RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 ITPK1Q13572 414 aa18.18■□□□□ 0.5
HMGB3-204ENST00000448905 AMIGO3Q86WK7 504 aa18.18■□□□□ 0.5
HMGB3-204ENST00000448905 GPBP1L1Q9HC44 474 aaPredicted RBP18.18■□□□□ 0.5
HMGB3-204ENST00000448905 PLEKHG2Q9H7P9 1386 aa18.17■□□□□ 0.5
HMGB3-204ENST00000448905 HSPA5P11021 654 aaKnown RBP18.17■□□□□ 0.5
HMGB3-204ENST00000448905 MTHFSP49914 203 aa18.17■□□□□ 0.5
HMGB3-204ENST00000448905 C1orf141Q5JVX7 400 aa18.17■□□□□ 0.5
HMGB3-204ENST00000448905 KNSTRNQ9Y448 316 aa18.17■□□□□ 0.5
HMGB3-204ENST00000448905 C5P01031 1676 aa18.16■□□□□ 0.5
HMGB3-204ENST00000448905 RC3H1Q5TC82 1133 aaKnown RBP18.16■□□□□ 0.5
HMGB3-204ENST00000448905 IGSF1Q8N6C5 1336 aa18.16■□□□□ 0.5
HMGB3-204ENST00000448905 TAF1LQ8IZX4 1826 aa18.15■□□□□ 0.5
HMGB3-204ENST00000448905 MMP10P09238 476 aa18.15■□□□□ 0.5
HMGB3-204ENST00000448905 ADRA2BP18089 450 aa18.15■□□□□ 0.5
HMGB3-204ENST00000448905 RFC4P35249 363 aa18.15■□□□□ 0.5
HMGB3-204ENST00000448905 ZNF530Q6P9A1 599 aaPredicted RBP18.15■□□□□ 0.5
HMGB3-204ENST00000448905 TGFB2P61812 414 aa18.14■□□□□ 0.49
HMGB3-204ENST00000448905 CCER1Q8TC90 406 aaPredicted RBP18.14■□□□□ 0.49
HMGB3-204ENST00000448905 ITGB4P16144 1822 aa18.14■□□□□ 0.49
HMGB3-204ENST00000448905 TOGARAM1Q9Y4F4 1720 aa18.13■□□□□ 0.49
HMGB3-204ENST00000448905 ARHGEF1Q92888 912 aaKnown RBP18.13■□□□□ 0.49
HMGB3-204ENST00000448905 KIF20BQ96Q89 1820 aa18.12■□□□□ 0.49
HMGB3-204ENST00000448905 RPS6KA4O75676 772 aa18.12■□□□□ 0.49
HMGB3-204ENST00000448905 ZNF526Q8TF50 670 aaPredicted RBP18.12■□□□□ 0.49
HMGB3-204ENST00000448905 SULT6B1Q6IMI4 303 aa18.11■□□□□ 0.49
HMGB3-204ENST00000448905 NFATC2IPQ8NCF5 419 aa18.11■□□□□ 0.49
HMGB3-204ENST00000448905 CCDC87Q9NVE4 849 aa18.11■□□□□ 0.49
HMGB3-204ENST00000448905 PARP3Q9Y6F1 533 aa18.11■□□□□ 0.49
HMGB3-204ENST00000448905 ATP10DQ9P241 1426 aa18.11■□□□□ 0.49
HMGB3-204ENST00000448905 C4BP0C0L5 1744 aa18.1■□□□□ 0.49
HMGB3-204ENST00000448905 PTCD1O75127 700 aaKnown RBP18.1■□□□□ 0.49
HMGB3-204ENST00000448905 CNTNAP4Q9C0A0 1308 aa18.08■□□□□ 0.49
HMGB3-204ENST00000448905 SLC4A9Q96Q91 983 aa18.08■□□□□ 0.48
HMGB3-204ENST00000448905 A0A0G2JLW4 131 aa18.07■□□□□ 0.48
