RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 FOXR1Q6PIV2 292 aa7.19□□□□□ -1.26
HMGB3P20-201ENST00000417997 PROSER2Q86WR7 435 aaPredicted RBP7.19□□□□□ -1.26
HMGB3P20-201ENST00000417997 TRIM22Q8IYM9 498 aa7.19□□□□□ -1.26
HMGB3P20-201ENST00000417997 GTPBP3Q969Y2 492 aaKnown RBP7.19□□□□□ -1.26
HMGB3P20-201ENST00000417997 ZNF837Q96EG3 531 aaPredicted RBP7.19□□□□□ -1.26
HMGB3P20-201ENST00000417997 NOD1Q9Y239 953 aa7.19□□□□□ -1.26
HMGB3P20-201ENST00000417997 USP17L5A8MUK1 530 aa7.18□□□□□ -1.26
HMGB3P20-201ENST00000417997 H7C1W4 665 aa7.18□□□□□ -1.26
HMGB3P20-201ENST00000417997 INHAP05111 366 aa7.18□□□□□ -1.26
HMGB3P20-201ENST00000417997 LORP23490 312 aaPredicted RBP7.18□□□□□ -1.26
HMGB3P20-201ENST00000417997 SCNN1DP51172 638 aa7.18□□□□□ -1.26
HMGB3P20-201ENST00000417997 DBN1Q16643 649 aa7.18□□□□□ -1.26
HMGB3P20-201ENST00000417997 C4orf17Q53FE4 359 aa7.18□□□□□ -1.26
HMGB3P20-201ENST00000417997 WDR44Q5JSH3 913 aa7.18□□□□□ -1.26
HMGB3P20-201ENST00000417997 ADAMTS19Q8TE59 1207 aa7.18□□□□□ -1.26
HMGB3P20-201ENST00000417997 FHDC1Q9C0D6 1143 aaPredicted RBP7.18□□□□□ -1.26
HMGB3P20-201ENST00000417997 HRH3Q9Y5N1 445 aa7.18□□□□□ -1.26
HMGB3P20-201ENST00000417997 F11P03951 625 aa7.17□□□□□ -1.26
HMGB3P20-201ENST00000417997 GTF2IP78347 998 aa7.17□□□□□ -1.26
HMGB3P20-201ENST00000417997 NFATC2IPQ8NCF5 419 aa7.17□□□□□ -1.26
HMGB3P20-201ENST00000417997 NUCKS1Q9H1E3 243 aaKnown RBP7.17□□□□□ -1.26
HMGB3P20-201ENST00000417997 CSB-PGBD3P0DP91 1061 aa7.16□□□□□ -1.26
HMGB3P20-201ENST00000417997 PLA2G4AP47712 749 aa7.16□□□□□ -1.26
HMGB3P20-201ENST00000417997 PGBD3Q8N328 593 aa7.16□□□□□ -1.26
HMGB3P20-201ENST00000417997 RHBDD1Q8TEB9 315 aa7.16□□□□□ -1.26
HMGB3P20-201ENST00000417997 GMCL1Q96IK5 515 aa7.16□□□□□ -1.26
HMGB3P20-201ENST00000417997 TRERF1Q96PN7 1200 aa7.16□□□□□ -1.26
HMGB3P20-201ENST00000417997 A0A1B0GTH6 734 aa7.15□□□□□ -1.26
HMGB3P20-201ENST00000417997 LZTS3O60299 673 aaPredicted RBP7.15□□□□□ -1.26
HMGB3P20-201ENST00000417997 SMTNP53814 917 aa7.15□□□□□ -1.26
HMGB3P20-201ENST00000417997 TBC1D9Q6ZT07 1266 aa7.15□□□□□ -1.26
HMGB3P20-201ENST00000417997 PPARGC1BQ86YN6 1023 aaKnown RBP7.15□□□□□ -1.26
HMGB3P20-201ENST00000417997 AIDAQ96BJ3 306 aa7.15□□□□□ -1.26
HMGB3P20-201ENST00000417997 RUBCNLQ9H714 662 aa7.15□□□□□ -1.26
HMGB3P20-201ENST00000417997 PCDHGA11Q9Y5H2 935 aa7.15□□□□□ -1.26
HMGB3P20-201ENST00000417997 USP17L3A6NCW0 530 aa7.14□□□□□ -1.27
HMGB3P20-201ENST00000417997 USP17L4A6NCW7 530 aa7.14□□□□□ -1.27
HMGB3P20-201ENST00000417997 MSX1P28360 303 aa7.14□□□□□ -1.27
HMGB3P20-201ENST00000417997 GAS6Q14393 721 aa7.14□□□□□ -1.27
HMGB3P20-201ENST00000417997 USP17L2Q6R6M4 530 aa7.14□□□□□ -1.27
HMGB3P20-201ENST00000417997 USP17L1Q7RTZ2 530 aa7.14□□□□□ -1.27
HMGB3P20-201ENST00000417997 SVOPQ8N4V2 548 aa7.14□□□□□ -1.27
HMGB3P20-201ENST00000417997 GLMNQ92990 594 aa7.14□□□□□ -1.27
HMGB3P20-201ENST00000417997 TMEM229AB2RXF0 380 aa7.13□□□□□ -1.27
HMGB3P20-201ENST00000417997 ADAMTS2O95450 1211 aa7.13□□□□□ -1.27
HMGB3P20-201ENST00000417997 TRIM50Q86XT4 487 aa7.13□□□□□ -1.27
HMGB3P20-201ENST00000417997 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.13□□□□□ -1.27
HMGB3P20-201ENST00000417997 UCN2Q96RP3 112 aa7.13□□□□□ -1.27
HMGB3P20-201ENST00000417997 NIFKQ9BYG3 293 aaKnown RBP7.13□□□□□ -1.27
HMGB3P20-201ENST00000417997 A6NJY4 79 aa7.12□□□□□ -1.27
HMGB3P20-201ENST00000417997 BACH1O14867 736 aa7.12□□□□□ -1.27
HMGB3P20-201ENST00000417997 ATP9BO43861 1147 aa7.12□□□□□ -1.27
HMGB3P20-201ENST00000417997 WHAMMQ8TF30 809 aa7.12□□□□□ -1.27
HMGB3P20-201ENST00000417997 CALR3Q96L12 384 aaKnown RBP7.12□□□□□ -1.27
HMGB3P20-201ENST00000417997 ZNF358Q9NW07 568 aa7.12□□□□□ -1.27
HMGB3P20-201ENST00000417997 CABP1Q9NZU7 370 aa7.12□□□□□ -1.27
HMGB3P20-201ENST00000417997 EFHC2Q5JST6 749 aa7.11□□□□□ -1.27
HMGB3P20-201ENST00000417997 ZNF385CQ66K41 422 aaPredicted RBP7.11□□□□□ -1.27
HMGB3P20-201ENST00000417997 FNBP4Q8N3X1 1017 aaPredicted RBP7.11□□□□□ -1.27
HMGB3P20-201ENST00000417997 TPCN2Q8NHX9 752 aa7.11□□□□□ -1.27
HMGB3P20-201ENST00000417997 MBIPQ9NS73 344 aa7.11□□□□□ -1.27
HMGB3P20-201ENST00000417997 A6NJR5 290 aa7.1□□□□□ -1.27
HMGB3P20-201ENST00000417997 SLURP2P0DP57 97 aa7.1□□□□□ -1.27
HMGB3P20-201ENST00000417997 MX2P20592 715 aa7.1□□□□□ -1.27
HMGB3P20-201ENST00000417997 ATP1A2P50993 1020 aa7.1□□□□□ -1.27
HMGB3P20-201ENST00000417997 MAP3K10Q02779 954 aa7.1□□□□□ -1.27
HMGB3P20-201ENST00000417997 SRSF11Q05519 484 aaKnown RBP7.1□□□□□ -1.27
HMGB3P20-201ENST00000417997 NBPF1Q3BBV0 1214 aa7.1□□□□□ -1.27
HMGB3P20-201ENST00000417997 PLEKHM2Q8IWE5 1019 aa7.1□□□□□ -1.27
HMGB3P20-201ENST00000417997 ZNF594Q96JF6 807 aaPredicted RBP7.1□□□□□ -1.27
HMGB3P20-201ENST00000417997 SLC4A9Q96Q91 983 aa7.1□□□□□ -1.27
HMGB3P20-201ENST00000417997 DNAAF2Q9NVR5 837 aaKnown RBP7.1□□□□□ -1.27
HMGB3P20-201ENST00000417997 TFIP11Q9UBB9 837 aaKnown RBP7.1□□□□□ -1.27
HMGB3P20-201ENST00000417997 MKRN1Q9UHC7 482 aaKnown RBP7.1□□□□□ -1.27
HMGB3P20-201ENST00000417997 RBM19Q9Y4C8 960 aaKnown RBP7.1□□□□□ -1.27
HMGB3P20-201ENST00000417997 IGF1RP08069 1367 aa7.09□□□□□ -1.27
HMGB3P20-201ENST00000417997 CDK2AP1O14519 115 aa7.09□□□□□ -1.27
HMGB3P20-201ENST00000417997 ARSJQ5FYB0 599 aaPredicted RBP7.09□□□□□ -1.27
HMGB3P20-201ENST00000417997 TBCELQ5QJ74 424 aa7.09□□□□□ -1.27
HMGB3P20-201ENST00000417997 TNS4Q8IZW8 715 aa7.09□□□□□ -1.27
HMGB3P20-201ENST00000417997 NSFL1CQ9UNZ2 370 aaKnown RBP7.09□□□□□ -1.27
HMGB3P20-201ENST00000417997 PHF24Q9UPV7 400 aa7.09□□□□□ -1.27
HMGB3P20-201ENST00000417997 PARP3Q9Y6F1 533 aa7.09□□□□□ -1.27
HMGB3P20-201ENST00000417997 USP3Q9Y6I4 520 aa7.09□□□□□ -1.27
HMGB3P20-201ENST00000417997 THBS1P07996 1170 aa7.08□□□□□ -1.28
HMGB3P20-201ENST00000417997 TATP17735 454 aaPredicted RBP7.08□□□□□ -1.28
HMGB3P20-201ENST00000417997 CLDN10P78369 228 aa7.08□□□□□ -1.28
HMGB3P20-201ENST00000417997 CCDC102BQ68D86 513 aa7.08□□□□□ -1.28
HMGB3P20-201ENST00000417997 LYPD4Q6UWN0 246 aa7.08□□□□□ -1.28
HMGB3P20-201ENST00000417997 OGFOD1Q8N543 542 aa7.08□□□□□ -1.28
HMGB3P20-201ENST00000417997 ZNF232Q9UNY5 417 aa7.08□□□□□ -1.28
HMGB3P20-201ENST00000417997 KIAA1024Q9UPX6 916 aa7.08□□□□□ -1.28
HMGB3P20-201ENST00000417997 MTFR1Q15390 333 aa7.07□□□□□ -1.28
HMGB3P20-201ENST00000417997 BICDL1Q6ZP65 573 aa7.07□□□□□ -1.28
HMGB3P20-201ENST00000417997 ABHD17AQ96GS6 310 aa7.07□□□□□ -1.28
HMGB3P20-201ENST00000417997 SCHIP1Q9P0W5 487 aaPredicted RBP7.07□□□□□ -1.28
HMGB3P20-201ENST00000417997 ZNF777Q9ULD5 760 aaPredicted RBP7.07□□□□□ -1.28
HMGB3P20-201ENST00000417997 ADAMTS8Q9UP79 889 aa7.07□□□□□ -1.28
HMGB3P20-201ENST00000417997 IQSEC3Q9UPP2 1182 aaPredicted RBP7.07□□□□□ -1.28
HMGB3P20-201ENST00000417997 GJA3Q9Y6H8 435 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms