25
NEDD9-205	ENST00000459670	HOXB7	P09629	217 aa		13.5	□□□□□ -0.25
NEDD9-205	ENST00000459670	USP35	Q9P2H5	1018 aa		13.5	□□□□□ -0.25
NEDD9-205	ENST00000459670	USP21	Q9UK80	565 aa		13.5	□□□□□ -0.25
NEDD9-205	ENST00000459670	TAF1L	Q8IZX4	1826 aa		13.5	□□□□□ -0.25
NEDD9-205	ENST00000459670	C20orf194	Q5TEA3	1177 aa		13.49	□□□□□ -0.25
NEDD9-205	ENST00000459670	MRPL50	Q8N5N7	158 aa	Known RBP	13.49	□□□□□ -0.25
NEDD9-205	ENST00000459670	LAS1L	Q9Y4W2	734 aa	Known RBP	13.49	□□□□□ -0.25
NEDD9-205	ENST00000459670	ARFGEF2	Q9Y6D5	1785 aa		13.49	□□□□□ -0.25
NEDD9-205	ENST00000459670	TEF	Q10587	303 aa		13.48	□□□□□ -0.25
NEDD9-205	ENST00000459670	ERICH6B	Q5W0A0	696 aa		13.48	□□□□□ -0.25
NEDD9-205	ENST00000459670	MARCH10	Q8NA82	808 aa	Predicted RBP	13.48	□□□□□ -0.25
NEDD9-205	ENST00000459670	PXDNL	A1KZ92	1463 aa		13.48	□□□□□ -0.25
NEDD9-205	ENST00000459670	BTBD11	A6QL63	1104 aa		13.47	□□□□□ -0.25
NEDD9-205	ENST00000459670	PLIN1	O60240	522 aa		13.47	□□□□□ -0.25
NEDD9-205	ENST00000459670	ZNF790	Q6PG37	636 aa		13.47	□□□□□ -0.25
NEDD9-205	ENST00000459670	TNN	Q9UQP3	1299 aa		13.47	□□□□□ -0.25
NEDD9-205	ENST00000459670	TNS1	Q9HBL0	1735 aa	Known RBP	13.47	□□□□□ -0.25
NEDD9-205	ENST00000459670	MYH14	Q7Z406	1995 aa	Known RBP	13.47	□□□□□ -0.25
NEDD9-205	ENST00000459670	KIF16B	Q96L93	1317 aa		13.46	□□□□□ -0.25
NEDD9-205	ENST00000459670	NFATC2IP	Q8NCF5	419 aa		13.46	□□□□□ -0.25
NEDD9-205	ENST00000459670	GJD4	Q96KN9	370 aa	Predicted RBP	13.46	□□□□□ -0.25
NEDD9-205	ENST00000459670	BCL2L13	Q9BXK5	485 aa		13.46	□□□□□ -0.25
NEDD9-205	ENST00000459670	RGPD3	A6NKT7	1758 aa	Predicted RBP	13.45	□□□□□ -0.26
NEDD9-205	ENST00000459670	RGPD4	Q7Z3J3	1758 aa		13.45	□□□□□ -0.26
NEDD9-205	ENST00000459670	ABCC4	O15439	1325 aa		13.45	□□□□□ -0.26
NEDD9-205	ENST00000459670	KAT6B	Q8WYB5	2073 aa		13.45	□□□□□ -0.26
NEDD9-205	ENST00000459670	GIGYF1	O75420	1035 aa	Predicted RBP	13.45	□□□□□ -0.26
NEDD9-205	ENST00000459670	RLBP1	P12271	317 aa		13.45	□□□□□ -0.26
NEDD9-205	ENST00000459670	FKBP8	Q14318	412 aa		13.45	□□□□□ -0.26
NEDD9-205	ENST00000459670	PDE3A	Q14432	1141 aa		13.45	□□□□□ -0.26
NEDD9-205	ENST00000459670	DDB1	Q16531	1140 aa		13.45	□□□□□ -0.26
NEDD9-205	ENST00000459670	FAM98C	Q17RN3	349 aa	Known RBP	13.45	□□□□□ -0.26
NEDD9-205	ENST00000459670	TRPC5	Q9UL62	973 aa	Predicted RBP	13.45	□□□□□ -0.26
NEDD9-205	ENST00000459670	EXOC5	O00471	708 aa		13.44	□□□□□ -0.26
NEDD9-205	ENST00000459670	TRIM27	P14373	513 aa		13.44	□□□□□ -0.26
NEDD9-205	ENST00000459670	IRX6	P78412	446 aa	Predicted RBP	13.44	□□□□□ -0.26
NEDD9-205	ENST00000459670	LRP10	Q7Z4F1	713 aa		13.44	□□□□□ -0.26
NEDD9-205	ENST00000459670	DDX54	Q8TDD1	881 aa	Known RBP	13.44	□□□□□ -0.26
NEDD9-205	ENST00000459670	ARHGAP45	Q92619	1136 aa		13.44	□□□□□ -0.26
NEDD9-205	ENST00000459670	ZNF496	Q96IT1	587 aa	Predicted RBP	13.44	□□□□□ -0.26
NEDD9-205	ENST00000459670	SMC4	Q9NTJ3	1288 aa		13.44	□□□□□ -0.26
NEDD9-205	ENST00000459670	ANKRD36C	Q5JPF3	1778 aa		13.44	□□□□□ -0.26
NEDD9-205	ENST00000459670	BCOR	Q6W2J9	1755 aa		13.43	□□□□□ -0.26
NEDD9-205	ENST00000459670	ELL2	O00472	640 aa	Predicted RBP	13.43	□□□□□ -0.26
NEDD9-205	ENST00000459670	SLC39A6	Q13433	755 aa		13.43	□□□□□ -0.26
NEDD9-205	ENST00000459670	EP400	Q96L91	3159 aa		13.42	□□□□□ -0.26
NEDD9-205	ENST00000459670	PRAMEF22	A3QJZ6	481 aa		13.42	□□□□□ -0.26
NEDD9-205	ENST00000459670	CABP4	P57796	275 aa		13.42	□□□□□ -0.26
NEDD9-205	ENST00000459670	MEX3C	Q5U5Q3	659 aa	Known RBP	13.42	□□□□□ -0.26
NEDD9-205	ENST00000459670	ATF7IP	Q6VMQ6	1270 aa		13.42	□□□□□ -0.26
NEDD9-205	ENST00000459670	PIGB	Q92521	554 aa		13.42	□□□□□ -0.26
NEDD9-205	ENST00000459670	AFDN	P55196	1824 aa	Known RBP	13.41	□□□□□ -0.26
NEDD9-205	ENST00000459670	PDIA6	Q15084	440 aa		13.41	□□□□□ -0.26
NEDD9-205	ENST00000459670	CRBN	Q96SW2	442 aa		13.41	□□□□□ -0.26
NEDD9-205	ENST00000459670	RGS17	Q9UGC6	210 aa	Predicted RBP	13.41	□□□□□ -0.26
NEDD9-205	ENST00000459670	ZKSCAN2	Q63HK3	967 aa		13.4	□□□□□ -0.26
NEDD9-205	ENST00000459670	ILDR2	Q71H61	639 aa		13.4	□□□□□ -0.26
NEDD9-205	ENST00000459670	G2E3	Q7L622	706 aa		13.4	□□□□□ -0.26
NEDD9-205	ENST00000459670	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.4	□□□□□ -0.26
NEDD9-205	ENST00000459670	EXOC6	Q8TAG9	804 aa		13.4	□□□□□ -0.26
NEDD9-205	ENST00000459670	SLC4A9	Q96Q91	983 aa		13.4	□□□□□ -0.26
NEDD9-205	ENST00000459670	ATG3	Q9NT62	314 aa		13.4	□□□□□ -0.26
NEDD9-205	ENST00000459670	NOB1	Q9ULX3	412 aa	Known RBP	13.4	□□□□□ -0.26
NEDD9-205	ENST00000459670	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.4	□□□□□ -0.26
NEDD9-205	ENST00000459670	PTPRC	P08575	1304 aa		13.39	□□□□□ -0.27
NEDD9-205	ENST00000459670	NEFL	P07196	543 aa		13.39	□□□□□ -0.27
NEDD9-205	ENST00000459670	PANK1	Q8TE04	598 aa		13.39	□□□□□ -0.27
NEDD9-205	ENST00000459670	SCN7A	Q01118	1682 aa		13.39	□□□□□ -0.27
NEDD9-205	ENST00000459670	ATP10D	Q9P241	1426 aa		13.39	□□□□□ -0.27

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