HMGB3-204ENST00000448905 BCS1LQ9Y276 419 aa18.07■□□□□ 0.48
HMGB3-204ENST00000448905 UBR3Q6ZT12 1888 aa18.07■□□□□ 0.48
HMGB3-204ENST00000448905 GYS1P13807 737 aa18.06■□□□□ 0.48
HMGB3-204ENST00000448905 ARHGAP27Q6ZUM4 889 aa18.06■□□□□ 0.48
HMGB3-204ENST00000448905 AEBP1Q8IUX7 1158 aa18.06■□□□□ 0.48
HMGB3-204ENST00000448905 IL13P35225 146 aa18.05■□□□□ 0.48
HMGB3-204ENST00000448905 AKAP4Q5JQC9 854 aa18.05■□□□□ 0.48
HMGB3-204ENST00000448905 PKD1L3Q7Z443 1732 aa18.05■□□□□ 0.48
HMGB3-204ENST00000448905 MAP2P11137 1827 aaKnown RBP18.05■□□□□ 0.48
HMGB3-204ENST00000448905 FCHSD2O94868 740 aa18.04■□□□□ 0.48
HMGB3-204ENST00000448905 CRKLP46109 303 aaKnown RBP18.04■□□□□ 0.48
HMGB3-204ENST00000448905 KDRP35968 1356 aa18.03■□□□□ 0.48
HMGB3-204ENST00000448905 ZPR1O75312 459 aa18.02■□□□□ 0.48
HMGB3-204ENST00000448905 DPEP1P16444 411 aa18.02■□□□□ 0.48
HMGB3-204ENST00000448905 HSPA6P17066 643 aa18.02■□□□□ 0.48
HMGB3-204ENST00000448905 PIM2Q9P1W9 311 aa18.02■□□□□ 0.48
HMGB3-204ENST00000448905 CEP350Q5VT06 3117 aa18.01■□□□□ 0.47
HMGB3-204ENST00000448905 AMER1Q5JTC6 1135 aaPredicted RBP18■□□□□ 0.47
HMGB3-204ENST00000448905 SLC52A2Q9HAB3 445 aa18■□□□□ 0.47
HMGB3-204ENST00000448905 ADCY9O60503 1353 aa18■□□□□ 0.47
HMGB3-204ENST00000448905 DALRD3Q5D0E6 543 aaKnown RBP17.99■□□□□ 0.47
HMGB3-204ENST00000448905 KDM6AO15550 1401 aaPredicted RBP17.98■□□□□ 0.47
HMGB3-204ENST00000448905 DIAPH1O60610 1272 aaKnown RBP17.98■□□□□ 0.47
HMGB3-204ENST00000448905 FKBP8Q14318 412 aa17.98■□□□□ 0.47
HMGB3-204ENST00000448905 IFFO2Q5TF58 517 aa17.98■□□□□ 0.47
HMGB3-204ENST00000448905 INTS5Q6P9B9 1019 aaKnown RBP17.98■□□□□ 0.47
HMGB3-204ENST00000448905 USP42Q9H9J4 1324 aaKnown RBP17.98■□□□□ 0.47
HMGB3-204ENST00000448905 LGR6Q9HBX8 967 aa17.97■□□□□ 0.47
HMGB3-204ENST00000448905 SRP68Q9UHB9 627 aaKnown RBP17.97■□□□□ 0.47
HMGB3-204ENST00000448905 N4BP2Q86UW6 1770 aaPredicted RBP17.96■□□□□ 0.47
HMGB3-204ENST00000448905 KIF3CO14782 793 aa17.96■□□□□ 0.47
HMGB3-204ENST00000448905 RNMTO43148 476 aaKnown RBP17.96■□□□□ 0.47
HMGB3-204ENST00000448905 TOMM70O94826 608 aa17.96■□□□□ 0.47
HMGB3-204ENST00000448905 HMOX1P09601 288 aa17.96■□□□□ 0.47
HMGB3-204ENST00000448905 PXDNLA1KZ92 1463 aa17.95■□□□□ 0.46
HMGB3-204ENST00000448905 ANKRD26Q9UPS8 1709 aa17.95■□□□□ 0.46
HMGB3-204ENST00000448905 KCNA3P22001 575 aa17.95■□□□□ 0.46
HMGB3-204ENST00000448905 TM4SF1P30408 202 aa17.95■□□□□ 0.46
HMGB3-204ENST00000448905 DNAJC10Q8IXB1 793 aa17.95■□□□□ 0.46
HMGB3-204ENST00000448905 VSIG10Q8N0Z9 540 aa17.95■□□□□ 0.46
HMGB3-204ENST00000448905 CYP19A1P11511 503 aaPredicted RBP17.94■□□□□ 0.46
HMGB3-204ENST00000448905 C9orf131Q5VYM1 1079 aa17.94■□□□□ 0.46
HMGB3-204ENST00000448905 USPL1Q5W0Q7 1092 aa17.94■□□□□ 0.46
HMGB3-204ENST00000448905 C16orf71Q8IYS4 520 aaPredicted RBP17.94■□□□□ 0.46
HMGB3-204ENST00000448905 KIF7Q2M1P5 1343 aa17.94■□□□□ 0.46
HMGB3-204ENST00000448905 C10orf71Q711Q0 1435 aa17.93■□□□□ 0.46
HMGB3-204ENST00000448905 STARD3NLO95772 234 aa17.93■□□□□ 0.46
HMGB3-204ENST00000448905 APLP1P51693 650 aa17.93■□□□□ 0.46
HMGB3-204ENST00000448905 SLC39A6Q13433 755 aa17.93■□□□□ 0.46
HMGB3-204ENST00000448905 MTHFSDQ2M296 383 aaKnown RBP17.93■□□□□ 0.46
HMGB3-204ENST00000448905 CC2D1BQ5T0F9 858 aaKnown RBP17.93■□□□□ 0.46
HMGB3-204ENST00000448905 TTC5Q8N0Z6 440 aa17.93■□□□□ 0.46
HMGB3-204ENST00000448905 PER1O15534 1290 aaPredicted RBP17.92■□□□□ 0.46
HMGB3-204ENST00000448905 NARFQ9UHQ1 456 aa17.92■□□□□ 0.46
HMGB3-204ENST00000448905 POLRMTO00411 1230 aaKnown RBP17.91■□□□□ 0.46
HMGB3-204ENST00000448905 DDR1Q08345 913 aa17.91■□□□□ 0.46
HMGB3-204ENST00000448905 NPM2Q86SE8 214 aaKnown RBP17.91■□□□□ 0.46
HMGB3-204ENST00000448905 TEX13AQ9BXU3 409 aaPredicted RBP17.91■□□□□ 0.46
HMGB3-204ENST00000448905 KDM2BQ8NHM5 1336 aa17.91■□□□□ 0.46
HMGB3-204ENST00000448905 CICQ96RK0 1608 aaPredicted RBP17.9■□□□□ 0.46
HMGB3-204ENST00000448905 KIAA1551Q9HCM1 1747 aa17.9■□□□□ 0.46
HMGB3-204ENST00000448905 A0A087WZG4 1122 aa17.9■□□□□ 0.46
HMGB3-204ENST00000448905 U2SURPO15042 1029 aaKnown RBP17.9■□□□□ 0.46
HMGB3-204ENST00000448905 TEFQ10587 303 aa17.9■□□□□ 0.46
HMGB3-204ENST00000448905 SOS1Q07889 1333 aaPredicted RBP17.9■□□□□ 0.46
HMGB3-204ENST00000448905 CHRNA5P30532 468 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms