RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 GNASQ5JWF2 1037 aa11.57□□□□□ -0.56
LINC01040-201ENST00000425048 TMEM214Q6NUQ4 689 aaKnown RBP11.57□□□□□ -0.56
LINC01040-201ENST00000425048 NEDD1Q8NHV4 660 aa11.57□□□□□ -0.56
LINC01040-201ENST00000425048 CFHR5Q9BXR6 569 aa11.57□□□□□ -0.56
LINC01040-201ENST00000425048 DOLKQ9UPQ8 538 aa11.57□□□□□ -0.56
LINC01040-201ENST00000425048 A0A1B0GTH6 734 aa11.56□□□□□ -0.56
LINC01040-201ENST00000425048 BEND7Q8N7W2 519 aaPredicted RBP11.56□□□□□ -0.56
LINC01040-201ENST00000425048 ACDQ96AP0 544 aa11.56□□□□□ -0.56
LINC01040-201ENST00000425048 IRF5Q13568 498 aa11.55□□□□□ -0.56
LINC01040-201ENST00000425048 SUZ12Q15022 739 aaKnown RBP11.55□□□□□ -0.56
LINC01040-201ENST00000425048 RNF135Q8IUD6 432 aa11.55□□□□□ -0.56
LINC01040-201ENST00000425048 SIRT1Q96EB6 747 aa11.55□□□□□ -0.56
LINC01040-201ENST00000425048 GPAMQ9HCL2 828 aa11.55□□□□□ -0.56
LINC01040-201ENST00000425048 LRRC4BQ9NT99 713 aa11.55□□□□□ -0.56
LINC01040-201ENST00000425048 PHF20L1A8MW92 1017 aa11.54□□□□□ -0.56
LINC01040-201ENST00000425048 IGHA1P01876 353 aa11.54□□□□□ -0.56
LINC01040-201ENST00000425048 FHDC1Q9C0D6 1143 aaPredicted RBP11.54□□□□□ -0.56
LINC01040-201ENST00000425048 MAP2K3P46734 347 aa11.53□□□□□ -0.56
LINC01040-201ENST00000425048 FOXK2Q01167 660 aa11.53□□□□□ -0.56
LINC01040-201ENST00000425048 PHF24Q9UPV7 400 aa11.53□□□□□ -0.56
LINC01040-201ENST00000425048 LBRQ14739 615 aaKnown RBP11.52□□□□□ -0.57
LINC01040-201ENST00000425048 GPAT2Q6NUI2 795 aa11.52□□□□□ -0.57
LINC01040-201ENST00000425048 CNTNAP5Q8WYK1 1306 aa11.52□□□□□ -0.57
LINC01040-201ENST00000425048 CSB-PGBD3P0DP91 1061 aa11.51□□□□□ -0.57
LINC01040-201ENST00000425048 C4orf17Q53FE4 359 aa11.51□□□□□ -0.57
LINC01040-201ENST00000425048 OXLD1Q5BKU9 147 aa11.51□□□□□ -0.57
LINC01040-201ENST00000425048 PODNQ7Z5L7 613 aa11.51□□□□□ -0.57
LINC01040-201ENST00000425048 PGBD3Q8N328 593 aa11.51□□□□□ -0.57
LINC01040-201ENST00000425048 CHIC2Q9UKJ5 165 aa11.51□□□□□ -0.57
LINC01040-201ENST00000425048 THBS1P07996 1170 aa11.5□□□□□ -0.57
LINC01040-201ENST00000425048 VAC14Q08AM6 782 aa11.5□□□□□ -0.57
LINC01040-201ENST00000425048 PPARGC1BQ86YN6 1023 aaKnown RBP11.5□□□□□ -0.57
LINC01040-201ENST00000425048 ETNK1Q9HBU6 452 aa11.5□□□□□ -0.57
LINC01040-201ENST00000425048 OIP5O43482 229 aa11.49□□□□□ -0.57
LINC01040-201ENST00000425048 MSX1P28360 303 aa11.49□□□□□ -0.57
LINC01040-201ENST00000425048 WASHC4Q2M389 1173 aa11.49□□□□□ -0.57
LINC01040-201ENST00000425048 RHBDD1Q8TEB9 315 aa11.49□□□□□ -0.57
LINC01040-201ENST00000425048 OXCT2Q9BYC2 517 aaPredicted RBP11.49□□□□□ -0.57
LINC01040-201ENST00000425048 GDPD2Q9HCC8 539 aa11.49□□□□□ -0.57
LINC01040-201ENST00000425048 EFHC2Q5JST6 749 aa11.48□□□□□ -0.57
LINC01040-201ENST00000425048 RUBCNLQ9H714 662 aa11.48□□□□□ -0.57
LINC01040-201ENST00000425048 ABL2P42684 1182 aa11.47□□□□□ -0.57
LINC01040-201ENST00000425048 TLR1Q15399 786 aa11.47□□□□□ -0.57
LINC01040-201ENST00000425048 MAP7D1Q3KQU3 841 aa11.47□□□□□ -0.57
LINC01040-201ENST00000425048 KLRG1Q96E93 195 aa11.47□□□□□ -0.57
LINC01040-201ENST00000425048 LOC100996750A0A140TA64 210 aa11.46□□□□□ -0.57
LINC01040-201ENST00000425048 STAU1O95793 577 aaKnown RBP11.46□□□□□ -0.57
LINC01040-201ENST00000425048 KRTAP4-6Q9BYQ5 205 aa11.46□□□□□ -0.57
LINC01040-201ENST00000425048 SEMA3FQ13275 785 aa11.45□□□□□ -0.58
LINC01040-201ENST00000425048 UBAP2LQ14157 1087 aaKnown RBP11.45□□□□□ -0.58
LINC01040-201ENST00000425048 INHAP05111 366 aa11.44□□□□□ -0.58
LINC01040-201ENST00000425048 GALNT6Q8NCL4 622 aa11.44□□□□□ -0.58
LINC01040-201ENST00000425048 DCAF5Q96JK2 942 aa11.44□□□□□ -0.58
LINC01040-201ENST00000425048 GDF2Q9UK05 429 aaPredicted RBP11.44□□□□□ -0.58
LINC01040-201ENST00000425048 SOX11P35716 441 aa11.43□□□□□ -0.58
LINC01040-201ENST00000425048 GDF10P55107 478 aa11.43□□□□□ -0.58
LINC01040-201ENST00000425048 PLPP7Q8NBV4 271 aa11.43□□□□□ -0.58
LINC01040-201ENST00000425048 ATXN7L1Q9ULK2 861 aaPredicted RBP11.43□□□□□ -0.58
LINC01040-201ENST00000425048 CRISPLD1Q9H336 500 aa11.42□□□□□ -0.58
LINC01040-201ENST00000425048 SCNN1DP51172 638 aa11.41□□□□□ -0.58
LINC01040-201ENST00000425048 TBC1D9Q6ZT07 1266 aa11.41□□□□□ -0.58
LINC01040-201ENST00000425048 NIFKQ9BYG3 293 aaKnown RBP11.41□□□□□ -0.58
LINC01040-201ENST00000425048 BNIP3LO60238 219 aa11.4□□□□□ -0.58
LINC01040-201ENST00000425048 BMP4P12644 408 aa11.4□□□□□ -0.58
LINC01040-201ENST00000425048 SMTNP53814 917 aa11.4□□□□□ -0.58
LINC01040-201ENST00000425048 PLA2G4EQ3MJ16 856 aa11.4□□□□□ -0.58
LINC01040-201ENST00000425048 GOLGA6L1Q8N7Z2 621 aa11.4□□□□□ -0.58
LINC01040-201ENST00000425048 C1orf216Q8TAB5 229 aa11.4□□□□□ -0.58
LINC01040-201ENST00000425048 EDARADDQ8WWZ3 215 aa11.4□□□□□ -0.58
LINC01040-201ENST00000425048 ABHD17AQ96GS6 310 aa11.4□□□□□ -0.58
LINC01040-201ENST00000425048 PLA2G4AP47712 749 aa11.39□□□□□ -0.59
LINC01040-201ENST00000425048 FIGNL1Q6PIW4 674 aa11.39□□□□□ -0.59
LINC01040-201ENST00000425048 AIDAQ96BJ3 306 aa11.39□□□□□ -0.59
LINC01040-201ENST00000425048 NDFIP2Q9NV92 336 aa11.39□□□□□ -0.59
LINC01040-201ENST00000425048 SHISA8B8ZZ34 492 aa11.38□□□□□ -0.59
LINC01040-201ENST00000425048 MSTNO14793 375 aa11.38□□□□□ -0.59
LINC01040-201ENST00000425048 FGFR3P22607 806 aa11.38□□□□□ -0.59
LINC01040-201ENST00000425048 C1orf229Q6ZS94 237 aaPredicted RBP11.38□□□□□ -0.59
LINC01040-201ENST00000425048 C2CD2LO14523 706 aa11.37□□□□□ -0.59
LINC01040-201ENST00000425048 SNRPNP63162 240 aaKnown RBP11.37□□□□□ -0.59
LINC01040-201ENST00000425048 CTBSQ01459 385 aa11.37□□□□□ -0.59
LINC01040-201ENST00000425048 ZCCHC2Q9C0B9 1178 aaKnown RBP11.37□□□□□ -0.59
LINC01040-201ENST00000425048 MKL2Q9ULH7 1088 aa11.37□□□□□ -0.59
LINC01040-201ENST00000425048 PCDHGC4Q9Y5F7 938 aa11.37□□□□□ -0.59
LINC01040-201ENST00000425048 MCM6Q14566 821 aa11.36□□□□□ -0.59
LINC01040-201ENST00000425048 NLRP8Q86W28 1048 aa11.36□□□□□ -0.59
LINC01040-201ENST00000425048 SLC4A9Q96Q91 983 aa11.36□□□□□ -0.59
LINC01040-201ENST00000425048 RRAGCQ9HB90 399 aa11.36□□□□□ -0.59
LINC01040-201ENST00000425048 SERTAD1Q9UHV2 236 aa11.36□□□□□ -0.59
LINC01040-201ENST00000425048 CDK2AP1O14519 115 aa11.35□□□□□ -0.59
LINC01040-201ENST00000425048 A6NJY4 79 aa11.33□□□□□ -0.6
LINC01040-201ENST00000425048 TMEM229AB2RXF0 380 aa11.33□□□□□ -0.6
LINC01040-201ENST00000425048 SPOCK3Q9BQ16 436 aa11.33□□□□□ -0.6
LINC01040-201ENST00000425048 DNAAF2Q9NVR5 837 aaKnown RBP11.33□□□□□ -0.6
LINC01040-201ENST00000425048 GGA1Q9UJY5 639 aa11.33□□□□□ -0.6
LINC01040-201ENST00000425048 ATXN7O15265 892 aaPredicted RBP11.32□□□□□ -0.6
LINC01040-201ENST00000425048 LZTS3O60299 673 aaPredicted RBP11.32□□□□□ -0.6
LINC01040-201ENST00000425048 ATP4AP20648 1035 aa11.32□□□□□ -0.6
LINC01040-201ENST00000425048 AMPD1P23109 780 aa11.32□□□□□ -0.6
LINC01040-201ENST00000425048 MTFR1Q15390 333 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms