RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 ITPK1Q13572 414 aa11□□□□□ -0.65
LIMCH1-204ENST00000446625 CARD11Q9BXL7 1154 aa11□□□□□ -0.65
LIMCH1-204ENST00000446625 C10orf71Q711Q0 1435 aa11□□□□□ -0.65
LIMCH1-204ENST00000446625 SMG6Q86US8 1419 aaKnown RBP11□□□□□ -0.65
LIMCH1-204ENST00000446625 KCPQ6ZWJ8 1503 aa10.99□□□□□ -0.65
LIMCH1-204ENST00000446625 NEUROD1Q13562 356 aa10.99□□□□□ -0.65
LIMCH1-204ENST00000446625 HSP90AB2PQ58FF8 381 aa10.99□□□□□ -0.65
LIMCH1-204ENST00000446625 PUS7Q96PZ0 661 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-204ENST00000446625 ATP6V1AP38606 617 aa10.98□□□□□ -0.65
LIMCH1-204ENST00000446625 RRAGCQ9HB90 399 aa10.98□□□□□ -0.65
LIMCH1-204ENST00000446625 ASAP1Q9ULH1 1129 aa10.98□□□□□ -0.65
LIMCH1-204ENST00000446625 PLEKHG2Q9H7P9 1386 aa10.98□□□□□ -0.65
LIMCH1-204ENST00000446625 C4AP0C0L4 1744 aa10.98□□□□□ -0.65
LIMCH1-204ENST00000446625 NKX1-1Q15270 411 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-204ENST00000446625 NLGN1Q8N2Q7 840 aa10.97□□□□□ -0.65
LIMCH1-204ENST00000446625 KDM2BQ8NHM5 1336 aa10.97□□□□□ -0.65
LIMCH1-204ENST00000446625 INSRP06213 1382 aa10.97□□□□□ -0.65
LIMCH1-204ENST00000446625 TNRC6CQ9HCJ0 1690 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-204ENST00000446625 MYH14Q7Z406 1995 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-204ENST00000446625 FYB1O15117 783 aa10.96□□□□□ -0.65
LIMCH1-204ENST00000446625 KCNA3P22001 575 aa10.96□□□□□ -0.65
LIMCH1-204ENST00000446625 TMF1P82094 1093 aa10.96□□□□□ -0.65
LIMCH1-204ENST00000446625 TRAPPC3LQ5T215 181 aa10.96□□□□□ -0.65
LIMCH1-204ENST00000446625 GGNBP2Q9H3C7 697 aa10.96□□□□□ -0.65
LIMCH1-204ENST00000446625 CCDC87Q9NVE4 849 aa10.96□□□□□ -0.65
LIMCH1-204ENST00000446625 HSPA1AP0DMV8 641 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-204ENST00000446625 HSPA1BP0DMV9 641 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-204ENST00000446625 SMC1BQ8NDV3 1235 aa10.95□□□□□ -0.66
LIMCH1-204ENST00000446625 TMOD3Q9NYL9 352 aa10.95□□□□□ -0.66
LIMCH1-204ENST00000446625 RNF181Q9P0P0 153 aa10.95□□□□□ -0.66
LIMCH1-204ENST00000446625 FLT4P35916 1363 aa10.94□□□□□ -0.66
LIMCH1-204ENST00000446625 CCDC88AQ3V6T2 1871 aa10.94□□□□□ -0.66
LIMCH1-204ENST00000446625 GYS1P13807 737 aa10.94□□□□□ -0.66
LIMCH1-204ENST00000446625 ARHGEF1Q92888 912 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-204ENST00000446625 DCAF5Q96JK2 942 aa10.94□□□□□ -0.66
LIMCH1-204ENST00000446625 ATG3Q9NT62 314 aa10.94□□□□□ -0.66
LIMCH1-204ENST00000446625 PIM2Q9P1W9 311 aa10.94□□□□□ -0.66
LIMCH1-204ENST00000446625 RTCBQ9Y3I0 505 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-204ENST00000446625 KIF20BQ96Q89 1820 aa10.93□□□□□ -0.66
LIMCH1-204ENST00000446625 COL5A3P25940 1745 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-204ENST00000446625 DALRD3Q5D0E6 543 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-204ENST00000446625 SLC4A9Q96Q91 983 aa10.93□□□□□ -0.66
LIMCH1-204ENST00000446625 TESK2Q96S53 571 aa10.93□□□□□ -0.66
LIMCH1-204ENST00000446625 SPG7Q9UQ90 795 aa10.93□□□□□ -0.66
LIMCH1-204ENST00000446625 PARP3Q9Y6F1 533 aa10.93□□□□□ -0.66
LIMCH1-204ENST00000446625 KDRP35968 1356 aa10.92□□□□□ -0.66
LIMCH1-204ENST00000446625 NCAPD2Q15021 1401 aa10.92□□□□□ -0.66
LIMCH1-204ENST00000446625 ZNF831Q5JPB2 1677 aa10.92□□□□□ -0.66
LIMCH1-204ENST00000446625 KIF24Q5T7B8 1368 aa10.91□□□□□ -0.66
LIMCH1-204ENST00000446625 RFC4P35249 363 aa10.91□□□□□ -0.66
LIMCH1-204ENST00000446625 EMILIN1Q9Y6C2 1016 aa10.91□□□□□ -0.66
LIMCH1-204ENST00000446625 ST20-MTHFSA0A0A6YYL1 179 aa10.9□□□□□ -0.66
LIMCH1-204ENST00000446625 RPS6KA4O75676 772 aa10.9□□□□□ -0.66
LIMCH1-204ENST00000446625 PHKG2P15735 406 aa10.9□□□□□ -0.66
LIMCH1-204ENST00000446625 CHRNA5P30532 468 aa10.9□□□□□ -0.66
LIMCH1-204ENST00000446625 RC3H1Q5TC82 1133 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-204ENST00000446625 IFNL2Q8IZJ0 200 aa10.9□□□□□ -0.66
LIMCH1-204ENST00000446625 RBM42Q9BTD8 480 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-204ENST00000446625 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.9□□□□□ -0.66
LIMCH1-204ENST00000446625 CNTNAP4Q9C0A0 1308 aa10.89□□□□□ -0.67
LIMCH1-204ENST00000446625 DDR1Q08345 913 aa10.89□□□□□ -0.67
LIMCH1-204ENST00000446625 EYA1Q99502 592 aa10.89□□□□□ -0.67
LIMCH1-204ENST00000446625 TONSLQ96HA7 1378 aa10.89□□□□□ -0.67
LIMCH1-204ENST00000446625 PPM1GO15355 546 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-204ENST00000446625 VEGFAP15692 232 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-204ENST00000446625 RASSF7Q02833 373 aa10.88□□□□□ -0.67
LIMCH1-204ENST00000446625 FKBP8Q14318 412 aa10.88□□□□□ -0.67
LIMCH1-204ENST00000446625 SRP68Q9UHB9 627 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-204ENST00000446625 ANKRD26Q9UPS8 1709 aa10.87□□□□□ -0.67
LIMCH1-204ENST00000446625 KDM6AO15550 1401 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-204ENST00000446625 GLTPD2A6NH11 291 aa10.87□□□□□ -0.67
LIMCH1-204ENST00000446625 SLC34A2O95436 690 aa10.87□□□□□ -0.67
LIMCH1-204ENST00000446625 TIAM2Q8IVF5 1701 aa10.87□□□□□ -0.67
LIMCH1-204ENST00000446625 ZC3H4Q9UPT8 1303 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-204ENST00000446625 AFDNP55196 1824 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-204ENST00000446625 WASHC2AQ641Q2 1341 aa10.85□□□□□ -0.67
LIMCH1-204ENST00000446625 POTECB2RU33 542 aa10.85□□□□□ -0.67
LIMCH1-204ENST00000446625 ERVV-2B6SEH9 535 aa10.85□□□□□ -0.67
LIMCH1-204ENST00000446625 SLC24A1O60721 1099 aa10.85□□□□□ -0.67
LIMCH1-204ENST00000446625 LMNB1P20700 586 aa10.85□□□□□ -0.67
LIMCH1-204ENST00000446625 DLEC1Q9Y238 1755 aa10.85□□□□□ -0.67
LIMCH1-204ENST00000446625 USP42Q9H9J4 1324 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-204ENST00000446625 DICER1Q9UPY3 1922 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-204ENST00000446625 POLRMTO00411 1230 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-204ENST00000446625 TM4SF1P30408 202 aa10.84□□□□□ -0.67
LIMCH1-204ENST00000446625 CRKLP46109 303 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-204ENST00000446625 MKRN1Q9UHC7 482 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-204ENST00000446625 ADAMTS7Q9UKP4 1686 aa10.84□□□□□ -0.67
LIMCH1-204ENST00000446625 FOXN1O15353 648 aa10.83□□□□□ -0.68
LIMCH1-204ENST00000446625 PTCD1O75127 700 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-204ENST00000446625 CARD14Q9BXL6 1004 aa10.83□□□□□ -0.68
LIMCH1-204ENST00000446625 TJP1Q07157 1748 aa10.83□□□□□ -0.68
LIMCH1-204ENST00000446625 CABP4P57796 275 aa10.82□□□□□ -0.68
LIMCH1-204ENST00000446625 NFKBIEO00221 500 aa10.81□□□□□ -0.68
LIMCH1-204ENST00000446625 HSP90AB1P08238 724 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-204ENST00000446625 INTS5Q6P9B9 1019 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-204ENST00000446625 PRDM10Q9NQV6 1147 aa10.81□□□□□ -0.68
LIMCH1-204ENST00000446625 CREBZFQ9NS37 354 aa10.81□□□□□ -0.68
LIMCH1-204ENST00000446625 POLKQ9UBT6 870 aa10.81□□□□□ -0.68
LIMCH1-204ENST00000446625 NRXN2Q9P2S2 1712 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms