RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 KLHL34Q8N239 644 aa20.63■□□□□ 0.89
CHD3-205ENST00000449744 C4BP0C0L5 1744 aa20.63■□□□□ 0.89
CHD3-205ENST00000449744 KDM6AO15550 1401 aaPredicted RBP20.61■□□□□ 0.89
CHD3-205ENST00000449744 PHF14O94880 888 aa20.6■□□□□ 0.89
CHD3-205ENST00000449744 LINC00116Q8NCU8 138 aa20.6■□□□□ 0.89
CHD3-205ENST00000449744 RBM42Q9BTD8 480 aaKnown RBP20.6■□□□□ 0.89
CHD3-205ENST00000449744 MAP3K5Q99683 1374 aa20.59■□□□□ 0.89
CHD3-205ENST00000449744 ITPK1Q13572 414 aa20.59■□□□□ 0.89
CHD3-205ENST00000449744 AKAP4Q5JQC9 854 aa20.59■□□□□ 0.89
CHD3-205ENST00000449744 MSL1Q68DK7 614 aa20.59■□□□□ 0.89
CHD3-205ENST00000449744 COL24A1Q17RW2 1714 aa20.58■□□□□ 0.89
CHD3-205ENST00000449744 U2SURPO15042 1029 aaKnown RBP20.58■□□□□ 0.89
CHD3-205ENST00000449744 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.57■□□□□ 0.88
CHD3-205ENST00000449744 SSFA2P28290 1259 aa20.57■□□□□ 0.88
CHD3-205ENST00000449744 NFATC2IPQ8NCF5 419 aa20.57■□□□□ 0.88
CHD3-205ENST00000449744 CFAP53Q96M91 514 aa20.57■□□□□ 0.88
CHD3-205ENST00000449744 GNPATO15228 680 aa20.56■□□□□ 0.88
CHD3-205ENST00000449744 SMIM5Q71RC9 77 aa20.54■□□□□ 0.88
CHD3-205ENST00000449744 AMIGO3Q86WK7 504 aa20.54■□□□□ 0.88
CHD3-205ENST00000449744 COL3A1P02461 1466 aaPredicted RBP20.54■□□□□ 0.88
CHD3-205ENST00000449744 UBR3Q6ZT12 1888 aa20.54■□□□□ 0.88
CHD3-205ENST00000449744 PTCD1O75127 700 aaKnown RBP20.53■□□□□ 0.88
CHD3-205ENST00000449744 MTHFSDQ2M296 383 aaKnown RBP20.53■□□□□ 0.88
CHD3-205ENST00000449744 SCN11AQ9UI33 1791 aa20.52■□□□□ 0.88
CHD3-205ENST00000449744 SLC4A9Q96Q91 983 aa20.52■□□□□ 0.88
CHD3-205ENST00000449744 LGR6Q9HBX8 967 aa20.52■□□□□ 0.88
CHD3-205ENST00000449744 RTCBQ9Y3I0 505 aaKnown RBP20.52■□□□□ 0.88
CHD3-205ENST00000449744 RNMTO43148 476 aaKnown RBP20.51■□□□□ 0.87
CHD3-205ENST00000449744 GPR162Q16538 588 aa20.51■□□□□ 0.87
CHD3-205ENST00000449744 SLC52A2Q9HAB3 445 aa20.51■□□□□ 0.87
CHD3-205ENST00000449744 ZNF831Q5JPB2 1677 aa20.51■□□□□ 0.87
CHD3-205ENST00000449744 TRAPPC3LQ5T215 181 aa20.5■□□□□ 0.87
CHD3-205ENST00000449744 RC3H1Q5TC82 1133 aaKnown RBP20.5■□□□□ 0.87
CHD3-205ENST00000449744 NUDCQ9Y266 331 aa20.5■□□□□ 0.87
CHD3-205ENST00000449744 PPP2R1AP30153 589 aa20.49■□□□□ 0.87
CHD3-205ENST00000449744 PELP1Q8IZL8 1130 aaKnown RBP20.49■□□□□ 0.87
CHD3-205ENST00000449744 CNTNAP4Q9C0A0 1308 aa20.49■□□□□ 0.87
CHD3-205ENST00000449744 NLGN2Q8NFZ4 835 aa20.48■□□□□ 0.87
CHD3-205ENST00000449744 GAS2L2Q8NHY3 880 aa20.48■□□□□ 0.87
CHD3-205ENST00000449744 RPS6KA4O75676 772 aa20.46■□□□□ 0.87
CHD3-205ENST00000449744 ADRA2BP18089 450 aa20.46■□□□□ 0.87
CHD3-205ENST00000449744 ZNF784Q8NCA9 323 aaPredicted RBP20.46■□□□□ 0.87
CHD3-205ENST00000449744 CD2APQ9Y5K6 639 aa20.46■□□□□ 0.87
CHD3-205ENST00000449744 COL5A3P25940 1745 aaPredicted RBP20.46■□□□□ 0.87
CHD3-205ENST00000449744 MRC1P22897 1456 aa20.45■□□□□ 0.86
CHD3-205ENST00000449744 GNAT3A8MTJ3 354 aa20.44■□□□□ 0.86
CHD3-205ENST00000449744 U2AF1L5P0DN76 240 aaPredicted RBP20.44■□□□□ 0.86
CHD3-205ENST00000449744 PRKAR2BP31323 418 aa20.44■□□□□ 0.86
CHD3-205ENST00000449744 RFC4P35249 363 aa20.44■□□□□ 0.86
CHD3-205ENST00000449744 CRKLP46109 303 aaKnown RBP20.44■□□□□ 0.86
CHD3-205ENST00000449744 U2AF1Q01081 240 aaKnown RBP eCLIP20.44■□□□□ 0.86
CHD3-205ENST00000449744 SLC39A6Q13433 755 aa20.44■□□□□ 0.86
CHD3-205ENST00000449744 ARHGEF1Q92888 912 aaKnown RBP20.44■□□□□ 0.86
CHD3-205ENST00000449744 VIRMAQ69YN4 1812 aaKnown RBP20.43■□□□□ 0.86
CHD3-205ENST00000449744 TEFQ10587 303 aa20.42■□□□□ 0.86
CHD3-205ENST00000449744 NLGN1Q8N2Q7 840 aa20.42■□□□□ 0.86
CHD3-205ENST00000449744 RSPH6AQ9H0K4 717 aa20.42■□□□□ 0.86
CHD3-205ENST00000449744 ADAMTS7Q9UKP4 1686 aa20.42■□□□□ 0.86
CHD3-205ENST00000449744 MMP10P09238 476 aa20.41■□□□□ 0.86
CHD3-205ENST00000449744 DNAJC10Q8IXB1 793 aa20.41■□□□□ 0.86
CHD3-205ENST00000449744 TTC5Q8N0Z6 440 aa20.41■□□□□ 0.86
CHD3-205ENST00000449744 TJP1Q07157 1748 aa20.4■□□□□ 0.86
CHD3-205ENST00000449744 CICQ96RK0 1608 aaPredicted RBP20.39■□□□□ 0.86
CHD3-205ENST00000449744 GRIN3BO60391 1043 aa20.39■□□□□ 0.85
CHD3-205ENST00000449744 IL17REQ8NFR9 667 aa20.39■□□□□ 0.85
CHD3-205ENST00000449744 PHACTR3Q96KR7 559 aa20.39■□□□□ 0.85
CHD3-205ENST00000449744 MYH14Q7Z406 1995 aaKnown RBP20.39■□□□□ 0.85
CHD3-205ENST00000449744 FCHSD2O94868 740 aa20.38■□□□□ 0.85
CHD3-205ENST00000449744 GYS1P13807 737 aa20.38■□□□□ 0.85
CHD3-205ENST00000449744 CCDC87Q9NVE4 849 aa20.38■□□□□ 0.85
CHD3-205ENST00000449744 CHD4Q14839 1912 aa20.37■□□□□ 0.85
CHD3-205ENST00000449744 INTS5Q6P9B9 1019 aaKnown RBP20.37■□□□□ 0.85
CHD3-205ENST00000449744 VSIG10Q8N0Z9 540 aa20.37■□□□□ 0.85
CHD3-205ENST00000449744 KCPQ6ZWJ8 1503 aa20.37■□□□□ 0.85
CHD3-205ENST00000449744 NEFMP07197 916 aa20.36■□□□□ 0.85
CHD3-205ENST00000449744 CYP19A1P11511 503 aaPredicted RBP20.36■□□□□ 0.85
CHD3-205ENST00000449744 YBX3P16989 372 aaKnown RBP eCLIP20.36■□□□□ 0.85
CHD3-205ENST00000449744 RTF1Q92541 710 aaKnown RBP20.35■□□□□ 0.85
CHD3-205ENST00000449744 PARP3Q9Y6F1 533 aa20.35■□□□□ 0.85
CHD3-205ENST00000449744 USP42Q9H9J4 1324 aaKnown RBP20.34■□□□□ 0.85
CHD3-205ENST00000449744 C4AP0C0L4 1744 aa20.34■□□□□ 0.85
CHD3-205ENST00000449744 ZNF790Q6PG37 636 aa20.34■□□□□ 0.85
CHD3-205ENST00000449744 SRP68Q9UHB9 627 aaKnown RBP20.34■□□□□ 0.85
CHD3-205ENST00000449744 ZPR1O75312 459 aa20.33■□□□□ 0.85
CHD3-205ENST00000449744 STARD3NLO95772 234 aa20.33■□□□□ 0.85
CHD3-205ENST00000449744 CEMIPQ8WUJ3 1361 aa20.33■□□□□ 0.84
CHD3-205ENST00000449744 SOS1Q07889 1333 aaPredicted RBP20.32■□□□□ 0.84
CHD3-205ENST00000449744 BTBD11A6QL63 1104 aa20.32■□□□□ 0.84
CHD3-205ENST00000449744 ZNF496Q96IT1 587 aaPredicted RBP20.32■□□□□ 0.84
CHD3-205ENST00000449744 ZBTB1Q9Y2K1 713 aa20.32■□□□□ 0.84
CHD3-205ENST00000449744 UBR2Q8IWV8 1755 aa20.31■□□□□ 0.84
CHD3-205ENST00000449744 UTRNP46939 3433 aa20.31■□□□□ 0.84
CHD3-205ENST00000449744 DDX10Q13206 875 aaKnown RBP20.31■□□□□ 0.84
CHD3-205ENST00000449744 TEX13AQ9BXU3 409 aaPredicted RBP20.31■□□□□ 0.84
CHD3-205ENST00000449744 WWC3Q9ULE0 1092 aa20.31■□□□□ 0.84
CHD3-205ENST00000449744 HEG1Q9ULI3 1381 aa20.31■□□□□ 0.84
CHD3-205ENST00000449744 CANXP27824 592 aaKnown RBP20.3■□□□□ 0.84
CHD3-205ENST00000449744 TGFB2P61812 414 aa20.3■□□□□ 0.84
CHD3-205ENST00000449744 FKBP8Q14318 412 aa20.3■□□□□ 0.84
CHD3-205ENST00000449744 RALBP1Q15311 655 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms