RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 RNF20Q5VTR2 975 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 CAVIN2O95810 425 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 HCLS1P14317 486 aaPredicted RBP4□□□□□ -1.77
SYNE1-212ENST00000423061 SPINK5Q9NQ38 1064 aaPredicted RBP4□□□□□ -1.77
SYNE1-212ENST00000423061 DBN1Q16643 649 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 LRSAM1Q6UWE0 723 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 MBD3O95983 291 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 AP1G2O75843 785 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 NBPF8Q3BBV2 869 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 WWC2Q6AWC2 1192 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 PEX19P40855 299 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 KIAA1328Q86T90 577 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 BECN2A8MW95 431 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 SMARCE1Q969G3 411 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 FGD5Q6ZNL6 1462 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 CTTNBP2Q8WZ74 1663 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 GOLGA6L10A6NI86 522 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 FAM184AQ8NB25 1140 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 POLKQ9UBT6 870 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 KAT6BQ8WYB5 2073 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 MIA2Q96PC5 1412 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 INPP5BP32019 993 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 LRMPQ12912 555 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 FBXO38Q6PIJ6 1188 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 PDE11AQ9HCR9 933 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 RUFY1Q96T51 708 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 DNAI1Q9UI46 699 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 THOC2Q8NI27 1593 aaKnown RBP3.99□□□□□ -1.77
SYNE1-212ENST00000423061 NEK4P51957 841 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 ZBTB10Q96DT7 871 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 FAM210AQ96ND0 272 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 ARFGAP3Q9NP61 516 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 ITSN2Q9NZM3 1697 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 KIF7Q2M1P5 1343 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 KLHL23Q8NBE8 558 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 FMNL2Q96PY5 1086 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 HFM1A2PYH4 1435 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 KDM4AO75164 1064 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 PTPN23Q9H3S7 1636 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 GOLGA6L19H0YKK7 550 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 PACS2Q86VP3 889 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 HNRNPH1P31943 449 aaKnown RBP3.99□□□□□ -1.77
SYNE1-212ENST00000423061 ERCC4Q92889 916 aaPredicted RBP3.99□□□□□ -1.77
SYNE1-212ENST00000423061 ERCC6LQ2NKX8 1250 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 TPX2Q9ULW0 747 aaKnown RBP3.99□□□□□ -1.77
SYNE1-212ENST00000423061 CSB-PGBD3P0DP91 1061 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 ADAMTS8Q9UP79 889 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 USP48Q86UV5 1035 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 SMC1AQ14683 1233 aaKnown RBP3.99□□□□□ -1.77
SYNE1-212ENST00000423061 GPATCH3Q96I76 525 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 RUSC2Q8N2Y8 1516 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 ERLIN2O94905 339 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 CREBRFQ8IUR6 639 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 SLU7O95391 586 aaKnown RBP3.99□□□□□ -1.77
SYNE1-212ENST00000423061 TPP2P29144 1249 aaPredicted RBP3.99□□□□□ -1.77
SYNE1-212ENST00000423061 KDM2BQ8NHM5 1336 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 MICALCLQ6ZW33 695 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 PKD2Q13563 968 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 GOLGA5Q8TBA6 731 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 ATAD2BQ9ULI0 1458 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 ERC1Q8IUD2 1116 aa3.99□□□□□ -1.77
SYNE1-212ENST00000423061 HMGXB3Q12766 1538 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 CCDC183Q5T5S1 534 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 NBPF10Q6P3W6 841 aaKnown RBP3.98□□□□□ -1.77
SYNE1-212ENST00000423061 PCDHB15Q9Y5E8 787 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 RPSAP08865 295 aaKnown RBP3.98□□□□□ -1.77
SYNE1-212ENST00000423061 WDR63Q8IWG1 891 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 FAM135AQ9P2D6 1515 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 GPT2Q8TD30 523 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 PICK1Q9NRD5 415 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 ERO1AQ96HE7 468 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 CTCFLQ8NI51 663 aaPredicted RBP3.98□□□□□ -1.77
SYNE1-212ENST00000423061 GADD45BO75293 160 aaPredicted RBP3.98□□□□□ -1.77
SYNE1-212ENST00000423061 CCNHP51946 323 aaPredicted RBP3.98□□□□□ -1.77
SYNE1-212ENST00000423061 FOSBP53539 338 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 SPATS2LQ9NUQ6 558 aaKnown RBP3.98□□□□□ -1.77
SYNE1-212ENST00000423061 EXOC6BQ9Y2D4 811 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 GNPTABQ3T906 1256 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 CKAP2LQ8IYA6 745 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 ODF2LQ9ULJ1 636 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 UVSSAQ2YD98 709 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 NUP155O75694 1391 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 KIF3CO14782 793 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 FIBPO43427 364 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 CAPN7Q9Y6W3 813 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 ARMC2Q8NEN0 867 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 MYO6Q9UM54 1294 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 BIVM-ERCC5R4GMW8 1640 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 IRX1P78414 480 aaPredicted RBP3.98□□□□□ -1.77
SYNE1-212ENST00000423061 ECEL1O95672 775 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 EIF5P55010 431 aaKnown RBP3.98□□□□□ -1.77
SYNE1-212ENST00000423061 SH3GL3Q99963 347 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 EZRP15311 586 aaKnown RBP3.98□□□□□ -1.77
SYNE1-212ENST00000423061 FAM160A1Q05DH4 1040 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 SENP3Q9H4L4 574 aaPredicted RBP3.98□□□□□ -1.77
SYNE1-212ENST00000423061 EBAG9O00559 213 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 CCDC192P0DO97 292 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 KIRREL3Q8IZU9 778 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 CLIP2Q9UDT6 1046 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 CTAGE5O15320 804 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms