RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 AKAP4Q5JQC9 854 aa24.09■■□□□ 1.45
MSH6-207ENST00000456246 COL23A1Q86Y22 540 aaPredicted RBP24.09■■□□□ 1.45
MSH6-207ENST00000456246 SYT17Q9BSW7 474 aa24.08■■□□□ 1.45
MSH6-207ENST00000456246 HMOX1P09601 288 aa24.06■■□□□ 1.44
MSH6-207ENST00000456246 ATP6V1AP38606 617 aa24.06■■□□□ 1.44
MSH6-207ENST00000456246 CNGB1Q14028 1251 aaPredicted RBP24.06■■□□□ 1.44
MSH6-207ENST00000456246 CFAP53Q96M91 514 aa24.06■■□□□ 1.44
MSH6-207ENST00000456246 UBR3Q6ZT12 1888 aa24.06■■□□□ 1.44
MSH6-207ENST00000456246 SSFA2P28290 1259 aa24.05■■□□□ 1.44
MSH6-207ENST00000456246 SCN11AQ9UI33 1791 aa24.05■■□□□ 1.44
MSH6-207ENST00000456246 LINC00116Q8NCU8 138 aa24.04■■□□□ 1.44
MSH6-207ENST00000456246 U2SURPO15042 1029 aaKnown RBP24.02■■□□□ 1.44
MSH6-207ENST00000456246 ITPK1Q13572 414 aa24.02■■□□□ 1.44
MSH6-207ENST00000456246 MRC1P22897 1456 aa24■■□□□ 1.43
MSH6-207ENST00000456246 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24■■□□□ 1.43
MSH6-207ENST00000456246 NFATC2IPQ8NCF5 419 aa24■■□□□ 1.43
MSH6-207ENST00000456246 RBM42Q9BTD8 480 aaKnown RBP24■■□□□ 1.43
MSH6-207ENST00000456246 GNPATO15228 680 aa23.99■■□□□ 1.43
MSH6-207ENST00000456246 SLC52A2Q9HAB3 445 aa23.99■■□□□ 1.43
MSH6-207ENST00000456246 NUDCQ9Y266 331 aa23.99■■□□□ 1.43
MSH6-207ENST00000456246 ADAMTS7Q9UKP4 1686 aa23.99■■□□□ 1.43
MSH6-207ENST00000456246 PHF14O94880 888 aa23.98■■□□□ 1.43
MSH6-207ENST00000456246 MTHFSDQ2M296 383 aaKnown RBP23.98■■□□□ 1.43
MSH6-207ENST00000456246 RC3H1Q5TC82 1133 aaKnown RBP23.98■■□□□ 1.43
MSH6-207ENST00000456246 CNTNAP4Q9C0A0 1308 aa23.98■■□□□ 1.43
MSH6-207ENST00000456246 COL5A3P25940 1745 aaPredicted RBP23.98■■□□□ 1.43
MSH6-207ENST00000456246 PPP2R1AP30153 589 aa23.97■■□□□ 1.43
MSH6-207ENST00000456246 GAS2L2Q8NHY3 880 aa23.97■■□□□ 1.43
MSH6-207ENST00000456246 CICQ96RK0 1608 aaPredicted RBP23.97■■□□□ 1.43
MSH6-207ENST00000456246 RNMTO43148 476 aaKnown RBP23.96■■□□□ 1.43
MSH6-207ENST00000456246 ADRA2BP18089 450 aa23.96■■□□□ 1.43
MSH6-207ENST00000456246 MSL1Q68DK7 614 aa23.96■■□□□ 1.43
MSH6-207ENST00000456246 KLHL34Q8N239 644 aa23.96■■□□□ 1.43
MSH6-207ENST00000456246 SLC4A9Q96Q91 983 aa23.96■■□□□ 1.43
MSH6-207ENST00000456246 RTCBQ9Y3I0 505 aaKnown RBP23.96■■□□□ 1.43
MSH6-207ENST00000456246 AMIGO3Q86WK7 504 aa23.95■■□□□ 1.42
MSH6-207ENST00000456246 VIRMAQ69YN4 1812 aaKnown RBP23.95■■□□□ 1.42
MSH6-207ENST00000456246 PTCD1O75127 700 aaKnown RBP23.94■■□□□ 1.42
MSH6-207ENST00000456246 LGR6Q9HBX8 967 aa23.93■■□□□ 1.42
MSH6-207ENST00000456246 GNAT3A8MTJ3 354 aa23.91■■□□□ 1.42
MSH6-207ENST00000456246 YY1P25490 414 aa23.91■■□□□ 1.42
MSH6-207ENST00000456246 TRAPPC3LQ5T215 181 aa23.91■■□□□ 1.42
MSH6-207ENST00000456246 RPS6KA4O75676 772 aa23.9■■□□□ 1.42
MSH6-207ENST00000456246 RSPH6AQ9H0K4 717 aa23.9■■□□□ 1.42
MSH6-207ENST00000456246 CD2APQ9Y5K6 639 aa23.9■■□□□ 1.42
MSH6-207ENST00000456246 TJP1Q07157 1748 aa23.9■■□□□ 1.42
MSH6-207ENST00000456246 PRKAR2BP31323 418 aa23.89■■□□□ 1.41
MSH6-207ENST00000456246 U2AF1L5P0DN76 240 aaPredicted RBP23.88■■□□□ 1.41
MSH6-207ENST00000456246 U2AF1Q01081 240 aaKnown RBP eCLIP23.88■■□□□ 1.41
MSH6-207ENST00000456246 FCHSD2O94868 740 aa23.87■■□□□ 1.41
MSH6-207ENST00000456246 CRKLP46109 303 aaKnown RBP23.87■■□□□ 1.41
MSH6-207ENST00000456246 TEFQ10587 303 aa23.87■■□□□ 1.41
MSH6-207ENST00000456246 SMIM5Q71RC9 77 aa23.87■■□□□ 1.41
MSH6-207ENST00000456246 MYH14Q7Z406 1995 aaKnown RBP23.87■■□□□ 1.41
MSH6-207ENST00000456246 GPR162Q16538 588 aa23.86■■□□□ 1.41
MSH6-207ENST00000456246 NLGN1Q8N2Q7 840 aa23.86■■□□□ 1.41
MSH6-207ENST00000456246 KCPQ6ZWJ8 1503 aa23.85■■□□□ 1.41
MSH6-207ENST00000456246 RFC4P35249 363 aa23.85■■□□□ 1.41
MSH6-207ENST00000456246 VSIG10Q8N0Z9 540 aa23.85■■□□□ 1.41
MSH6-207ENST00000456246 NLGN2Q8NFZ4 835 aa23.85■■□□□ 1.41
MSH6-207ENST00000456246 ARHGEF1Q92888 912 aaKnown RBP23.85■■□□□ 1.41
MSH6-207ENST00000456246 UBR2Q8IWV8 1755 aa23.84■■□□□ 1.41
MSH6-207ENST00000456246 TTC5Q8N0Z6 440 aa23.84■■□□□ 1.41
MSH6-207ENST00000456246 CEMIPQ8WUJ3 1361 aa23.83■■□□□ 1.41
MSH6-207ENST00000456246 SLC39A6Q13433 755 aa23.83■■□□□ 1.41
MSH6-207ENST00000456246 CHD4Q14839 1912 aa23.82■■□□□ 1.4
MSH6-207ENST00000456246 C4AP0C0L4 1744 aa23.82■■□□□ 1.4
MSH6-207ENST00000456246 IL17REQ8NFR9 667 aa23.82■■□□□ 1.4
MSH6-207ENST00000456246 PHACTR3Q96KR7 559 aa23.82■■□□□ 1.4
MSH6-207ENST00000456246 SIPA1L3O60292 1781 aaPredicted RBP23.81■■□□□ 1.4
MSH6-207ENST00000456246 MMP10P09238 476 aa23.81■■□□□ 1.4
MSH6-207ENST00000456246 DNAJC10Q8IXB1 793 aa23.81■■□□□ 1.4
MSH6-207ENST00000456246 CCDC87Q9NVE4 849 aa23.81■■□□□ 1.4
MSH6-207ENST00000456246 UTRNP46939 3433 aa23.81■■□□□ 1.4
MSH6-207ENST00000456246 GRIN3BO60391 1043 aa23.8■■□□□ 1.4
MSH6-207ENST00000456246 NEFMP07197 916 aa23.8■■□□□ 1.4
MSH6-207ENST00000456246 RALBP1Q15311 655 aa23.8■■□□□ 1.4
MSH6-207ENST00000456246 CYP19A1P11511 503 aaPredicted RBP23.79■■□□□ 1.4
MSH6-207ENST00000456246 GYS1P13807 737 aa23.79■■□□□ 1.4
MSH6-207ENST00000456246 INTS5Q6P9B9 1019 aaKnown RBP23.79■■□□□ 1.4
MSH6-207ENST00000456246 PELP1Q8IZL8 1130 aaKnown RBP23.79■■□□□ 1.4
MSH6-207ENST00000456246 RTF1Q92541 710 aaKnown RBP23.79■■□□□ 1.4
MSH6-207ENST00000456246 HTATSF1O43719 755 aaKnown RBP23.78■■□□□ 1.4
MSH6-207ENST00000456246 ZNF790Q6PG37 636 aa23.78■■□□□ 1.4
MSH6-207ENST00000456246 STARD3NLO95772 234 aa23.77■■□□□ 1.4
MSH6-207ENST00000456246 TEX13AQ9BXU3 409 aaPredicted RBP23.77■■□□□ 1.4
MSH6-207ENST00000456246 SOS1Q07889 1333 aaPredicted RBP23.77■■□□□ 1.4
MSH6-207ENST00000456246 USP42Q9H9J4 1324 aaKnown RBP23.77■■□□□ 1.4
MSH6-207ENST00000456246 PNNQ9H307 717 aaKnown RBP23.76■■□□□ 1.39
MSH6-207ENST00000456246 HEG1Q9ULI3 1381 aa23.75■■□□□ 1.39
MSH6-207ENST00000456246 FMNL2Q96PY5 1086 aa23.74■■□□□ 1.39
MSH6-207ENST00000456246 PARP3Q9Y6F1 533 aa23.74■■□□□ 1.39
MSH6-207ENST00000456246 KIF13BQ9NQT8 1826 aa23.74■■□□□ 1.39
MSH6-207ENST00000456246 GOLGB1Q14789 3259 aaKnown RBP23.74■■□□□ 1.39
MSH6-207ENST00000456246 ZPR1O75312 459 aa23.73■■□□□ 1.39
MSH6-207ENST00000456246 DDX10Q13206 875 aaKnown RBP23.73■■□□□ 1.39
MSH6-207ENST00000456246 ZNF496Q96IT1 587 aaPredicted RBP23.73■■□□□ 1.39
MSH6-207ENST00000456246 COL15A1P39059 1388 aa23.73■■□□□ 1.39
MSH6-207ENST00000456246 C10orf71Q711Q0 1435 aa23.73■■□□□ 1.39
MSH6-207ENST00000456246 BTBD11A6QL63 1104 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms