RNA–Protein interactions for RNA: ENST00000448310.1

CBX4-202, Transcript of chromobox 4, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CBX4, Length 718 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-202ENST00000448310 YBX3P16989 372 aaKnown RBP eCLIP38.66■■■■□ 3.78
CBX4-202ENST00000448310 ZNF530Q6P9A1 599 aaPredicted RBP38.66■■■■□ 3.78
CBX4-202ENST00000448310 SSFA2P28290 1259 aa38.65■■■■□ 3.78
CBX4-202ENST00000448310 KIF7Q2M1P5 1343 aa38.64■■■■□ 3.78
CBX4-202ENST00000448310 KDM6AO15550 1401 aaPredicted RBP38.64■■■■□ 3.78
CBX4-202ENST00000448310 GNPATO15228 680 aa38.64■■■■□ 3.78
CBX4-202ENST00000448310 ERVV-2B6SEH9 535 aa38.63■■■■□ 3.77
CBX4-202ENST00000448310 HSP90AB1P08238 724 aaKnown RBP38.63■■■■□ 3.77
CBX4-202ENST00000448310 DCAF5Q96JK2 942 aa38.63■■■■□ 3.77
CBX4-202ENST00000448310 KDRP35968 1356 aa38.62■■■■□ 3.77
CBX4-202ENST00000448310 AMOTQ4VCS5 1084 aa38.61■■■■□ 3.77
CBX4-202ENST00000448310 AMER1Q5JTC6 1135 aaPredicted RBP38.61■■■■□ 3.77
CBX4-202ENST00000448310 CD2APQ9Y5K6 639 aa38.61■■■■□ 3.77
CBX4-202ENST00000448310 SULT6B1Q6IMI4 303 aa38.6■■■■□ 3.77
CBX4-202ENST00000448310 SLC4A9Q96Q91 983 aa38.59■■■■□ 3.77
CBX4-202ENST00000448310 RBM42Q9BTD8 480 aaKnown RBP38.59■■■■□ 3.77
CBX4-202ENST00000448310 IL13P35225 146 aa38.57■■■■□ 3.76
CBX4-202ENST00000448310 ZNF831Q5JPB2 1677 aa38.57■■■■□ 3.76
CBX4-202ENST00000448310 COL5A3P25940 1745 aaPredicted RBP38.57■■■■□ 3.76
CBX4-202ENST00000448310 CABP4P57796 275 aa38.56■■■■□ 3.76
CBX4-202ENST00000448310 GRIN3BO60391 1043 aa38.55■■■■□ 3.76
CBX4-202ENST00000448310 MTHFSP49914 203 aa38.54■■■■□ 3.76
CBX4-202ENST00000448310 C1orf141Q5JVX7 400 aa38.54■■■■□ 3.76
CBX4-202ENST00000448310 SCN11AQ9UI33 1791 aa38.5■■■■□ 3.75
CBX4-202ENST00000448310 RTCBQ9Y3I0 505 aaKnown RBP38.49■■■■□ 3.75
CBX4-202ENST00000448310 MYH14Q7Z406 1995 aaKnown RBP38.49■■■■□ 3.75
CBX4-202ENST00000448310 WWC3Q9ULE0 1092 aa38.48■■■■□ 3.75
CBX4-202ENST00000448310 TRAPPC3LQ5T215 181 aa38.46■■■■□ 3.75
CBX4-202ENST00000448310 NFATC2IPQ8NCF5 419 aa38.46■■■■□ 3.75
CBX4-202ENST00000448310 PTCD1O75127 700 aaKnown RBP38.45■■■■□ 3.75
CBX4-202ENST00000448310 CC2D1BQ5T0F9 858 aaKnown RBP38.45■■■■□ 3.75
CBX4-202ENST00000448310 PER1O15534 1290 aaPredicted RBP38.44■■■■□ 3.74
CBX4-202ENST00000448310 MMP10P09238 476 aa38.44■■■■□ 3.74
CBX4-202ENST00000448310 CNTNAP4Q9C0A0 1308 aa38.43■■■■□ 3.74
CBX4-202ENST00000448310 VIRMAQ69YN4 1812 aaKnown RBP38.43■■■■□ 3.74
CBX4-202ENST00000448310 RC3H1Q5TC82 1133 aaKnown RBP38.43■■■■□ 3.74
CBX4-202ENST00000448310 C4AP0C0L4 1744 aa38.42■■■■□ 3.74
CBX4-202ENST00000448310 HMOX1P09601 288 aa38.41■■■■□ 3.74
CBX4-202ENST00000448310 ARHGEF1Q92888 912 aaKnown RBP38.41■■■■□ 3.74
CBX4-202ENST00000448310 TJP1Q07157 1748 aa38.41■■■■□ 3.74
CBX4-202ENST00000448310 CICQ96RK0 1608 aaPredicted RBP38.39■■■■□ 3.74
CBX4-202ENST00000448310 RPS6KA4O75676 772 aa38.39■■■■□ 3.74
CBX4-202ENST00000448310 C1QTNF8P60827 252 aa38.39■■■■□ 3.74
CBX4-202ENST00000448310 KIF13BQ9NQT8 1826 aa38.38■■■■□ 3.73
CBX4-202ENST00000448310 ADRA2BP18089 450 aa38.37■■■■□ 3.73
CBX4-202ENST00000448310 CNGB1Q14028 1251 aaPredicted RBP38.37■■■■□ 3.73
CBX4-202ENST00000448310 AKAP4Q5JQC9 854 aa38.37■■■■□ 3.73
CBX4-202ENST00000448310 RFC4P35249 363 aa38.35■■■■□ 3.73
CBX4-202ENST00000448310 LGR6Q9HBX8 967 aa38.35■■■■□ 3.73
CBX4-202ENST00000448310 KIAA1551Q9HCM1 1747 aa38.35■■■■□ 3.73
CBX4-202ENST00000448310 N4BP2Q86UW6 1770 aaPredicted RBP38.34■■■■□ 3.73
CBX4-202ENST00000448310 GIGYF1O75420 1035 aaPredicted RBP38.34■■■■□ 3.73
CBX4-202ENST00000448310 NLGN1Q8N2Q7 840 aa38.34■■■■□ 3.73
CBX4-202ENST00000448310 GYS1P13807 737 aa38.33■■■■□ 3.73
CBX4-202ENST00000448310 CRKLP46109 303 aaKnown RBP38.33■■■■□ 3.73
CBX4-202ENST00000448310 DIAPH1O60610 1272 aaKnown RBP38.32■■■■□ 3.72
CBX4-202ENST00000448310 ATP10DQ9P241 1426 aa38.31■■■■□ 3.72
CBX4-202ENST00000448310 PXDNLA1KZ92 1463 aa38.3■■■■□ 3.72
CBX4-202ENST00000448310 SLC52A2Q9HAB3 445 aa38.3■■■■□ 3.72
CBX4-202ENST00000448310 MRC1P22897 1456 aa38.28■■■■□ 3.72
CBX4-202ENST00000448310 SENP3-EIF4A1A0A087X0R7 540 aa38.28■■■■□ 3.72
CBX4-202ENST00000448310 RNMTO43148 476 aaKnown RBP38.28■■■■□ 3.72
CBX4-202ENST00000448310 MTHFSDQ2M296 383 aaKnown RBP38.28■■■■□ 3.72
CBX4-202ENST00000448310 C10orf71Q711Q0 1435 aa38.27■■■■□ 3.72
CBX4-202ENST00000448310 SRP68Q9UHB9 627 aaKnown RBP38.26■■■■□ 3.72
CBX4-202ENST00000448310 COL3A1P02461 1466 aaPredicted RBP38.26■■■■□ 3.72
CBX4-202ENST00000448310 SLC39A6Q13433 755 aa38.25■■■■□ 3.71
CBX4-202ENST00000448310 ADAMTS7Q9UKP4 1686 aa38.25■■■■□ 3.71
CBX4-202ENST00000448310 DNAJC10Q8IXB1 793 aa38.24■■■■□ 3.71
CBX4-202ENST00000448310 ADCY9O60503 1353 aa38.23■■■■□ 3.71
CBX4-202ENST00000448310 NPC1L1Q9UHC9 1359 aa38.23■■■■□ 3.71
CBX4-202ENST00000448310 INTS5Q6P9B9 1019 aaKnown RBP38.23■■■■□ 3.71
CBX4-202ENST00000448310 PARP3Q9Y6F1 533 aa38.23■■■■□ 3.71
CBX4-202ENST00000448310 A0A0G2JLW4 131 aa38.22■■■■□ 3.71
CBX4-202ENST00000448310 CCDC87Q9NVE4 849 aa38.22■■■■□ 3.71
CBX4-202ENST00000448310 TGFB2P61812 414 aa38.21■■■■□ 3.71
CBX4-202ENST00000448310 USP42Q9H9J4 1324 aaKnown RBP38.2■■■■□ 3.71
CBX4-202ENST00000448310 KCPQ6ZWJ8 1503 aa38.2■■■■□ 3.71
CBX4-202ENST00000448310 FKBP8Q14318 412 aa38.19■■■■□ 3.7
CBX4-202ENST00000448310 U2SURPO15042 1029 aaKnown RBP38.18■■■■□ 3.7
CBX4-202ENST00000448310 ZNF526Q8TF50 670 aaPredicted RBP38.18■■■■□ 3.7
CBX4-202ENST00000448310 BRCA1P38398 1863 aaKnown RBP38.18■■■■□ 3.7
CBX4-202ENST00000448310 BCS1LQ9Y276 419 aa38.17■■■■□ 3.7
CBX4-202ENST00000448310 DPEP1P16444 411 aa38.16■■■■□ 3.7
CBX4-202ENST00000448310 GPBP1L1Q9HC44 474 aaPredicted RBP38.15■■■■□ 3.7
CBX4-202ENST00000448310 UBR2Q8IWV8 1755 aa38.14■■■■□ 3.7
CBX4-202ENST00000448310 DDR1Q08345 913 aa38.14■■■■□ 3.7
CBX4-202ENST00000448310 CYP19A1P11511 503 aaPredicted RBP38.13■■■■□ 3.69
CBX4-202ENST00000448310 SOS1Q07889 1333 aaPredicted RBP38.12■■■■□ 3.69
CBX4-202ENST00000448310 USPL1Q5W0Q7 1092 aa38.09■■■■□ 3.69
CBX4-202ENST00000448310 ZBTB1Q9Y2K1 713 aa38.08■■■■□ 3.69
CBX4-202ENST00000448310 ZPR1O75312 459 aa38.07■■■■□ 3.68
CBX4-202ENST00000448310 FCHSD2O94868 740 aa38.07■■■■□ 3.68
CBX4-202ENST00000448310 KCNA3P22001 575 aa38.06■■■■□ 3.68
CBX4-202ENST00000448310 SIPA1L3O60292 1781 aaPredicted RBP38.06■■■■□ 3.68
CBX4-202ENST00000448310 ARFGEF1Q9Y6D6 1849 aa38.05■■■■□ 3.68
CBX4-202ENST00000448310 COL15A1P39059 1388 aa38.05■■■■□ 3.68
CBX4-202ENST00000448310 POLRMTO00411 1230 aaKnown RBP38.04■■■■□ 3.68
CBX4-202ENST00000448310 TM4SF1P30408 202 aa38.04■■■■□ 3.68
CBX4-202ENST00000448310 ARHGAP27Q6ZUM4 889 aa38.04■■■■□ 3.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms