RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 UBR3Q6ZT12 1888 aa15.84■□□□□ 0.13
USP4-204ENST00000416417 KNSTRNQ9Y448 316 aa15.84■□□□□ 0.13
USP4-204ENST00000416417 CHD4Q14839 1912 aa15.83■□□□□ 0.12
USP4-204ENST00000416417 KDM6AO15550 1401 aaPredicted RBP15.83■□□□□ 0.12
USP4-204ENST00000416417 CNGB1Q14028 1251 aaPredicted RBP15.83■□□□□ 0.12
USP4-204ENST00000416417 PLEKHO1Q53GL0 409 aaPredicted RBP15.83■□□□□ 0.12
USP4-204ENST00000416417 SULT6B1Q6IMI4 303 aa15.83■□□□□ 0.12
USP4-204ENST00000416417 KIF7Q2M1P5 1343 aa15.82■□□□□ 0.12
USP4-204ENST00000416417 SSFA2P28290 1259 aa15.81■□□□□ 0.12
USP4-204ENST00000416417 DCAF5Q96JK2 942 aa15.81■□□□□ 0.12
USP4-204ENST00000416417 ERVV-2B6SEH9 535 aa15.8■□□□□ 0.12
USP4-204ENST00000416417 IL13P35225 146 aa15.8■□□□□ 0.12
USP4-204ENST00000416417 CABP4P57796 275 aa15.8■□□□□ 0.12
USP4-204ENST00000416417 AMER1Q5JTC6 1135 aaPredicted RBP15.8■□□□□ 0.12
USP4-204ENST00000416417 CD2APQ9Y5K6 639 aa15.8■□□□□ 0.12
USP4-204ENST00000416417 KDRP35968 1356 aa15.8■□□□□ 0.12
USP4-204ENST00000416417 PTCD1O75127 700 aaKnown RBP15.79■□□□□ 0.12
USP4-204ENST00000416417 MTHFSP49914 203 aa15.79■□□□□ 0.12
USP4-204ENST00000416417 HSP90AB1P08238 724 aaKnown RBP15.78■□□□□ 0.12
USP4-204ENST00000416417 HMGB2P26583 209 aaKnown RBP15.78■□□□□ 0.12
USP4-204ENST00000416417 C1orf141Q5JVX7 400 aa15.78■□□□□ 0.12
USP4-204ENST00000416417 CC2D1BQ5T0F9 858 aaKnown RBP15.78■□□□□ 0.12
USP4-204ENST00000416417 AMOTQ4VCS5 1084 aa15.78■□□□□ 0.12
USP4-204ENST00000416417 NFATC2IPQ8NCF5 419 aa15.78■□□□□ 0.12
USP4-204ENST00000416417 GRIN3BO60391 1043 aa15.77■□□□□ 0.11
USP4-204ENST00000416417 MMP10P09238 476 aa15.77■□□□□ 0.11
USP4-204ENST00000416417 HMOX1P09601 288 aa15.77■□□□□ 0.11
USP4-204ENST00000416417 ARHGEF1Q92888 912 aaKnown RBP15.76■□□□□ 0.11
USP4-204ENST00000416417 RTCBQ9Y3I0 505 aaKnown RBP15.76■□□□□ 0.11
USP4-204ENST00000416417 C1QTNF8P60827 252 aa15.75■□□□□ 0.11
USP4-204ENST00000416417 TRAPPC3LQ5T215 181 aa15.75■□□□□ 0.11
USP4-204ENST00000416417 PLEKHG2Q9H7P9 1386 aa15.75■□□□□ 0.11
USP4-204ENST00000416417 LGR6Q9HBX8 967 aa15.74■□□□□ 0.11
USP4-204ENST00000416417 SENP3-EIF4A1A0A087X0R7 540 aa15.73■□□□□ 0.11
USP4-204ENST00000416417 PER1O15534 1290 aaPredicted RBP15.73■□□□□ 0.11
USP4-204ENST00000416417 GIGYF1O75420 1035 aaPredicted RBP15.73■□□□□ 0.11
USP4-204ENST00000416417 RPS6KA4O75676 772 aa15.73■□□□□ 0.11
USP4-204ENST00000416417 ZNF526Q8TF50 670 aaPredicted RBP15.73■□□□□ 0.11
USP4-204ENST00000416417 SRP68Q9UHB9 627 aaKnown RBP15.73■□□□□ 0.11
USP4-204ENST00000416417 COL5A3P25940 1745 aaPredicted RBP15.72■□□□□ 0.11
USP4-204ENST00000416417 CNTNAP4Q9C0A0 1308 aa15.72■□□□□ 0.11
USP4-204ENST00000416417 GYS1P13807 737 aa15.72■□□□□ 0.11
USP4-204ENST00000416417 RFC4P35249 363 aa15.72■□□□□ 0.11
USP4-204ENST00000416417 CRKLP46109 303 aaKnown RBP15.72■□□□□ 0.11
USP4-204ENST00000416417 RC3H1Q5TC82 1133 aaKnown RBP15.72■□□□□ 0.11
USP4-204ENST00000416417 CICQ96RK0 1608 aaPredicted RBP15.72■□□□□ 0.11
USP4-204ENST00000416417 ATP10DQ9P241 1426 aa15.72■□□□□ 0.11
USP4-204ENST00000416417 SLC39A6Q13433 755 aa15.71■□□□□ 0.11
USP4-204ENST00000416417 AKAP4Q5JQC9 854 aa15.71■□□□□ 0.11
USP4-204ENST00000416417 A0A0G2JLW4 131 aa15.7■□□□□ 0.1
USP4-204ENST00000416417 MTHFSDQ2M296 383 aaKnown RBP15.7■□□□□ 0.1
USP4-204ENST00000416417 DIAPH1O60610 1272 aaKnown RBP15.69■□□□□ 0.1
USP4-204ENST00000416417 DNAJC10Q8IXB1 793 aa15.69■□□□□ 0.1
USP4-204ENST00000416417 NLGN1Q8N2Q7 840 aa15.69■□□□□ 0.1
USP4-204ENST00000416417 MYH14Q7Z406 1995 aaKnown RBP15.69■□□□□ 0.1
USP4-204ENST00000416417 PXDNLA1KZ92 1463 aa15.69■□□□□ 0.1
USP4-204ENST00000416417 ZNF831Q5JPB2 1677 aa15.69■□□□□ 0.1
USP4-204ENST00000416417 RNMTO43148 476 aaKnown RBP15.68■□□□□ 0.1
USP4-204ENST00000416417 SLC52A2Q9HAB3 445 aa15.68■□□□□ 0.1
USP4-204ENST00000416417 TJP1Q07157 1748 aa15.68■□□□□ 0.1
USP4-204ENST00000416417 ADRA2BP18089 450 aa15.68■□□□□ 0.1
USP4-204ENST00000416417 FKBP8Q14318 412 aa15.68■□□□□ 0.1
USP4-204ENST00000416417 INTS5Q6P9B9 1019 aaKnown RBP15.68■□□□□ 0.1
USP4-204ENST00000416417 N4BP2Q86UW6 1770 aaPredicted RBP15.67■□□□□ 0.1
USP4-204ENST00000416417 SCN11AQ9UI33 1791 aa15.67■□□□□ 0.1
USP4-204ENST00000416417 C4AP0C0L4 1744 aa15.67■□□□□ 0.1
USP4-204ENST00000416417 DPEP1P16444 411 aa15.67■□□□□ 0.1
USP4-204ENST00000416417 BCS1LQ9Y276 419 aa15.67■□□□□ 0.1
USP4-204ENST00000416417 PARP3Q9Y6F1 533 aa15.67■□□□□ 0.1
USP4-204ENST00000416417 C10orf71Q711Q0 1435 aa15.66■□□□□ 0.1
USP4-204ENST00000416417 U2SURPO15042 1029 aaKnown RBP15.66■□□□□ 0.1
USP4-204ENST00000416417 KIAA1551Q9HCM1 1747 aa15.66■□□□□ 0.1
USP4-204ENST00000416417 ADCY9O60503 1353 aa15.65■□□□□ 0.1
USP4-204ENST00000416417 DDR1Q08345 913 aa15.65■□□□□ 0.1
USP4-204ENST00000416417 CCDC87Q9NVE4 849 aa15.65■□□□□ 0.1
USP4-204ENST00000416417 USP42Q9H9J4 1324 aaKnown RBP15.65■□□□□ 0.1
USP4-204ENST00000416417 GPBP1L1Q9HC44 474 aaPredicted RBP15.64■□□□□ 0.09
USP4-204ENST00000416417 COL3A1P02461 1466 aaPredicted RBP15.64■□□□□ 0.09
USP4-204ENST00000416417 TGFB2P61812 414 aa15.63■□□□□ 0.09
USP4-204ENST00000416417 USPL1Q5W0Q7 1092 aa15.63■□□□□ 0.09
USP4-204ENST00000416417 CYP19A1P11511 503 aaPredicted RBP15.63■□□□□ 0.09
USP4-204ENST00000416417 MRC1P22897 1456 aa15.62■□□□□ 0.09
USP4-204ENST00000416417 KIF13BQ9NQT8 1826 aa15.62■□□□□ 0.09
USP4-204ENST00000416417 KCPQ6ZWJ8 1503 aa15.62■□□□□ 0.09
USP4-204ENST00000416417 FCHSD2O94868 740 aa15.62■□□□□ 0.09
USP4-204ENST00000416417 KCNA3P22001 575 aa15.62■□□□□ 0.09
USP4-204ENST00000416417 ARHGAP27Q6ZUM4 889 aa15.62■□□□□ 0.09
USP4-204ENST00000416417 ZBTB1Q9Y2K1 713 aa15.62■□□□□ 0.09
USP4-204ENST00000416417 SOS1Q07889 1333 aaPredicted RBP15.62■□□□□ 0.09
USP4-204ENST00000416417 CHRNA5P30532 468 aa15.61■□□□□ 0.09
USP4-204ENST00000416417 ADAMTS7Q9UKP4 1686 aa15.6■□□□□ 0.09
USP4-204ENST00000416417 CANXP27824 592 aaKnown RBP15.6■□□□□ 0.09
USP4-204ENST00000416417 IL17REQ8NFR9 667 aa15.6■□□□□ 0.09
USP4-204ENST00000416417 VIRMAQ69YN4 1812 aaKnown RBP15.6■□□□□ 0.09
USP4-204ENST00000416417 POLRMTO00411 1230 aaKnown RBP15.59■□□□□ 0.09
USP4-204ENST00000416417 ZPR1O75312 459 aa15.59■□□□□ 0.09
USP4-204ENST00000416417 TM4SF1P30408 202 aa15.59■□□□□ 0.09
USP4-204ENST00000416417 PHACTR3Q96KR7 559 aa15.58■□□□□ 0.09
USP4-204ENST00000416417 NPC1L1Q9UHC9 1359 aa15.58■□□□□ 0.09
USP4-204ENST00000416417 BCL2L12Q9HB09 334 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms