RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ABCC4O15439 1325 aa10.46□□□□□ -0.74
USP54-203ENST00000418501 CHRNA2Q15822 529 aa10.46□□□□□ -0.74
USP54-203ENST00000418501 PDE4AP27815 886 aa10.45□□□□□ -0.74
USP54-203ENST00000418501 SRCIN1Q9C0H9 1055 aa10.45□□□□□ -0.74
USP54-203ENST00000418501 MED1Q15648 1581 aaPredicted RBP10.45□□□□□ -0.74
USP54-203ENST00000418501 FLIIQ13045 1269 aa10.45□□□□□ -0.74
USP54-203ENST00000418501 BECN1Q14457 450 aa10.45□□□□□ -0.74
USP54-203ENST00000418501 IL17REQ8NFR9 667 aa10.45□□□□□ -0.74
USP54-203ENST00000418501 KDM2BQ8NHM5 1336 aa10.45□□□□□ -0.74
USP54-203ENST00000418501 TSPYL6Q8N831 410 aa10.45□□□□□ -0.74
USP54-203ENST00000418501 UBTFL1P0CB47 393 aaPredicted RBP10.44□□□□□ -0.74
USP54-203ENST00000418501 CABLES1Q8TDN4 633 aa10.44□□□□□ -0.74
USP54-203ENST00000418501 ERVV-2B6SEH9 535 aa10.44□□□□□ -0.74
USP54-203ENST00000418501 ZBTB40Q9NUA8 1239 aa10.44□□□□□ -0.74
USP54-203ENST00000418501 SNRPA1P09661 255 aaKnown RBP10.44□□□□□ -0.74
USP54-203ENST00000418501 PXDNQ92626 1479 aa10.44□□□□□ -0.74
USP54-203ENST00000418501 SLC52A2Q9HAB3 445 aa10.44□□□□□ -0.74
USP54-203ENST00000418501 PEAK1Q9H792 1746 aa10.43□□□□□ -0.74
USP54-203ENST00000418501 PHKG2P15735 406 aa10.43□□□□□ -0.74
USP54-203ENST00000418501 MIS18AQ9NYP9 233 aa10.43□□□□□ -0.74
USP54-203ENST00000418501 ERBB4Q15303 1308 aa10.43□□□□□ -0.74
USP54-203ENST00000418501 PHRF1Q9P1Y6 1649 aaKnown RBP10.43□□□□□ -0.74
USP54-203ENST00000418501 EIF4A1P60842 406 aaKnown RBP10.43□□□□□ -0.74
USP54-203ENST00000418501 CCDC9Q9Y3X0 531 aaKnown RBP10.43□□□□□ -0.74
USP54-203ENST00000418501 CEMIPQ8WUJ3 1361 aa10.43□□□□□ -0.74
USP54-203ENST00000418501 ALDH1L1O75891 902 aa10.42□□□□□ -0.74
USP54-203ENST00000418501 C9orf78Q9NZ63 289 aaPredicted RBP10.42□□□□□ -0.74
USP54-203ENST00000418501 PDZRN3Q9UPQ7 1066 aa10.42□□□□□ -0.74
USP54-203ENST00000418501 EXOC5O00471 708 aa10.42□□□□□ -0.74
USP54-203ENST00000418501 LARP1Q6PKG0 1096 aaKnown RBP10.42□□□□□ -0.74
USP54-203ENST00000418501 RGPD1P0DJD0 1748 aa10.42□□□□□ -0.74
USP54-203ENST00000418501 ANKRD45Q5TZF3 282 aa10.42□□□□□ -0.74
USP54-203ENST00000418501 DDX17Q92841 729 aaKnown RBP10.42□□□□□ -0.74
USP54-203ENST00000418501 GPATCH3Q96I76 525 aa10.42□□□□□ -0.74
USP54-203ENST00000418501 TMOD3Q9NYL9 352 aa10.42□□□□□ -0.74
USP54-203ENST00000418501 RLBP1P12271 317 aa10.42□□□□□ -0.74
USP54-203ENST00000418501 OS9Q13438 667 aaPredicted RBP10.42□□□□□ -0.74
USP54-203ENST00000418501 RIC3Q7Z5B4 369 aa10.42□□□□□ -0.74
USP54-203ENST00000418501 DNAAF4Q8WXU2 420 aa10.42□□□□□ -0.74
USP54-203ENST00000418501 FAM208AQ9UK61 1670 aaKnown RBP10.41□□□□□ -0.74
USP54-203ENST00000418501 ZBTB7BO15156 539 aaPredicted RBP10.41□□□□□ -0.74
USP54-203ENST00000418501 THRAP3Q9Y2W1 955 aaKnown RBP10.41□□□□□ -0.74
USP54-203ENST00000418501 ERC1Q8IUD2 1116 aa10.41□□□□□ -0.74
USP54-203ENST00000418501 LTN1O94822 1766 aa10.4□□□□□ -0.74
USP54-203ENST00000418501 UBAP1LF5GYI3 381 aa10.4□□□□□ -0.74
USP54-203ENST00000418501 SMC5Q8IY18 1101 aa10.4□□□□□ -0.74
USP54-203ENST00000418501 TRPM3Q9HCF6 1732 aaPredicted RBP10.4□□□□□ -0.74
USP54-203ENST00000418501 ZNF790Q6PG37 636 aa10.4□□□□□ -0.74
USP54-203ENST00000418501 CHD1LQ86WJ1 897 aa10.4□□□□□ -0.74
USP54-203ENST00000418501 BACH2Q9BYV9 841 aa10.4□□□□□ -0.74
USP54-203ENST00000418501 RAB11FIP3O75154 756 aa10.4□□□□□ -0.75
USP54-203ENST00000418501 ANKRD44Q8N8A2 993 aa10.4□□□□□ -0.75
USP54-203ENST00000418501 DDX54Q8TDD1 881 aaKnown RBP10.4□□□□□ -0.75
USP54-203ENST00000418501 DDX21Q9NR30 783 aaKnown RBP eCLIP10.4□□□□□ -0.75
USP54-203ENST00000418501 AXIN2Q9Y2T1 843 aa10.4□□□□□ -0.75
USP54-203ENST00000418501 STARD3NLO95772 234 aa10.39□□□□□ -0.75
USP54-203ENST00000418501 HSP90B1P14625 803 aaKnown RBP10.39□□□□□ -0.75
USP54-203ENST00000418501 NECTIN2Q92692 538 aa10.39□□□□□ -0.75
USP54-203ENST00000418501 LGR6Q9HBX8 967 aa10.39□□□□□ -0.75
USP54-203ENST00000418501 BTG4Q9NY30 223 aa10.39□□□□□ -0.75
USP54-203ENST00000418501 PCDHB15Q9Y5E8 787 aa10.39□□□□□ -0.75
USP54-203ENST00000418501 KSR2Q6VAB6 950 aa10.39□□□□□ -0.75
USP54-203ENST00000418501 ALS2Q96Q42 1657 aa10.38□□□□□ -0.75
USP54-203ENST00000418501 PIP4K2BP78356 416 aa10.38□□□□□ -0.75
USP54-203ENST00000418501 MEX3CQ5U5Q3 659 aaKnown RBP10.38□□□□□ -0.75
USP54-203ENST00000418501 PXDNLA1KZ92 1463 aa10.38□□□□□ -0.75
USP54-203ENST00000418501 IGHDP01880 384 aa10.37□□□□□ -0.75
USP54-203ENST00000418501 GIGYF1O75420 1035 aaPredicted RBP10.37□□□□□ -0.75
USP54-203ENST00000418501 NUCB1Q02818 461 aa10.37□□□□□ -0.75
USP54-203ENST00000418501 KIF6Q6ZMV9 814 aa10.37□□□□□ -0.75
USP54-203ENST00000418501 NFATC2IPQ8NCF5 419 aa10.37□□□□□ -0.75
USP54-203ENST00000418501 CHPF2Q9P2E5 772 aa10.36□□□□□ -0.75
USP54-203ENST00000418501 A0A0G2JS52 829 aa10.36□□□□□ -0.75
USP54-203ENST00000418501 HSP90AB3PQ58FF7 597 aa10.36□□□□□ -0.75
USP54-203ENST00000418501 LINS1Q8NG48 757 aa10.36□□□□□ -0.75
USP54-203ENST00000418501 SMARCC1Q92922 1105 aaPredicted RBP10.36□□□□□ -0.75
USP54-203ENST00000418501 IPO9Q96P70 1041 aaKnown RBP10.36□□□□□ -0.75
USP54-203ENST00000418501 STRCQ7RTU9 1775 aa10.36□□□□□ -0.75
USP54-203ENST00000418501 MCCP23508 829 aa10.35□□□□□ -0.75
USP54-203ENST00000418501 DCTPP1Q9H773 170 aa10.35□□□□□ -0.75
USP54-203ENST00000418501 LRRCC1Q9C099 1032 aa10.35□□□□□ -0.75
USP54-203ENST00000418501 USP35Q9P2H5 1018 aa10.35□□□□□ -0.75
USP54-203ENST00000418501 NUTM2BA6NNL0 878 aaPredicted RBP10.35□□□□□ -0.75
USP54-203ENST00000418501 NUTM2EB1AL46 878 aaPredicted RBP10.35□□□□□ -0.75
USP54-203ENST00000418501 KRT24Q2M2I5 525 aa10.35□□□□□ -0.75
USP54-203ENST00000418501 NUTM2AQ8IVF1 878 aaPredicted RBP10.35□□□□□ -0.75
USP54-203ENST00000418501 IL27Q8NEV9 243 aa10.35□□□□□ -0.75
USP54-203ENST00000418501 ATP8B2P98198 1209 aa10.35□□□□□ -0.75
USP54-203ENST00000418501 NKX1-1Q15270 411 aaPredicted RBP10.35□□□□□ -0.75
USP54-203ENST00000418501 LMO7Q8WWI1 1683 aa10.34□□□□□ -0.75
USP54-203ENST00000418501 G3BP1Q13283 466 aaKnown RBP eCLIP10.34□□□□□ -0.75
USP54-203ENST00000418501 LNPKQ9C0E8 428 aa10.34□□□□□ -0.75
USP54-203ENST00000418501 ERC2O15083 957 aa10.34□□□□□ -0.75
USP54-203ENST00000418501 DDB1Q16531 1140 aa10.34□□□□□ -0.75
USP54-203ENST00000418501 PI4KAP2A4QPH2 592 aa10.34□□□□□ -0.75
USP54-203ENST00000418501 CDC45O75419 566 aa10.34□□□□□ -0.75
USP54-203ENST00000418501 PI4KAP1Q8N8J0 262 aa10.34□□□□□ -0.75
USP54-203ENST00000418501 TNNQ9UQP3 1299 aa10.34□□□□□ -0.75
USP54-203ENST00000418501 ADAMTS2O95450 1211 aa10.33□□□□□ -0.76
USP54-203ENST00000418501 AIMP1Q12904 312 aaKnown RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms